Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 SNRPEP8-201ENST00000442866 260 ntBASIC2.43□□□□□ -2.02
USP28Q96RU2 AL021397.1-201ENST00000451806 248 ntBASIC2.43□□□□□ -2.02
USP28Q96RU2 RNU6-717P-201ENST00000459076 104 ntBASIC2.43□□□□□ -2.02
USP28Q96RU2 RNU6-329P-201ENST00000459618 107 ntBASIC2.43□□□□□ -2.02
USP28Q96RU2 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC2.43□□□□□ -2.02
USP28Q96RU2 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC2.43□□□□□ -2.02
USP28Q96RU2 AC023141.11-201ENST00000508864 202 ntBASIC2.43□□□□□ -2.02
USP28Q96RU2 AC096711.2-201ENST00000510592 454 ntTSL 5 BASIC2.43□□□□□ -2.02
USP28Q96RU2 RNU7-30P-201ENST00000516835 62 ntBASIC2.43□□□□□ -2.02
USP28Q96RU2 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.43□□□□□ -2.02
USP28Q96RU2 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC2.43□□□□□ -2.02
USP28Q96RU2 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC2.43□□□□□ -2.02
USP28Q96RU2 MIR5694-201ENST00000581190 76 ntBASIC2.43□□□□□ -2.02
USP28Q96RU2 AL357078.3-201ENST00000607528 618 ntBASIC2.43□□□□□ -2.02
USP28Q96RU2 U6.42-201ENST00000618440 107 ntBASIC2.43□□□□□ -2.02
USP28Q96RU2 AC010378.1-201ENST00000619270 362 ntBASIC2.43□□□□□ -2.02
USP28Q96RU2 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.43□□□□□ -2.02
USP28Q96RU2 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
USP28Q96RU2 AC130466.1-201ENST00000636354 4683 ntTSL 5 BASIC2.43□□□□□ -2.02
USP28Q96RU2 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC2.42□□□□□ -2.02
USP28Q96RU2 OR13G1-202ENST00000642119 2568 ntAPPRIS P1 BASIC2.42□□□□□ -2.02
USP28Q96RU2 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
USP28Q96RU2 Y_RNA.100-201ENST00000363141 102 ntBASIC2.42□□□□□ -2.02
USP28Q96RU2 AC009161.1-201ENST00000417306 376 ntBASIC2.42□□□□□ -2.02
USP28Q96RU2 AL627311.1-201ENST00000431514 115 ntBASIC2.42□□□□□ -2.02
USP28Q96RU2 MTATP6P7-201ENST00000453315 681 ntBASIC2.42□□□□□ -2.02
USP28Q96RU2 TRBVA-201ENST00000498804 316 ntBASIC2.42□□□□□ -2.02
USP28Q96RU2 AC103851.1-201ENST00000506833 274 ntBASIC2.42□□□□□ -2.02
USP28Q96RU2 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC2.42□□□□□ -2.02
USP28Q96RU2 Y_RNA.687-201ENST00000516558 91 ntBASIC2.42□□□□□ -2.02
USP28Q96RU2 RNU6-323P-201ENST00000521915 107 ntBASIC2.42□□□□□ -2.02
USP28Q96RU2 AP005597.4-201ENST00000526762 229 ntBASIC2.42□□□□□ -2.02
USP28Q96RU2 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
USP28Q96RU2 AC025423.5-201ENST00000550230 219 ntBASIC2.42□□□□□ -2.02
USP28Q96RU2 MIR4782-201ENST00000577987 79 ntBASIC2.42□□□□□ -2.02
USP28Q96RU2 MIR3672-201ENST00000584290 82 ntBASIC2.42□□□□□ -2.02
USP28Q96RU2 AC091135.1-201ENST00000585943 307 ntBASIC2.42□□□□□ -2.02
USP28Q96RU2 UBE2V2P2-201ENST00000587677 504 ntBASIC2.42□□□□□ -2.02
USP28Q96RU2 AL355598.1-201ENST00000604169 202 ntBASIC2.42□□□□□ -2.02
USP28Q96RU2 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2.42□□□□□ -2.02
USP28Q96RU2 AC093913.1-201ENST00000614178 329 ntBASIC2.42□□□□□ -2.02
USP28Q96RU2 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.42□□□□□ -2.02
USP28Q96RU2 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.42□□□□□ -2.02
USP28Q96RU2 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 MTND4P12-201ENST00000498999 1377 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 RNU6-37P-201ENST00000362692 107 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 RNU6-11P-201ENST00000364234 107 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 Y_RNA.301-201ENST00000364990 103 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 RNU6-25P-201ENST00000383873 107 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 RNU6-1-201ENST00000383898 107 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 RNU6-48P-201ENST00000384161 107 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 RNU6-36P-201ENST00000384172 107 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 RNU6-4P-201ENST00000384205 107 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 RNU6-5P-201ENST00000384238 107 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 RNU6-3P-201ENST00000384314 107 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 RNU6-16P-201ENST00000384385 107 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 Y_RNA.510-201ENST00000384511 114 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 RNU6-15P-201ENST00000384534 107 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 RNU6-2-201ENST00000384627 107 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 RNU6-29P-201ENST00000384637 107 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 RNU6-9-201ENST00000384776 107 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 RNU6-33P-201ENST00000384793 107 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 MIR450B-201ENST00000401182 78 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 AL356432.1-201ENST00000405809 419 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 RNU4-53P-201ENST00000410828 140 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 MTND3P8-201ENST00000412909 339 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC2.41□□□□□ -2.02
USP28Q96RU2 VN1R36P-201ENST00000414936 291 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 AL590632.1-201ENST00000424289 371 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC2.41□□□□□ -2.02
USP28Q96RU2 NDUFA5P4-201ENST00000436704 385 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC2.41□□□□□ -2.02
USP28Q96RU2 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC2.41□□□□□ -2.02
USP28Q96RU2 NDUFB1P2-201ENST00000449477 176 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 MTND4P17-201ENST00000470444 350 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 HMGB1P30-201ENST00000492455 606 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 RNU6-581P-201ENST00000516214 105 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 RNU6-864P-201ENST00000516256 108 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 RNU6-1332P-201ENST00000516666 104 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 RNU6-256P-201ENST00000516747 97 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 IGLV3-17-201ENST00000519099 244 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC2.41□□□□□ -2.02
USP28Q96RU2 LINC02165-201ENST00000563061 443 ntTSL 3 BASIC2.41□□□□□ -2.02
USP28Q96RU2 RNU6-85P-201ENST00000605989 107 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 RNU6-6P-201ENST00000606623 107 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 AC245884.12-201ENST00000615364 59 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 MIR6132-201ENST00000622083 109 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 MIR203B-201ENST00000636080 86 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 AC110491.1-201ENST00000562191 2010 ntBASIC2.41□□□□□ -2.02
USP28Q96RU2 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC2.4□□□□□ -2.02
USP28Q96RU2 SNORD113-7-201ENST00000363762 77 ntBASIC2.4□□□□□ -2.03
USP28Q96RU2 Y_RNA.480-201ENST00000384364 102 ntBASIC2.4□□□□□ -2.03
USP28Q96RU2 RNU6-220P-201ENST00000390919 107 ntBASIC2.4□□□□□ -2.03
USP28Q96RU2 AL157937.1-201ENST00000435092 443 ntTSL 3 BASIC2.4□□□□□ -2.03
USP28Q96RU2 EEF1B2P7-201ENST00000451177 676 ntBASIC2.4□□□□□ -2.03
USP28Q96RU2 PPP1R2P5-201ENST00000457256 603 ntBASIC2.4□□□□□ -2.03
USP28Q96RU2 AC090255.1-201ENST00000495779 349 ntBASIC2.4□□□□□ -2.03
USP28Q96RU2 RN7SKP256-201ENST00000517201 314 ntBASIC2.4□□□□□ -2.03
USP28Q96RU2 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.4□□□□□ -2.03
USP28Q96RU2 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC2.4□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 133.4 ms