Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC0.77□□□□□ -2.29
CCDC42Q96M95 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC0.77□□□□□ -2.29
CCDC42Q96M95 MIR3664-201ENST00000579074 99 ntBASIC0.77□□□□□ -2.29
CCDC42Q96M95 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC0.77□□□□□ -2.29
CCDC42Q96M95 AC131235.4-201ENST00000609288 620 ntBASIC0.77□□□□□ -2.29
CCDC42Q96M95 AL021879.1-201ENST00000611756 288 ntBASIC0.77□□□□□ -2.29
CCDC42Q96M95 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC0.77□□□□□ -2.29
CCDC42Q96M95 U6.42-201ENST00000618440 107 ntBASIC0.77□□□□□ -2.29
CCDC42Q96M95 OR4G3P-201ENST00000633500 913 ntBASIC0.77□□□□□ -2.29
CCDC42Q96M95 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC0.76□□□□□ -2.29
CCDC42Q96M95 RNU6-511P-201ENST00000363496 107 ntBASIC0.76□□□□□ -2.29
CCDC42Q96M95 SNORD114-27-201ENST00000363766 70 ntBASIC0.76□□□□□ -2.29
CCDC42Q96M95 RNU6-1019P-201ENST00000364424 107 ntBASIC0.76□□□□□ -2.29
CCDC42Q96M95 MIR222-201ENST00000384992 110 ntBASIC0.76□□□□□ -2.29
CCDC42Q96M95 MIR100-201ENST00000385259 80 ntBASIC0.76□□□□□ -2.29
CCDC42Q96M95 RPS3AP36-201ENST00000398190 775 ntBASIC0.76□□□□□ -2.29
CCDC42Q96M95 RNU2-62P-201ENST00000410868 191 ntBASIC0.76□□□□□ -2.29
CCDC42Q96M95 LINC01701-201ENST00000419614 451 ntTSL 2 BASIC0.76□□□□□ -2.29
CCDC42Q96M95 AC007969.2-201ENST00000441891 191 ntBASIC0.76□□□□□ -2.29
CCDC42Q96M95 RPS4XP11-201ENST00000446897 772 ntBASIC0.76□□□□□ -2.29
CCDC42Q96M95 snoU13.30-201ENST00000458951 104 ntBASIC0.76□□□□□ -2.29
CCDC42Q96M95 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC0.76□□□□□ -2.29
CCDC42Q96M95 AHI1-208ENST00000488690 712 ntTSL 5 BASIC0.76□□□□□ -2.29
CCDC42Q96M95 ACA64.5-201ENST00000516207 127 ntBASIC0.76□□□□□ -2.29
CCDC42Q96M95 RN7SKP265-201ENST00000516448 223 ntBASIC0.76□□□□□ -2.29
CCDC42Q96M95 RNA5SP503-201ENST00000517047 117 ntBASIC0.76□□□□□ -2.29
CCDC42Q96M95 LRRC6P1-201ENST00000532188 885 ntBASIC0.76□□□□□ -2.29
CCDC42Q96M95 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC0.76□□□□□ -2.29
CCDC42Q96M95 UBE2Q2P8-201ENST00000560644 102 ntBASIC0.76□□□□□ -2.29
CCDC42Q96M95 AC009712.1-201ENST00000564938 316 ntBASIC0.76□□□□□ -2.29
CCDC42Q96M95 RNU6-87P-201ENST00000607561 108 ntBASIC0.76□□□□□ -2.29
CCDC42Q96M95 AC099566.1-205ENST00000609411 657 ntTSL 5 BASIC0.76□□□□□ -2.29
CCDC42Q96M95 AL512427.1-201ENST00000618593 349 ntBASIC0.76□□□□□ -2.29
CCDC42Q96M95 AL133216.2-202ENST00000634512 349 ntBASIC0.76□□□□□ -2.29
CCDC42Q96M95 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC0.76□□□□□ -2.29
CCDC42Q96M95 AC008163.1-202ENST00000636004 2889 ntBASIC0.76□□□□□ -2.29
CCDC42Q96M95 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC0.75□□□□□ -2.29
CCDC42Q96M95 RNU6-960P-201ENST00000364056 120 ntBASIC0.75□□□□□ -2.29
CCDC42Q96M95 RNY3P13-201ENST00000365542 102 ntBASIC0.75□□□□□ -2.29
CCDC42Q96M95 SNORA18.2-201ENST00000383865 132 ntBASIC0.75□□□□□ -2.29
CCDC42Q96M95 AC006461.1-201ENST00000412637 326 ntBASIC0.75□□□□□ -2.29
CCDC42Q96M95 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC0.75□□□□□ -2.29
CCDC42Q96M95 PIGFP2-201ENST00000421400 651 ntBASIC0.75□□□□□ -2.29
CCDC42Q96M95 AL606490.4-201ENST00000423117 127 ntBASIC0.75□□□□□ -2.29
CCDC42Q96M95 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC0.75□□□□□ -2.29
CCDC42Q96M95 HMGN1P7-201ENST00000491722 313 ntBASIC0.75□□□□□ -2.29
CCDC42Q96M95 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC0.75□□□□□ -2.29
CCDC42Q96M95 RNU4-15P-201ENST00000362613 141 ntBASIC0.74□□□□□ -2.29
CCDC42Q96M95 RNU6-769P-201ENST00000384407 104 ntBASIC0.74□□□□□ -2.29
CCDC42Q96M95 MIR19B1-201ENST00000384829 87 ntBASIC0.74□□□□□ -2.29
CCDC42Q96M95 SNORA12-201ENST00000391162 147 ntBASIC0.74□□□□□ -2.29
CCDC42Q96M95 MTCO3P41-201ENST00000414801 328 ntBASIC0.74□□□□□ -2.29
CCDC42Q96M95 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.74□□□□□ -2.29
CCDC42Q96M95 AL117351.1-201ENST00000438864 766 ntBASIC0.74□□□□□ -2.29
CCDC42Q96M95 BTBD7P2-201ENST00000441962 620 ntBASIC0.74□□□□□ -2.29
CCDC42Q96M95 HSPE1P13-201ENST00000451143 297 ntBASIC0.74□□□□□ -2.29
CCDC42Q96M95 snoU13.27-201ENST00000459278 104 ntBASIC0.74□□□□□ -2.29
CCDC42Q96M95 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC0.74□□□□□ -2.29
CCDC42Q96M95 IGHVII-53-1-201ENST00000519538 255 ntBASIC0.74□□□□□ -2.29
CCDC42Q96M95 AP000756.1-201ENST00000532606 679 ntTSL 2 BASIC0.74□□□□□ -2.29
CCDC42Q96M95 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC0.74□□□□□ -2.29
CCDC42Q96M95 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.74□□□□□ -2.29
CCDC42Q96M95 BCRP9-201ENST00000605312 388 ntBASIC0.74□□□□□ -2.29
CCDC42Q96M95 AL359821.1-201ENST00000605519 182 ntBASIC0.74□□□□□ -2.29
CCDC42Q96M95 AC108706.1-201ENST00000611053 297 ntBASIC0.74□□□□□ -2.29
CCDC42Q96M95 AC091948.2-201ENST00000636510 279 ntBASIC0.74□□□□□ -2.29
CCDC42Q96M95 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC0.74□□□□□ -2.29
CCDC42Q96M95 MIR373-201ENST00000362273 69 ntBASIC0.73□□□□□ -2.29
CCDC42Q96M95 RNU4-22P-201ENST00000411058 166 ntBASIC0.73□□□□□ -2.29
CCDC42Q96M95 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC0.73□□□□□ -2.29
CCDC42Q96M95 AC004941.2-201ENST00000427009 228 ntBASIC0.73□□□□□ -2.29
CCDC42Q96M95 AL008629.1-201ENST00000438615 184 ntBASIC0.73□□□□□ -2.29
CCDC42Q96M95 SNRPEP8-201ENST00000442866 260 ntBASIC0.73□□□□□ -2.29
CCDC42Q96M95 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.73□□□□□ -2.29
CCDC42Q96M95 ATP5J2P3-201ENST00000451550 258 ntBASIC0.73□□□□□ -2.29
CCDC42Q96M95 AC115990.1-201ENST00000526957 301 ntBASIC0.73□□□□□ -2.29
CCDC42Q96M95 AC008088.1-201ENST00000580993 280 ntBASIC0.73□□□□□ -2.29
CCDC42Q96M95 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC0.73□□□□□ -2.29
CCDC42Q96M95 Y_RNA.192-201ENST00000363977 102 ntBASIC0.72□□□□□ -2.29
CCDC42Q96M95 RNU6-384P-201ENST00000364900 104 ntBASIC0.72□□□□□ -2.29
CCDC42Q96M95 Y_RNA.595-201ENST00000410403 105 ntBASIC0.72□□□□□ -2.29
CCDC42Q96M95 RNU2-64P-201ENST00000411315 191 ntBASIC0.72□□□□□ -2.29
CCDC42Q96M95 HMGN1P14-201ENST00000412459 517 ntBASIC0.72□□□□□ -2.29
CCDC42Q96M95 ART2BP-201ENST00000453501 499 ntBASIC0.72□□□□□ -2.29
CCDC42Q96M95 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC0.72□□□□□ -2.29
CCDC42Q96M95 AC117454.1-201ENST00000491120 168 ntBASIC0.72□□□□□ -2.29
CCDC42Q96M95 MTCO3P9-201ENST00000506989 781 ntBASIC0.72□□□□□ -2.29
CCDC42Q96M95 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC0.72□□□□□ -2.29
CCDC42Q96M95 PSMC1P5-201ENST00000512850 177 ntBASIC0.72□□□□□ -2.29
CCDC42Q96M95 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.72□□□□□ -2.29
CCDC42Q96M95 PNRC2-204ENST00000579103 171 ntTSL 2 BASIC0.72□□□□□ -2.29
CCDC42Q96M95 LINC01899-202ENST00000583756 575 ntTSL 3 BASIC0.72□□□□□ -2.29
CCDC42Q96M95 AC107304.1-201ENST00000604229 296 ntBASIC0.72□□□□□ -2.29
CCDC42Q96M95 RNU6-88P-201ENST00000606801 100 ntBASIC0.72□□□□□ -2.29
CCDC42Q96M95 MIR3976-201ENST00000606807 139 ntBASIC0.72□□□□□ -2.29
CCDC42Q96M95 RMST_7.1-201ENST00000621935 268 ntBASIC0.72□□□□□ -2.29
CCDC42Q96M95 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC0.71□□□□□ -2.3
CCDC42Q96M95 RNU6-862P-201ENST00000362804 105 ntBASIC0.71□□□□□ -2.3
CCDC42Q96M95 RNU6-331P-201ENST00000384724 107 ntBASIC0.71□□□□□ -2.3
CCDC42Q96M95 MTCO1P21-201ENST00000416634 589 ntBASIC0.71□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 129.6 ms