Protein–RNA interactions for Protein: Q96JC1

VPS39, Vam6/Vps39-like protein, humanhuman

Predictions only

Length 886 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39Q96JC1 SNORA3.2-201ENST00000408221 125 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 RNA5SP390-201ENST00000410191 113 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 RNU2-23P-201ENST00000410545 195 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 RNU2-48P-201ENST00000410694 191 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 Z98742.3-201ENST00000418637 326 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.01□□□□□ -2.09
VPS39Q96JC1 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC2.01□□□□□ -2.09
VPS39Q96JC1 AC073415.1-201ENST00000449240 153 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 AL353705.4-201ENST00000449661 238 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC2.01□□□□□ -2.09
VPS39Q96JC1 AC022364.2-201ENST00000457963 554 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 AL121594.1-201ENST00000475906 575 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC2.01□□□□□ -2.09
VPS39Q96JC1 AC034226.1-201ENST00000506429 487 ntTSL 2 BASIC2.01□□□□□ -2.09
VPS39Q96JC1 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.01□□□□□ -2.09
VPS39Q96JC1 MTND3P5-201ENST00000512798 333 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 AC008549.1-201ENST00000512900 643 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 AC104136.1-201ENST00000512969 394 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 AC011257.1-201ENST00000519048 281 ntTSL 3 BASIC2.01□□□□□ -2.09
VPS39Q96JC1 AC002044.1-201ENST00000606707 158 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC2.01□□□□□ -2.09
VPS39Q96JC1 RMST_4.1-201ENST00000616886 107 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 AL158209.2-201ENST00000619266 216 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 AC026585.1-201ENST00000619582 524 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 DUXAP9-208ENST00000622815 614 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 OR5AK4P-201ENST00000635912 903 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 MIR6863-201ENST00000636112 90 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 MIR219B-201ENST00000637023 88 ntBASIC2.01□□□□□ -2.09
VPS39Q96JC1 MDM2-206ENST00000350057 1401 ntTSL 1 (best) BASIC2□□□□□ -2.09
VPS39Q96JC1 SNORD56.1-201ENST00000362913 68 ntBASIC2□□□□□ -2.09
VPS39Q96JC1 RNU6-996P-201ENST00000365438 107 ntBASIC2□□□□□ -2.09
VPS39Q96JC1 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2□□□□□ -2.09
VPS39Q96JC1 RNA5SP465-201ENST00000391195 109 ntBASIC2□□□□□ -2.09
VPS39Q96JC1 CBX3P9-201ENST00000402326 552 ntBASIC2□□□□□ -2.09
VPS39Q96JC1 RNU4-46P-201ENST00000410818 138 ntBASIC2□□□□□ -2.09
VPS39Q96JC1 RN7SKP192-201ENST00000411291 327 ntBASIC2□□□□□ -2.09
VPS39Q96JC1 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2□□□□□ -2.09
VPS39Q96JC1 GHRL-208ENST00000439975 326 ntTSL 1 (best) BASIC2□□□□□ -2.09
VPS39Q96JC1 PRPS1P1-201ENST00000445305 876 ntBASIC2□□□□□ -2.09
VPS39Q96JC1 FDX1P2-201ENST00000450769 375 ntBASIC2□□□□□ -2.09
VPS39Q96JC1 AL356010.1-201ENST00000456364 102 ntBASIC2□□□□□ -2.09
VPS39Q96JC1 RNU7-63P-201ENST00000459054 62 ntBASIC2□□□□□ -2.09
VPS39Q96JC1 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC2□□□□□ -2.09
VPS39Q96JC1 HMGB1P29-201ENST00000505659 499 ntBASIC2□□□□□ -2.09
VPS39Q96JC1 CCDC34P1-201ENST00000507441 517 ntBASIC2□□□□□ -2.09
VPS39Q96JC1 AC010493.1-201ENST00000513479 292 ntBASIC2□□□□□ -2.09
VPS39Q96JC1 RNU6-1038P-201ENST00000516516 104 ntBASIC2□□□□□ -2.09
VPS39Q96JC1 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC2□□□□□ -2.09
VPS39Q96JC1 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC2□□□□□ -2.09
VPS39Q96JC1 AC024909.2-201ENST00000553035 286 ntBASIC2□□□□□ -2.09
VPS39Q96JC1 HIF1AP1-201ENST00000553642 175 ntBASIC2□□□□□ -2.09
VPS39Q96JC1 AC090897.2-201ENST00000581715 130 ntBASIC2□□□□□ -2.09
VPS39Q96JC1 AC097065.2-201ENST00000608159 533 ntBASIC2□□□□□ -2.09
VPS39Q96JC1 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2□□□□□ -2.09
VPS39Q96JC1 AC139792.3-201ENST00000623525 224 ntBASIC2□□□□□ -2.09
VPS39Q96JC1 Y_RNA.40-201ENST00000362645 93 ntBASIC1.99□□□□□ -2.09
VPS39Q96JC1 RNU6-78P-201ENST00000362897 107 ntBASIC1.99□□□□□ -2.09
VPS39Q96JC1 RNU4-24P-201ENST00000364565 139 ntBASIC1.99□□□□□ -2.09
VPS39Q96JC1 RN7SKP223-201ENST00000410582 62 ntBASIC1.99□□□□□ -2.09
VPS39Q96JC1 AC074117.2-201ENST00000417130 397 ntBASIC1.99□□□□□ -2.09
VPS39Q96JC1 AC011243.1-201ENST00000420184 415 ntTSL 3 BASIC1.99□□□□□ -2.09
VPS39Q96JC1 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.99□□□□□ -2.09
VPS39Q96JC1 DPH3P2-201ENST00000422618 250 ntBASIC1.99□□□□□ -2.09
VPS39Q96JC1 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
VPS39Q96JC1 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC1.99□□□□□ -2.09
VPS39Q96JC1 AC096638.1-201ENST00000444678 216 ntBASIC1.99□□□□□ -2.09
VPS39Q96JC1 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC1.99□□□□□ -2.09
VPS39Q96JC1 RNU7-180P-201ENST00000459240 63 ntBASIC1.99□□□□□ -2.09
VPS39Q96JC1 snoU13.14-201ENST00000459372 104 ntBASIC1.99□□□□□ -2.09
VPS39Q96JC1 GMFBP1-201ENST00000467831 427 ntBASIC1.99□□□□□ -2.09
VPS39Q96JC1 AC087884.1-201ENST00000469738 328 ntBASIC1.99□□□□□ -2.09
VPS39Q96JC1 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC1.99□□□□□ -2.09
VPS39Q96JC1 RPL9P6-201ENST00000492764 598 ntBASIC1.99□□□□□ -2.09
VPS39Q96JC1 HMGB3P17-201ENST00000504195 649 ntBASIC1.99□□□□□ -2.09
VPS39Q96JC1 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC1.99□□□□□ -2.09
VPS39Q96JC1 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC1.99□□□□□ -2.09
VPS39Q96JC1 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC1.99□□□□□ -2.09
VPS39Q96JC1 AC105417.1-201ENST00000514691 285 ntBASIC1.99□□□□□ -2.09
VPS39Q96JC1 RNA5SP364-201ENST00000516938 78 ntBASIC1.99□□□□□ -2.09
VPS39Q96JC1 RN7SKP256-201ENST00000517201 314 ntBASIC1.99□□□□□ -2.09
VPS39Q96JC1 AC022616.8-201ENST00000533569 253 ntBASIC1.99□□□□□ -2.09
VPS39Q96JC1 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC1.99□□□□□ -2.09
VPS39Q96JC1 AC133480.1-201ENST00000547563 381 ntTSL 3 BASIC1.99□□□□□ -2.09
VPS39Q96JC1 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC1.99□□□□□ -2.09
VPS39Q96JC1 Y_RNA.783-201ENST00000613546 102 ntBASIC1.99□□□□□ -2.09
VPS39Q96JC1 DAOA-AS1_2.1-201ENST00000614829 187 ntBASIC1.99□□□□□ -2.09
VPS39Q96JC1 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC1.98□□□□□ -2.09
VPS39Q96JC1 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
VPS39Q96JC1 Y_RNA.517-201ENST00000384551 106 ntBASIC1.98□□□□□ -2.09
VPS39Q96JC1 SNORA64-201ENST00000384674 134 ntBASIC1.98□□□□□ -2.09
VPS39Q96JC1 RNU6ATAC37P-201ENST00000408328 131 ntBASIC1.98□□□□□ -2.09
VPS39Q96JC1 MIR1283-2-201ENST00000408621 87 ntBASIC1.98□□□□□ -2.09
VPS39Q96JC1 RNU2-29P-201ENST00000410423 189 ntBASIC1.98□□□□□ -2.09
VPS39Q96JC1 RNU2-16P-201ENST00000410712 136 ntBASIC1.98□□□□□ -2.09
VPS39Q96JC1 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.98□□□□□ -2.09
VPS39Q96JC1 AL139415.2-201ENST00000431968 163 ntBASIC1.98□□□□□ -2.09
VPS39Q96JC1 PRELID3BP1-201ENST00000457142 540 ntBASIC1.98□□□□□ -2.09
VPS39Q96JC1 SNRPFP3-201ENST00000457792 225 ntBASIC1.98□□□□□ -2.09
VPS39Q96JC1 RPL30P12-201ENST00000474666 353 ntBASIC1.98□□□□□ -2.09
VPS39Q96JC1 AL163973.1-201ENST00000484753 577 ntBASIC1.98□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms