Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC2.61□□□□□ -1.99
SKA1Q96BD8 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
SKA1Q96BD8 RNU6-623P-201ENST00000363143 105 ntBASIC2.61□□□□□ -1.99
SKA1Q96BD8 RNU6-944P-201ENST00000364023 107 ntBASIC2.61□□□□□ -1.99
SKA1Q96BD8 Y_RNA.436-201ENST00000384097 102 ntBASIC2.61□□□□□ -1.99
SKA1Q96BD8 RNA5SP181-201ENST00000410246 98 ntBASIC2.61□□□□□ -1.99
SKA1Q96BD8 Y_RNA.597-201ENST00000410463 100 ntBASIC2.61□□□□□ -1.99
SKA1Q96BD8 AC078809.1-201ENST00000427601 140 ntBASIC2.61□□□□□ -1.99
SKA1Q96BD8 SEPT14P3-201ENST00000439401 183 ntBASIC2.61□□□□□ -1.99
SKA1Q96BD8 MTCO2P3-201ENST00000442543 421 ntBASIC2.61□□□□□ -1.99
SKA1Q96BD8 AL732372.2-207ENST00000445840 183 ntBASIC2.61□□□□□ -1.99
SKA1Q96BD8 SEPT14P2-201ENST00000453405 183 ntBASIC2.61□□□□□ -1.99
SKA1Q96BD8 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.61□□□□□ -1.99
SKA1Q96BD8 Y_RNA.654-201ENST00000497848 106 ntBASIC2.61□□□□□ -1.99
SKA1Q96BD8 AC079340.1-201ENST00000504799 552 ntTSL 4 BASIC2.61□□□□□ -1.99
SKA1Q96BD8 SEPT14P4-201ENST00000513445 186 ntBASIC2.61□□□□□ -1.99
SKA1Q96BD8 SNORA31.25-201ENST00000517242 134 ntBASIC2.61□□□□□ -1.99
SKA1Q96BD8 AC099554.1-201ENST00000520032 572 ntTSL 3 BASIC2.61□□□□□ -1.99
SKA1Q96BD8 AC107953.1-201ENST00000522216 297 ntBASIC2.61□□□□□ -1.99
SKA1Q96BD8 FO082796.1-201ENST00000523795 183 ntBASIC2.61□□□□□ -1.99
SKA1Q96BD8 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC2.61□□□□□ -1.99
SKA1Q96BD8 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.61□□□□□ -1.99
SKA1Q96BD8 AC004908.3-201ENST00000610248 625 ntBASIC2.61□□□□□ -1.99
SKA1Q96BD8 AC063943.3-201ENST00000615562 356 ntBASIC2.61□□□□□ -1.99
SKA1Q96BD8 MIR6715A-201ENST00000615929 79 ntBASIC2.61□□□□□ -1.99
SKA1Q96BD8 U4.3-201ENST00000621047 82 ntBASIC2.61□□□□□ -1.99
SKA1Q96BD8 SNORD98-201ENST00000636377 67 ntBASIC2.61□□□□□ -1.99
SKA1Q96BD8 SLITRK6-201ENST00000400286 4318 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
SKA1Q96BD8 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.61□□□□□ -1.99
SKA1Q96BD8 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC2.61□□□□□ -1.99
SKA1Q96BD8 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
SKA1Q96BD8 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.6□□□□□ -1.99
SKA1Q96BD8 RNU6-142P-201ENST00000384019 107 ntBASIC2.6□□□□□ -1.99
SKA1Q96BD8 SNORA6-201ENST00000384033 151 ntBASIC2.6□□□□□ -1.99
SKA1Q96BD8 MIR144-201ENST00000384886 86 ntBASIC2.6□□□□□ -1.99
SKA1Q96BD8 RN7SKP61-201ENST00000410642 295 ntBASIC2.6□□□□□ -1.99
SKA1Q96BD8 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC2.6□□□□□ -1.99
SKA1Q96BD8 AC016907.1-201ENST00000419483 435 ntBASIC2.6□□□□□ -1.99
SKA1Q96BD8 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC2.6□□□□□ -1.99
SKA1Q96BD8 AL356277.2-201ENST00000421318 441 ntTSL 2 BASIC2.6□□□□□ -1.99
SKA1Q96BD8 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC2.6□□□□□ -1.99
SKA1Q96BD8 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.6□□□□□ -1.99
SKA1Q96BD8 MTCO2P7-201ENST00000446518 666 ntBASIC2.6□□□□□ -1.99
SKA1Q96BD8 AC245102.2-201ENST00000448956 180 ntBASIC2.6□□□□□ -1.99
SKA1Q96BD8 AL513124.1-201ENST00000450410 614 ntBASIC2.6□□□□□ -1.99
SKA1Q96BD8 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.6□□□□□ -1.99
SKA1Q96BD8 APOA2-205ENST00000468465 421 ntTSL 2 BASIC2.6□□□□□ -1.99
SKA1Q96BD8 RPL21P99-201ENST00000480369 423 ntBASIC2.6□□□□□ -1.99
SKA1Q96BD8 RNA5SP24-201ENST00000516478 95 ntBASIC2.6□□□□□ -1.99
SKA1Q96BD8 RNU6-1038P-201ENST00000516516 104 ntBASIC2.6□□□□□ -1.99
SKA1Q96BD8 SNORD60.2-201ENST00000516883 86 ntBASIC2.6□□□□□ -1.99
SKA1Q96BD8 RNA5SP402-201ENST00000517148 110 ntBASIC2.6□□□□□ -1.99
SKA1Q96BD8 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC2.6□□□□□ -1.99
SKA1Q96BD8 HSPE1P4-201ENST00000550617 308 ntBASIC2.6□□□□□ -1.99
SKA1Q96BD8 SNORD53-201ENST00000579969 78 ntBASIC2.6□□□□□ -1.99
SKA1Q96BD8 MIR4635-201ENST00000583759 79 ntBASIC2.6□□□□□ -1.99
SKA1Q96BD8 AC007229.1-201ENST00000590455 412 ntBASIC2.6□□□□□ -1.99
SKA1Q96BD8 AL137847.3-201ENST00000611521 109 ntBASIC2.6□□□□□ -1.99
SKA1Q96BD8 MIR6895-201ENST00000613497 78 ntBASIC2.6□□□□□ -1.99
SKA1Q96BD8 AC015540.1-201ENST00000615828 501 ntBASIC2.6□□□□□ -1.99
SKA1Q96BD8 AC064859.1-201ENST00000624741 174 ntBASIC2.6□□□□□ -1.99
SKA1Q96BD8 DENND4A-202ENST00000443035 8665 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
SKA1Q96BD8 SIRT1-203ENST00000406900 3295 ntTSL 2 BASIC2.59□□□□□ -1.99
SKA1Q96BD8 AC092268.1-201ENST00000342691 405 ntBASIC2.59□□□□□ -1.99
SKA1Q96BD8 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC2.59□□□□□ -1.99
SKA1Q96BD8 AL356057.3-201ENST00000402607 340 ntBASIC2.59□□□□□ -1.99
SKA1Q96BD8 RNU6-648P-201ENST00000410190 107 ntBASIC2.59□□□□□ -1.99
SKA1Q96BD8 AL445123.1-201ENST00000422023 446 ntTSL 2 BASIC2.59□□□□□ -1.99
SKA1Q96BD8 AL590135.1-201ENST00000422215 156 ntBASIC2.59□□□□□ -1.99
SKA1Q96BD8 AC019205.3-201ENST00000424573 156 ntBASIC2.59□□□□□ -1.99
SKA1Q96BD8 RPS12P2-201ENST00000439728 269 ntBASIC2.59□□□□□ -1.99
SKA1Q96BD8 AC016700.2-201ENST00000446011 156 ntBASIC2.59□□□□□ -1.99
SKA1Q96BD8 MTND3P16-201ENST00000452205 344 ntBASIC2.59□□□□□ -1.99
SKA1Q96BD8 AC015911.1-201ENST00000495111 156 ntBASIC2.59□□□□□ -1.99
SKA1Q96BD8 AC016632.1-201ENST00000503994 196 ntBASIC2.59□□□□□ -1.99
SKA1Q96BD8 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
SKA1Q96BD8 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.59□□□□□ -1.99
SKA1Q96BD8 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC2.59□□□□□ -1.99
SKA1Q96BD8 AC233702.2-202ENST00000562547 291 ntBASIC2.59□□□□□ -1.99
SKA1Q96BD8 HMGB1P33-201ENST00000563485 527 ntBASIC2.59□□□□□ -1.99
SKA1Q96BD8 AC007336.1-201ENST00000576365 3828 ntBASIC2.59□□□□□ -1.99
SKA1Q96BD8 AL162413.1-201ENST00000603198 110 ntBASIC2.59□□□□□ -1.99
SKA1Q96BD8 LINC02112-205ENST00000606744 236 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
SKA1Q96BD8 AC022202.1-201ENST00000613515 211 ntBASIC2.59□□□□□ -1.99
SKA1Q96BD8 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC2.59□□□□□ -1.99
SKA1Q96BD8 ARHGAP15-202ENST00000409869 2968 ntTSL 5 BASIC2.58□□□□□ -2
SKA1Q96BD8 Y_RNA.378-201ENST00000365652 113 ntBASIC2.58□□□□□ -2
SKA1Q96BD8 MIR27B-201ENST00000385129 97 ntBASIC2.58□□□□□ -2
SKA1Q96BD8 AL135786.1-201ENST00000415892 214 ntBASIC2.58□□□□□ -2
SKA1Q96BD8 AL137856.1-202ENST00000418238 422 ntTSL 3 BASIC2.58□□□□□ -2
SKA1Q96BD8 AL445989.1-202ENST00000418943 776 ntTSL 2 BASIC2.58□□□□□ -2
SKA1Q96BD8 LINC01707-201ENST00000425517 627 ntTSL 3 BASIC2.58□□□□□ -2
SKA1Q96BD8 MTND3P21-201ENST00000433774 331 ntBASIC2.58□□□□□ -2
SKA1Q96BD8 IFNA20P-201ENST00000436840 528 ntBASIC2.58□□□□□ -2
SKA1Q96BD8 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC2.58□□□□□ -2
SKA1Q96BD8 RNU6-1037P-201ENST00000459571 107 ntBASIC2.58□□□□□ -2
SKA1Q96BD8 AC019235.1-201ENST00000503847 207 ntBASIC2.58□□□□□ -2
SKA1Q96BD8 RNU6-1281P-201ENST00000516223 105 ntBASIC2.58□□□□□ -2
SKA1Q96BD8 RNU6-323P-201ENST00000521915 107 ntBASIC2.58□□□□□ -2
SKA1Q96BD8 AC007375.1-201ENST00000554513 578 ntBASIC2.58□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 152.2 ms