Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 VPS13D-214ENST00000620676 16320 ntAPPRIS P4 TSL 1 (best) BASIC5.1□□□□□ -1.59
NKX2-3Q8TAU0 Z82209.1-201ENST00000422141 2135 ntBASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 THOC1-219ENST00000616322 2078 ntAPPRIS ALT1 TSL 5 BASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 STON1-GTF2A1L-201ENST00000394751 3534 ntTSL 2 BASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 SNORA63.1-201ENST00000362493 131 ntBASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 RNU6-942P-201ENST00000363002 107 ntBASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 RNU6-1141P-201ENST00000364520 107 ntBASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 Y_RNA.456-201ENST00000384232 111 ntBASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 RNU2-68P-201ENST00000410878 191 ntBASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 AC078809.1-201ENST00000427601 140 ntBASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 AC109327.2-201ENST00000448339 378 ntBASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 AP000705.1-201ENST00000454567 350 ntBASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 RN7SKP46-201ENST00000515942 234 ntBASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 RN7SKP19-201ENST00000516016 252 ntBASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 RNA5SP360-201ENST00000516555 118 ntBASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 AC018630.3-201ENST00000542637 96 ntBASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 MIR378D2-201ENST00000580636 98 ntBASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 AC015813.4-201ENST00000610469 179 ntBASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 AL021997.2-201ENST00000615674 271 ntBASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 CCT7-217ENST00000626868 249 ntTSL 5 BASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 ZBTB26-202ENST00000373656 4443 ntAPPRIS P1 TSL 1 (best) BASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 LDHAL6CP-202ENST00000550738 3224 ntBASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC5.09□□□□□ -1.59
NKX2-3Q8TAU0 CLEC1B-204ENST00000428126 3054 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
NKX2-3Q8TAU0 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.09□□□□□ -1.6
NKX2-3Q8TAU0 GPR180-201ENST00000376958 8822 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 MALRD1-204ENST00000454679 6880 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 IQGAP2-204ENST00000502745 3404 ntTSL 2 BASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 FAM49B-212ENST00000519110 1902 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 RNU6-1285P-201ENST00000363480 105 ntBASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 RNU6-454P-201ENST00000364292 107 ntBASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 RNU6-1264P-201ENST00000383891 107 ntBASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 RNU1-44P-201ENST00000384453 163 ntBASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 MIR7-3-201ENST00000384898 110 ntBASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 AL512604.1-201ENST00000404812 257 ntBASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 AC074117.2-201ENST00000417130 397 ntBASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 AL356095.1-201ENST00000417217 199 ntBASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 AC007969.2-201ENST00000441891 191 ntBASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 AL392086.1-201ENST00000457632 299 ntTSL 3 BASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 AL161756.2-201ENST00000604597 246 ntBASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 5S_rRNA.16-201ENST00000612928 119 ntBASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 MIR6715B-201ENST00000637172 77 ntBASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 CENPE-202ENST00000380026 8241 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 UGT2A3-201ENST00000251566 2965 ntAPPRIS P1 TSL 1 (best) BASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 KLRA1P-203ENST00000535939 2353 ntTSL 1 (best) BASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 CACNB4-233ENST00000636773 4143 ntTSL 5 BASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 LRRC9-202ENST00000445360 4717 ntAPPRIS P1 TSL 5 BASIC5.08□□□□□ -1.6
NKX2-3Q8TAU0 POU2F1-206ENST00000429375 13651 ntAPPRIS ALT2 TSL 2 BASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 PCDH9-201ENST00000377861 28227 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 R3HCC1L-205ENST00000612478 3337 ntTSL 5 BASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 PPP1R9A-207ENST00000433881 9928 ntAPPRIS P1 TSL 5 BASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 ELAVL4-206ENST00000371827 3775 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 RASAL2-203ENST00000462775 14453 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 AC092268.1-201ENST00000342691 405 ntBASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 RNU6-820P-201ENST00000384273 107 ntBASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 EDDM3CP-201ENST00000415977 425 ntBASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 MLLT10P1-201ENST00000418346 262 ntBASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 HSPE1P21-201ENST00000438283 308 ntBASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 AL162151.2-201ENST00000448875 158 ntBASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 COX7A2-205ENST00000460985 357 ntTSL 2 BASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 KIRREL3-AS2-201ENST00000532988 492 ntTSL 1 (best) BASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 MIR6875-201ENST00000617506 72 ntBASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 AC140479.6-201ENST00000633535 357 ntBASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 HMCN1-201ENST00000271588 18208 ntAPPRIS P1 TSL 1 (best) BASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 CDK14-203ENST00000406263 5163 ntAPPRIS ALT2 TSL 1 (best) BASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 XIRP2-207ENST00000628543 12182 ntTSL 5 BASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 AL158064.1-201ENST00000627044 2242 ntTSL 4 BASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 OR6B1-202ENST00000641698 5153 ntAPPRIS P1 BASIC5.07□□□□□ -1.6
NKX2-3Q8TAU0 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC5.06□□□□□ -1.6
NKX2-3Q8TAU0 SLC24A2-202ENST00000341998 10749 ntAPPRIS P1 TSL 1 (best) BASIC5.06□□□□□ -1.6
NKX2-3Q8TAU0 ADAM29-201ENST00000359240 3325 ntAPPRIS P1 TSL 2 BASIC5.06□□□□□ -1.6
NKX2-3Q8TAU0 MS4A14-208ENST00000531783 2910 ntAPPRIS ALT2 TSL 5 BASIC5.06□□□□□ -1.6
NKX2-3Q8TAU0 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC5.06□□□□□ -1.6
NKX2-3Q8TAU0 SNORD115-30-201ENST00000364117 82 ntBASIC5.06□□□□□ -1.6
NKX2-3Q8TAU0 Y_RNA.328-201ENST00000365208 113 ntBASIC5.06□□□□□ -1.6
NKX2-3Q8TAU0 RNU6-1074P-201ENST00000383995 104 ntBASIC5.06□□□□□ -1.6
NKX2-3Q8TAU0 AL603914.1-201ENST00000401964 204 ntBASIC5.06□□□□□ -1.6
NKX2-3Q8TAU0 AL031003.1-201ENST00000404229 172 ntBASIC5.06□□□□□ -1.6
NKX2-3Q8TAU0 LINC02559-201ENST00000420391 188 ntTSL 2 BASIC5.06□□□□□ -1.6
NKX2-3Q8TAU0 AL024508.1-201ENST00000432477 505 ntTSL 2 BASIC5.06□□□□□ -1.6
NKX2-3Q8TAU0 snoU13.6-201ENST00000458785 104 ntBASIC5.06□□□□□ -1.6
NKX2-3Q8TAU0 RNU7-141P-201ENST00000459304 62 ntBASIC5.06□□□□□ -1.6
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms