Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 HULC.1-201ENST00000612720 240 ntBASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 Y_RNA.783-201ENST00000613546 102 ntBASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 DLEU1_1.1-201ENST00000618107 190 ntBASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 AL590808.1-201ENST00000618696 141 ntBASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 AP006437.1-201ENST00000641440 3685 ntBASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC1.66□□□□□ -2.14
CCDC54Q8NEL0 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.65□□□□□ -2.14
CCDC54Q8NEL0 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC1.65□□□□□ -2.14
CCDC54Q8NEL0 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.65□□□□□ -2.14
CCDC54Q8NEL0 MTND5P26-201ENST00000426018 1752 ntBASIC1.65□□□□□ -2.14
CCDC54Q8NEL0 Y_RNA.1-201ENST00000352915 104 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 snoU2_19.1-201ENST00000362361 80 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 RNU4-82P-201ENST00000362443 140 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 Y_RNA.167-201ENST00000363735 109 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 RNU4-75P-201ENST00000364621 146 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 RNU6-996P-201ENST00000365438 107 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 RNU4-20P-201ENST00000365601 151 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 AC019129.1-201ENST00000403786 261 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 MIR1262-201ENST00000408276 93 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 RN7SKP32-201ENST00000410167 303 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 RNU2-63P-201ENST00000410792 194 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 AL162254.1-202ENST00000419604 497 ntTSL 5 BASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 AC010975.2-201ENST00000427781 588 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 AC073464.1-201ENST00000429823 534 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 MTND2P22-201ENST00000444325 1033 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 RPL39P29-201ENST00000447779 157 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 AC009646.1-201ENST00000510455 318 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 AC010486.1-201ENST00000511793 424 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 AC105417.1-201ENST00000514691 285 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 RN7SKP298-201ENST00000515950 94 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 RNU5F-2P-201ENST00000516066 82 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 RNU4ATAC8P-201ENST00000516196 109 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 SNORA40.12-201ENST00000516329 111 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 AC034114.1-201ENST00000520293 285 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 AP001783.1-202ENST00000534620 408 ntTSL 2 BASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 AC010928.2-201ENST00000588017 287 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 AC243960.4-201ENST00000600532 288 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 ELOCP5-201ENST00000604924 333 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 AC008536.2-201ENST00000607284 349 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 AC245008.1-201ENST00000608123 476 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 AC007684.1-201ENST00000609671 477 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 AC005609.4-201ENST00000625071 447 ntBASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC1.65□□□□□ -2.15
CCDC54Q8NEL0 RNU6-212P-201ENST00000362642 104 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 Y_RNA.41-201ENST00000362646 102 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 RNU6-655P-201ENST00000362858 107 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 RNU6-1210P-201ENST00000363775 107 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 SNORD32A-201ENST00000364805 84 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 RNU6-517P-201ENST00000384362 110 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 RNU6-434P-201ENST00000384376 107 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 SNORA64-201ENST00000384674 134 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 MIR544A-201ENST00000384855 91 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 RNU6-780P-201ENST00000391030 104 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 HMGN2P39-201ENST00000398005 273 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 CALM2P3-201ENST00000400429 449 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 AL663109.1-201ENST00000411498 844 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 AL445685.2-201ENST00000422551 342 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 AC002486.1-201ENST00000435098 391 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 AC009238.1-201ENST00000442165 424 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 RPL23AP6-201ENST00000446637 472 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 AC009237.6-201ENST00000446969 424 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 RPS3AP17-201ENST00000472594 777 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 RPL30P1-201ENST00000488676 339 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 AC093534.1-201ENST00000504977 132 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 AC091874.1-201ENST00000511402 339 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 LRRC34P2-201ENST00000514850 553 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 RNU6-1038P-201ENST00000516516 104 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 RNU6-405P-201ENST00000516637 110 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 RNU6-586P-201ENST00000517265 104 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 AP005639.2-201ENST00000527592 928 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 NDUFA5P6-201ENST00000542110 379 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 AC091135.1-201ENST00000585943 307 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 AL136363.2-201ENST00000604173 851 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 AC017083.3-201ENST00000609955 700 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 AL354950.2-201ENST00000617939 290 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 SCARNA15.3-201ENST00000626315 122 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 SCARNA4.1-201ENST00000628597 123 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 IGHVIII-44-202ENST00000636235 289 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 AL450472.1-202ENST00000637286 180 ntBASIC1.64□□□□□ -2.15
CCDC54Q8NEL0 AC241585.2-209ENST00000638217 143 ntBASIC1.64□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms