Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.08□□□□□ -2.24
CCDC112Q8NEF3 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC1.08□□□□□ -2.24
CCDC112Q8NEF3 AC087477.1-201ENST00000465747 340 ntBASIC1.08□□□□□ -2.24
CCDC112Q8NEF3 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC1.08□□□□□ -2.24
CCDC112Q8NEF3 HSPE1P23-201ENST00000509838 286 ntBASIC1.08□□□□□ -2.24
CCDC112Q8NEF3 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC1.08□□□□□ -2.24
CCDC112Q8NEF3 AC105185.1-201ENST00000518705 535 ntBASIC1.08□□□□□ -2.24
CCDC112Q8NEF3 MTATP6P15-201ENST00000527233 835 ntBASIC1.08□□□□□ -2.24
CCDC112Q8NEF3 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC1.08□□□□□ -2.24
CCDC112Q8NEF3 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC1.08□□□□□ -2.24
CCDC112Q8NEF3 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC1.08□□□□□ -2.24
CCDC112Q8NEF3 UBE2Q2P8-201ENST00000560644 102 ntBASIC1.08□□□□□ -2.24
CCDC112Q8NEF3 AC137800.2-201ENST00000574375 120 ntBASIC1.08□□□□□ -2.24
CCDC112Q8NEF3 AL078604.3-201ENST00000615580 211 ntBASIC1.08□□□□□ -2.24
CCDC112Q8NEF3 AL359547.2-201ENST00000615810 418 ntBASIC1.08□□□□□ -2.24
CCDC112Q8NEF3 AP002782.1-201ENST00000623107 614 ntBASIC1.08□□□□□ -2.24
CCDC112Q8NEF3 AC022513.1-201ENST00000624512 117 ntBASIC1.08□□□□□ -2.24
CCDC112Q8NEF3 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.08□□□□□ -2.24
CCDC112Q8NEF3 RNU4-38P-201ENST00000364472 129 ntBASIC1.07□□□□□ -2.24
CCDC112Q8NEF3 RNU1-93P-201ENST00000364704 169 ntBASIC1.07□□□□□ -2.24
CCDC112Q8NEF3 MIR578-201ENST00000384828 96 ntBASIC1.07□□□□□ -2.24
CCDC112Q8NEF3 MIR489-201ENST00000384923 84 ntBASIC1.07□□□□□ -2.24
CCDC112Q8NEF3 AC003985.1-201ENST00000414127 362 ntTSL 3 BASIC1.07□□□□□ -2.24
CCDC112Q8NEF3 RPL21P90-201ENST00000415692 466 ntBASIC1.07□□□□□ -2.24
CCDC112Q8NEF3 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC1.07□□□□□ -2.24
CCDC112Q8NEF3 AL669831.1-202ENST00000428504 417 ntBASIC1.07□□□□□ -2.24
CCDC112Q8NEF3 DYNLT3P2-201ENST00000442517 295 ntBASIC1.07□□□□□ -2.24
CCDC112Q8NEF3 MTND2P4-201ENST00000445034 1004 ntBASIC1.07□□□□□ -2.24
CCDC112Q8NEF3 USP9YP25-201ENST00000457708 443 ntBASIC1.07□□□□□ -2.24
CCDC112Q8NEF3 RPL30P7-201ENST00000479312 323 ntBASIC1.07□□□□□ -2.24
CCDC112Q8NEF3 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC1.07□□□□□ -2.24
CCDC112Q8NEF3 DEFB131E-202ENST00000602581 683 ntBASIC1.07□□□□□ -2.24
CCDC112Q8NEF3 AC022022.2-201ENST00000602989 360 ntBASIC1.07□□□□□ -2.24
CCDC112Q8NEF3 AP002360.4-201ENST00000606980 481 ntBASIC1.07□□□□□ -2.24
CCDC112Q8NEF3 U6.42-201ENST00000618440 107 ntBASIC1.07□□□□□ -2.24
CCDC112Q8NEF3 RMST_7.1-201ENST00000621935 268 ntBASIC1.07□□□□□ -2.24
CCDC112Q8NEF3 OR4G3P-201ENST00000633500 913 ntBASIC1.07□□□□□ -2.24
CCDC112Q8NEF3 SNORD56.1-201ENST00000362913 68 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 Y_RNA.97-201ENST00000363094 102 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 SNORD114-27-201ENST00000363766 70 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 RNU6-931P-201ENST00000363850 107 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 RNU6-160P-201ENST00000384591 107 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 RPS3AP36-201ENST00000398190 775 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 RPL37P10-201ENST00000412884 288 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 AC006366.1-201ENST00000422002 759 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 MTND1P32-201ENST00000433043 938 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 ZNF736P1Y-201ENST00000440402 1276 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 RPL39P29-201ENST00000447779 157 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 ZNF736P5Y-201ENST00000451173 805 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 MTND1P12-201ENST00000455231 147 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 RNU6-333P-201ENST00000459117 107 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 RPS23P4-201ENST00000487908 423 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 MTCO3P9-201ENST00000506989 781 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 FABP5P5-201ENST00000515537 406 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 RNU6-113P-201ENST00000516653 101 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 AC109446.2-201ENST00000567872 497 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 MIR548AC-201ENST00000585049 88 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 FAM106DP-201ENST00000586416 501 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 BNIP3P40-201ENST00000596017 556 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 AL353778.1-201ENST00000603149 408 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 AC092106.3-201ENST00000611308 722 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 AL139418.1-201ENST00000613613 177 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 AL590240.4-201ENST00000616908 390 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 AC008993.2-201ENST00000631744 806 ntBASIC1.06□□□□□ -2.24
CCDC112Q8NEF3 MIR96-201ENST00000362288 78 ntBASIC1.05□□□□□ -2.24
CCDC112Q8NEF3 RNU6-414P-201ENST00000363705 104 ntBASIC1.05□□□□□ -2.24
CCDC112Q8NEF3 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.05□□□□□ -2.24
CCDC112Q8NEF3 RNU6-157P-201ENST00000383957 107 ntBASIC1.05□□□□□ -2.24
CCDC112Q8NEF3 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC1.05□□□□□ -2.24
CCDC112Q8NEF3 MTND1P20-201ENST00000430341 950 ntBASIC1.05□□□□□ -2.24
CCDC112Q8NEF3 AC007969.2-201ENST00000441891 191 ntBASIC1.05□□□□□ -2.24
CCDC112Q8NEF3 KATNBL1P3-201ENST00000443475 909 ntBASIC1.05□□□□□ -2.24
CCDC112Q8NEF3 AL031313.1-201ENST00000448435 256 ntBASIC1.05□□□□□ -2.24
CCDC112Q8NEF3 AL122001.1-201ENST00000457027 370 ntBASIC1.05□□□□□ -2.24
CCDC112Q8NEF3 AC022616.6-201ENST00000520479 119 ntBASIC1.05□□□□□ -2.24
CCDC112Q8NEF3 AC011979.2-201ENST00000527568 352 ntBASIC1.05□□□□□ -2.24
CCDC112Q8NEF3 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC1.05□□□□□ -2.24
CCDC112Q8NEF3 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC1.05□□□□□ -2.24
CCDC112Q8NEF3 LINC01893-201ENST00000581750 479 ntTSL 3 BASIC1.05□□□□□ -2.24
CCDC112Q8NEF3 AL136363.2-201ENST00000604173 851 ntBASIC1.05□□□□□ -2.24
CCDC112Q8NEF3 AC121334.2-201ENST00000605387 271 ntBASIC1.05□□□□□ -2.24
CCDC112Q8NEF3 AC123912.5-201ENST00000605470 343 ntBASIC1.05□□□□□ -2.24
CCDC112Q8NEF3 RMST_2.1-201ENST00000617263 136 ntBASIC1.05□□□□□ -2.24
CCDC112Q8NEF3 AC068205.3-201ENST00000636385 468 ntBASIC1.05□□□□□ -2.24
CCDC112Q8NEF3 ICE2P2-201ENST00000483823 2787 ntBASIC1.04□□□□□ -2.24
CCDC112Q8NEF3 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC1.04□□□□□ -2.24
CCDC112Q8NEF3 RNU6-112P-201ENST00000363599 104 ntBASIC1.04□□□□□ -2.24
CCDC112Q8NEF3 RNU6-371P-201ENST00000364283 108 ntBASIC1.04□□□□□ -2.24
CCDC112Q8NEF3 RNU6-1179P-201ENST00000384667 107 ntBASIC1.04□□□□□ -2.24
CCDC112Q8NEF3 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC1.04□□□□□ -2.24
CCDC112Q8NEF3 AC114491.1-201ENST00000416095 246 ntBASIC1.04□□□□□ -2.24
CCDC112Q8NEF3 MTCO2P21-201ENST00000419780 677 ntBASIC1.04□□□□□ -2.24
CCDC112Q8NEF3 LINC01674-201ENST00000427446 504 ntTSL 3 BASIC1.04□□□□□ -2.24
CCDC112Q8NEF3 AC027119.1-201ENST00000440877 241 ntBASIC1.04□□□□□ -2.24
CCDC112Q8NEF3 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.04□□□□□ -2.24
Retrieved 100 of 98,524 protein–RNA pairs in 138.9 ms