Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AP001282.2-201ENST00000616149 309 ntBASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC4.1□□□□□ -1.75
USHBP1Q8N6Y0 NR5A2-201ENST00000236914 3115 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
USHBP1Q8N6Y0 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC4.1□□□□□ -1.75
USHBP1Q8N6Y0 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC4.1□□□□□ -1.75
USHBP1Q8N6Y0 AGTR1-206ENST00000474935 1795 ntAPPRIS P1 TSL 3 BASIC4.1□□□□□ -1.75
USHBP1Q8N6Y0 XRN1-202ENST00000392981 5383 ntAPPRIS ALT1 TSL 1 (best) BASIC4.1□□□□□ -1.75
USHBP1Q8N6Y0 Y_RNA.358-201ENST00000365491 99 ntBASIC4.1□□□□□ -1.75
USHBP1Q8N6Y0 Y_RNA.405-201ENST00000383979 100 ntBASIC4.1□□□□□ -1.75
USHBP1Q8N6Y0 Y_RNA.439-201ENST00000384119 94 ntBASIC4.1□□□□□ -1.75
USHBP1Q8N6Y0 Y_RNA.451-201ENST00000384200 100 ntBASIC4.1□□□□□ -1.75
USHBP1Q8N6Y0 RNU6-166P-201ENST00000384371 107 ntBASIC4.1□□□□□ -1.75
USHBP1Q8N6Y0 Y_RNA.524-201ENST00000384564 100 ntBASIC4.1□□□□□ -1.75
USHBP1Q8N6Y0 Y_RNA.561-201ENST00000384694 100 ntBASIC4.1□□□□□ -1.75
USHBP1Q8N6Y0 SNORD15B-201ENST00000384714 146 ntBASIC4.1□□□□□ -1.75
USHBP1Q8N6Y0 SNORD115-46-201ENST00000390982 71 ntBASIC4.1□□□□□ -1.75
USHBP1Q8N6Y0 Z98941.1-201ENST00000407764 100 ntBASIC4.1□□□□□ -1.75
USHBP1Q8N6Y0 AC007560.1-201ENST00000426912 237 ntBASIC4.1□□□□□ -1.75
USHBP1Q8N6Y0 SDAD1P3-201ENST00000427380 333 ntBASIC4.1□□□□□ -1.75
USHBP1Q8N6Y0 AC139453.3-201ENST00000493276 369 ntBASIC4.1□□□□□ -1.75
USHBP1Q8N6Y0 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC4.1□□□□□ -1.75
USHBP1Q8N6Y0 SNORA31.19-201ENST00000517079 126 ntBASIC4.1□□□□□ -1.75
USHBP1Q8N6Y0 MIR2355-201ENST00000517199 87 ntBASIC4.1□□□□□ -1.75
USHBP1Q8N6Y0 AC009779.6-201ENST00000603972 165 ntBASIC4.1□□□□□ -1.75
USHBP1Q8N6Y0 AC090617.7-201ENST00000623952 126 ntBASIC4.1□□□□□ -1.75
USHBP1Q8N6Y0 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC4.1□□□□□ -1.75
USHBP1Q8N6Y0 AC058791.1-201ENST00000608412 3198 ntBASIC4.1□□□□□ -1.75
USHBP1Q8N6Y0 SERPINA7-201ENST00000327674 2642 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 AC118273.1-201ENST00000525324 3006 ntBASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 BIRC3-206ENST00000532808 4238 ntAPPRIS P1 TSL 5 BASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 AL359693.1-201ENST00000614959 2407 ntBASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 MIR22-201ENST00000362190 85 ntBASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 Y_RNA.237-201ENST00000364439 102 ntBASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 MIR215-201ENST00000384858 110 ntBASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 RNU2-33P-201ENST00000410344 192 ntBASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 RNU2-71P-201ENST00000411395 189 ntBASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 SETP5-201ENST00000437270 562 ntBASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 RPL23AP22-201ENST00000437556 453 ntBASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 AL135938.1-201ENST00000443141 297 ntBASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 AC092798.1-201ENST00000458542 409 ntBASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 RNU7-87P-201ENST00000459343 62 ntBASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 RPS4XP22-201ENST00000480755 780 ntBASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 AC010469.2-201ENST00000496412 480 ntBASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 AC005921.1-201ENST00000510589 286 ntBASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 RN7SKP132-201ENST00000516001 208 ntBASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 RNU6-572P-201ENST00000516724 80 ntBASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 RNA5SP165-201ENST00000517142 115 ntBASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 AL137100.2-201ENST00000555786 315 ntBASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 H3F3AP1-201ENST00000559984 334 ntBASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 AL512605.2-201ENST00000592972 256 ntBASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 AC090132.2-201ENST00000615881 347 ntBASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 AC091903.1-201ENST00000624322 454 ntBASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 AC244205.2-202ENST00000635781 342 ntBASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 ABCG2-204ENST00000515655 4276 ntTSL 1 (best) BASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC4.09□□□□□ -1.75
USHBP1Q8N6Y0 ARAP2-210ENST00000618163 2592 ntTSL 5 BASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 NLGN1-201ENST00000361589 5092 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 RNU5E-7P-201ENST00000365290 117 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 SPRR2D-203ENST00000368757 800 ntAPPRIS P1 TSL 3 BASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 RNU6-1181P-201ENST00000384191 106 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 Y_RNA.539-201ENST00000384635 107 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 RPL21P75-201ENST00000396599 483 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 RPL21P28-201ENST00000401418 483 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 RPS29P13-201ENST00000402041 169 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 MIR548M-201ENST00000408260 86 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 AL590556.1-201ENST00000423231 483 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 RPL27AP8-201ENST00000424277 446 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 PIGPP3-201ENST00000425307 415 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 AL590383.1-201ENST00000428602 75 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 MTCO3P29-201ENST00000432119 779 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 AL078601.1-201ENST00000444542 271 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 AC234781.5-202ENST00000453508 426 ntTSL 3 BASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 RPL21P39-201ENST00000463605 483 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 AC021205.2-201ENST00000480069 347 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 IFT80-220ENST00000483465 4044 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 AC132942.1-201ENST00000486753 483 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 AC093591.1-201ENST00000491435 481 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 RPL21P16-201ENST00000495531 483 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 RNA5SP356-201ENST00000515972 94 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 SNORA31.8-201ENST00000516327 108 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 RNU5B-3P-201ENST00000516601 115 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 Y_RNA.706-201ENST00000516933 99 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 SNORA81.3-201ENST00000517283 198 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 NDUFB9P3-201ENST00000521269 501 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 AP003123.1-201ENST00000526041 333 ntTSL 2 BASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 AC093023.1-201ENST00000547375 507 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 GTF3AP2-201ENST00000557014 266 ntBASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC4.08□□□□□ -1.76
USHBP1Q8N6Y0 AP001148.1-201ENST00000624124 2359 ntBASIC4.08□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 101.9 ms