Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 MIR302D-201ENST00000362275 68 ntBASIC0.54□□□□□ -2.32
USP54Q70EL1 RNU4-67P-201ENST00000364569 141 ntBASIC0.54□□□□□ -2.32
USP54Q70EL1 KIF27-203ENST00000376347 1030 ntTSL 5 BASIC0.54□□□□□ -2.32
USP54Q70EL1 SNORD65.1-201ENST00000390889 71 ntBASIC0.54□□□□□ -2.32
USP54Q70EL1 AL138830.1-201ENST00000435802 402 ntTSL 3 BASIC0.54□□□□□ -2.32
USP54Q70EL1 AC073614.1-201ENST00000438690 650 ntBASIC0.54□□□□□ -2.32
USP54Q70EL1 AL359771.1-201ENST00000441809 379 ntTSL 5 BASIC0.54□□□□□ -2.32
USP54Q70EL1 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC0.54□□□□□ -2.32
USP54Q70EL1 TMEM212-IT1-201ENST00000456146 470 ntTSL 3 BASIC0.54□□□□□ -2.32
USP54Q70EL1 AC130509.1-201ENST00000464158 433 ntBASIC0.54□□□□□ -2.32
USP54Q70EL1 TRBVA-201ENST00000498804 316 ntBASIC0.54□□□□□ -2.32
USP54Q70EL1 AC024589.1-201ENST00000512207 263 ntBASIC0.54□□□□□ -2.32
USP54Q70EL1 LINC02484-202ENST00000514877 546 ntTSL 3 BASIC0.54□□□□□ -2.32
USP54Q70EL1 RNU5A-4P-201ENST00000516588 111 ntBASIC0.54□□□□□ -2.32
USP54Q70EL1 RNU6-1092P-201ENST00000516955 87 ntBASIC0.54□□□□□ -2.32
USP54Q70EL1 AC136932.1-201ENST00000574771 208 ntBASIC0.54□□□□□ -2.32
USP54Q70EL1 AC136618.2-201ENST00000575091 400 ntBASIC0.54□□□□□ -2.32
USP54Q70EL1 BX284668.6-201ENST00000606899 438 ntBASIC0.54□□□□□ -2.32
USP54Q70EL1 AL159153.1-201ENST00000619688 317 ntBASIC0.54□□□□□ -2.32
USP54Q70EL1 AC092656.1-203ENST00000624134 423 ntBASIC0.54□□□□□ -2.32
USP54Q70EL1 MIR5087-201ENST00000635826 76 ntBASIC0.54□□□□□ -2.32
USP54Q70EL1 RNU6-655P-201ENST00000362858 107 ntBASIC0.53□□□□□ -2.32
USP54Q70EL1 Y_RNA.280-201ENST00000364765 112 ntBASIC0.53□□□□□ -2.32
USP54Q70EL1 RNU6-487P-201ENST00000365430 104 ntBASIC0.53□□□□□ -2.32
USP54Q70EL1 AL357139.1-201ENST00000407792 426 ntBASIC0.53□□□□□ -2.32
USP54Q70EL1 BTF3L4P1-201ENST00000413813 468 ntBASIC0.53□□□□□ -2.32
USP54Q70EL1 RPS15AP10-201ENST00000432472 382 ntBASIC0.53□□□□□ -2.32
USP54Q70EL1 AL139237.2-201ENST00000438454 493 ntTSL 3 BASIC0.53□□□□□ -2.32
USP54Q70EL1 AC134050.1-201ENST00000495088 933 ntBASIC0.53□□□□□ -2.32
USP54Q70EL1 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC0.53□□□□□ -2.32
USP54Q70EL1 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC0.53□□□□□ -2.32
USP54Q70EL1 SNORA31.19-201ENST00000517079 126 ntBASIC0.53□□□□□ -2.32
USP54Q70EL1 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC0.53□□□□□ -2.32
USP54Q70EL1 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC0.53□□□□□ -2.32
USP54Q70EL1 AL356057.1-201ENST00000533798 831 ntBASIC0.53□□□□□ -2.32
USP54Q70EL1 AL512310.8-201ENST00000550183 120 ntBASIC0.53□□□□□ -2.32
USP54Q70EL1 HMGB1P33-201ENST00000563485 527 ntBASIC0.53□□□□□ -2.32
USP54Q70EL1 MIR1273C-201ENST00000578669 77 ntBASIC0.53□□□□□ -2.32
USP54Q70EL1 AC174048.1-201ENST00000603389 144 ntBASIC0.53□□□□□ -2.32
USP54Q70EL1 RNU6-87P-201ENST00000607561 108 ntBASIC0.53□□□□□ -2.32
USP54Q70EL1 AC018926.1-201ENST00000616335 435 ntBASIC0.53□□□□□ -2.32
USP54Q70EL1 SNORA50A-201ENST00000384225 134 ntBASIC0.53□□□□□ -2.33
USP54Q70EL1 RNU6-1274P-201ENST00000384557 107 ntBASIC0.53□□□□□ -2.33
USP54Q70EL1 MIR520A-201ENST00000384862 85 ntBASIC0.53□□□□□ -2.33
USP54Q70EL1 MIR194-1-201ENST00000384892 85 ntBASIC0.53□□□□□ -2.33
USP54Q70EL1 MIR301A-201ENST00000385261 86 ntBASIC0.53□□□□□ -2.33
USP54Q70EL1 TIMM9P2-201ENST00000419324 266 ntBASIC0.53□□□□□ -2.33
USP54Q70EL1 AL589872.1-201ENST00000426602 288 ntBASIC0.53□□□□□ -2.33
USP54Q70EL1 AL591043.1-201ENST00000432461 424 ntBASIC0.53□□□□□ -2.33
USP54Q70EL1 ZNF886P-201ENST00000450781 723 ntBASIC0.53□□□□□ -2.33
USP54Q70EL1 OR2AQ1P-201ENST00000451972 200 ntBASIC0.53□□□□□ -2.33
USP54Q70EL1 AC079943.2-201ENST00000488999 716 ntTSL 3 BASIC0.53□□□□□ -2.33
USP54Q70EL1 AC103853.2-201ENST00000519805 716 ntTSL 3 BASIC0.53□□□□□ -2.33
USP54Q70EL1 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC0.53□□□□□ -2.33
USP54Q70EL1 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC0.53□□□□□ -2.33
USP54Q70EL1 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC0.53□□□□□ -2.33
USP54Q70EL1 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC0.53□□□□□ -2.33
USP54Q70EL1 AC021171.1-201ENST00000603137 706 ntBASIC0.53□□□□□ -2.33
USP54Q70EL1 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC0.53□□□□□ -2.33
USP54Q70EL1 AC068205.3-201ENST00000636385 468 ntBASIC0.53□□□□□ -2.33
USP54Q70EL1 ANKRD36BP1-202ENST00000604892 1417 ntBASIC0.52□□□□□ -2.33
USP54Q70EL1 RNU6-296P-201ENST00000384608 107 ntBASIC0.52□□□□□ -2.33
USP54Q70EL1 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
USP54Q70EL1 MTND2P4-201ENST00000445034 1004 ntBASIC0.52□□□□□ -2.33
USP54Q70EL1 SEPT14P24-201ENST00000447236 180 ntBASIC0.52□□□□□ -2.33
USP54Q70EL1 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.52□□□□□ -2.33
USP54Q70EL1 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC0.52□□□□□ -2.33
USP54Q70EL1 PSMC1P5-201ENST00000512850 177 ntBASIC0.52□□□□□ -2.33
USP54Q70EL1 SNORA3.4-201ENST00000515969 96 ntBASIC0.52□□□□□ -2.33
USP54Q70EL1 RN7SKP88-201ENST00000516847 250 ntBASIC0.52□□□□□ -2.33
USP54Q70EL1 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC0.52□□□□□ -2.33
USP54Q70EL1 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC0.52□□□□□ -2.33
USP54Q70EL1 AC093788.1-201ENST00000609356 927 ntBASIC0.52□□□□□ -2.33
USP54Q70EL1 7SK.8-201ENST00000612110 250 ntBASIC0.52□□□□□ -2.33
USP54Q70EL1 7SK.11-201ENST00000615477 250 ntBASIC0.52□□□□□ -2.33
USP54Q70EL1 CDKN2B-AS_3.1-201ENST00000617587 144 ntBASIC0.52□□□□□ -2.33
USP54Q70EL1 7SK.13-201ENST00000622040 250 ntBASIC0.52□□□□□ -2.33
USP54Q70EL1 AC112204.3-201ENST00000623822 332 ntBASIC0.52□□□□□ -2.33
USP54Q70EL1 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC0.52□□□□□ -2.33
USP54Q70EL1 AC099654.9-201ENST00000637055 678 ntBASIC0.52□□□□□ -2.33
USP54Q70EL1 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC0.52□□□□□ -2.33
USP54Q70EL1 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.51□□□□□ -2.33
USP54Q70EL1 RNU6-1019P-201ENST00000364424 107 ntBASIC0.51□□□□□ -2.33
USP54Q70EL1 Y_RNA.332-201ENST00000365271 113 ntBASIC0.51□□□□□ -2.33
USP54Q70EL1 RNA5SP299-201ENST00000391203 116 ntBASIC0.51□□□□□ -2.33
USP54Q70EL1 UBE2V1P15-201ENST00000407776 448 ntBASIC0.51□□□□□ -2.33
USP54Q70EL1 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.51□□□□□ -2.33
USP54Q70EL1 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.51□□□□□ -2.33
USP54Q70EL1 RNU1-131P-201ENST00000458943 161 ntBASIC0.51□□□□□ -2.33
USP54Q70EL1 AC104563.1-201ENST00000476147 376 ntBASIC0.51□□□□□ -2.33
USP54Q70EL1 MTND2P33-201ENST00000506452 1031 ntBASIC0.51□□□□□ -2.33
USP54Q70EL1 MTND1P36-201ENST00000522384 936 ntBASIC0.51□□□□□ -2.33
USP54Q70EL1 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.51□□□□□ -2.33
USP54Q70EL1 BNIP3P31-201ENST00000604515 566 ntBASIC0.51□□□□□ -2.33
USP54Q70EL1 RPL21P136-201ENST00000605378 396 ntBASIC0.51□□□□□ -2.33
USP54Q70EL1 AP000654.2-201ENST00000605633 586 ntBASIC0.51□□□□□ -2.33
USP54Q70EL1 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC0.51□□□□□ -2.33
USP54Q70EL1 DLEU1_2.1-201ENST00000617920 342 ntBASIC0.51□□□□□ -2.33
USP54Q70EL1 MIR6086-201ENST00000638065 55 ntBASIC0.51□□□□□ -2.33
USP54Q70EL1 AL391516.1-201ENST00000554380 2449 ntBASIC0.5□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 122 ms