Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 AC068790.2-201ENST00000602601 557 ntBASIC2.01□□□□□ -2.09
CCDC40Q4G0X9 AC136475.10-201ENST00000620253 385 ntBASIC2.01□□□□□ -2.09
CCDC40Q4G0X9 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC2.01□□□□□ -2.09
CCDC40Q4G0X9 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC2□□□□□ -2.09
CCDC40Q4G0X9 RNU6-434P-201ENST00000384376 107 ntBASIC2□□□□□ -2.09
CCDC40Q4G0X9 Y_RNA.597-201ENST00000410463 100 ntBASIC2□□□□□ -2.09
CCDC40Q4G0X9 AC004870.3-202ENST00000412996 432 ntTSL 3 BASIC2□□□□□ -2.09
CCDC40Q4G0X9 IFNA20P-201ENST00000436840 528 ntBASIC2□□□□□ -2.09
CCDC40Q4G0X9 AC243964.1-201ENST00000441814 261 ntBASIC2□□□□□ -2.09
CCDC40Q4G0X9 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC2□□□□□ -2.09
CCDC40Q4G0X9 GMFBP1-201ENST00000467831 427 ntBASIC2□□□□□ -2.09
CCDC40Q4G0X9 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC2□□□□□ -2.09
CCDC40Q4G0X9 RNU5F-2P-201ENST00000516066 82 ntBASIC2□□□□□ -2.09
CCDC40Q4G0X9 Y_RNA.695-201ENST00000516715 107 ntBASIC2□□□□□ -2.09
CCDC40Q4G0X9 MTCO2P4-201ENST00000517968 247 ntBASIC2□□□□□ -2.09
CCDC40Q4G0X9 AP005435.4-201ENST00000529514 284 ntBASIC2□□□□□ -2.09
CCDC40Q4G0X9 OSBPL9P5-201ENST00000542581 171 ntBASIC2□□□□□ -2.09
CCDC40Q4G0X9 AC009135.1-201ENST00000549303 776 ntTSL 2 BASIC2□□□□□ -2.09
CCDC40Q4G0X9 MTND3P12-201ENST00000559068 328 ntBASIC2□□□□□ -2.09
CCDC40Q4G0X9 AL391840.1-201ENST00000571144 367 ntBASIC2□□□□□ -2.09
CCDC40Q4G0X9 MIR4419B-201ENST00000577260 68 ntBASIC2□□□□□ -2.09
CCDC40Q4G0X9 MIR4528-201ENST00000577763 90 ntBASIC2□□□□□ -2.09
CCDC40Q4G0X9 AC008088.1-201ENST00000580993 280 ntBASIC2□□□□□ -2.09
CCDC40Q4G0X9 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2□□□□□ -2.09
CCDC40Q4G0X9 AC087752.4-201ENST00000605911 462 ntBASIC2□□□□□ -2.09
CCDC40Q4G0X9 AC104073.3-201ENST00000610942 955 ntBASIC2□□□□□ -2.09
CCDC40Q4G0X9 ZNRD1-AS1_3.8-201ENST00000611686 104 ntBASIC2□□□□□ -2.09
CCDC40Q4G0X9 AL158063.1-201ENST00000615349 536 ntBASIC2□□□□□ -2.09
CCDC40Q4G0X9 AC005858.4-201ENST00000623191 700 ntBASIC2□□□□□ -2.09
CCDC40Q4G0X9 NEDD1-204ENST00000457368 3162 ntTSL 2 BASIC2□□□□□ -2.09
CCDC40Q4G0X9 ATP8A2P2-201ENST00000437678 1568 ntBASIC1.99□□□□□ -2.09
CCDC40Q4G0X9 SNORD116-8-201ENST00000384365 95 ntBASIC1.99□□□□□ -2.09
CCDC40Q4G0X9 RNU6-1245P-201ENST00000411130 106 ntBASIC1.99□□□□□ -2.09
CCDC40Q4G0X9 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
CCDC40Q4G0X9 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC1.99□□□□□ -2.09
CCDC40Q4G0X9 AC079382.1-201ENST00000493346 557 ntBASIC1.99□□□□□ -2.09
CCDC40Q4G0X9 ARL2BPP4-201ENST00000506854 471 ntBASIC1.99□□□□□ -2.09
CCDC40Q4G0X9 AC009646.1-201ENST00000510455 318 ntBASIC1.99□□□□□ -2.09
CCDC40Q4G0X9 RNU1-41P-201ENST00000516161 162 ntBASIC1.99□□□□□ -2.09
CCDC40Q4G0X9 RNU1-48P-201ENST00000516400 162 ntBASIC1.99□□□□□ -2.09
CCDC40Q4G0X9 HDAC2-AS2-206ENST00000517965 850 ntTSL 3 BASIC1.99□□□□□ -2.09
CCDC40Q4G0X9 AL133368.2-201ENST00000556978 386 ntTSL 3 BASIC1.99□□□□□ -2.09
CCDC40Q4G0X9 AC078883.4-201ENST00000623218 367 ntBASIC1.99□□□□□ -2.09
CCDC40Q4G0X9 TFEC-204ENST00000457268 6309 ntTSL 3 BASIC1.99□□□□□ -2.09
CCDC40Q4G0X9 ZNF680P1-201ENST00000436625 1469 ntBASIC1.99□□□□□ -2.09
CCDC40Q4G0X9 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 RNU6-1285P-201ENST00000363480 105 ntBASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 RNU6-336P-201ENST00000364891 107 ntBASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 Y_RNA.480-201ENST00000384364 102 ntBASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 MIR29C-201ENST00000385231 88 ntBASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 AL079342.1-201ENST00000401460 267 ntBASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 MIR1283-2-201ENST00000408621 87 ntBASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 RNU2-29P-201ENST00000410423 189 ntBASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 RNU6-293P-201ENST00000411259 106 ntBASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 MTATP6P18-201ENST00000417994 673 ntBASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 AC244636.1-201ENST00000421152 228 ntBASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 OFD1P4Y-201ENST00000455273 1179 ntBASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 SCARNA18-201ENST00000459004 134 ntBASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 AC098862.1-201ENST00000504991 413 ntBASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 TMEM132D-AS1-202ENST00000510001 293 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 PTP4A1P4-201ENST00000512479 322 ntBASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 SNORA25.17-201ENST00000517184 124 ntBASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 AC109479.2-201ENST00000517842 174 ntBASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 IL7-206ENST00000520269 456 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 AC007375.1-201ENST00000554513 578 ntBASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 AC110588.1-201ENST00000559699 137 ntBASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 AC008752.3-201ENST00000588113 712 ntBASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 Z99497.2-201ENST00000603634 310 ntBASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 AC002044.1-201ENST00000606707 158 ntBASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 AC008147.4-201ENST00000617570 1204 ntBASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 ZCCHC10-202ENST00000355372 2160 ntAPPRIS ALT2 TSL 2 BASIC1.98□□□□□ -2.09
CCDC40Q4G0X9 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 RNU6-428P-201ENST00000362942 107 ntBASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 RNU6-1120P-201ENST00000362988 108 ntBASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 Y_RNA.159-201ENST00000363674 87 ntBASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 RNU6-743P-201ENST00000364151 106 ntBASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 SNORD14D-201ENST00000384390 87 ntBASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 RNU6-692P-201ENST00000384496 107 ntBASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 SRIP3-201ENST00000413200 219 ntBASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 ATP13A5-AS1-201ENST00000414634 476 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 BX510359.4-201ENST00000423750 193 ntBASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 MTND1P26-201ENST00000440488 538 ntBASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 AL513124.1-201ENST00000450410 614 ntBASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 AL356010.1-201ENST00000456364 102 ntBASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 PPP1R2P5-201ENST00000457256 603 ntBASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 LINC01198-202ENST00000458282 558 ntTSL 5 BASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 RPL21P99-201ENST00000480369 423 ntBASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 AC105417.1-201ENST00000514691 285 ntBASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 RN7SKP219-201ENST00000516825 296 ntBASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.97□□□□□ -2.09
CCDC40Q4G0X9 AC115990.1-201ENST00000526957 301 ntBASIC1.97□□□□□ -2.09
Retrieved 100 of 98,524 protein–RNA pairs in 82.2 ms