Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 MIR4768-201ENST00000585270 74 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 AL136363.2-201ENST00000604173 851 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 AC090578.1-201ENST00000604955 591 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 KATNBL1P5-201ENST00000605015 517 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 MIR3976-201ENST00000606807 139 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 MIR6516-201ENST00000630554 81 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 RNU6-223P-201ENST00000362830 107 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 RNA5SP493-201ENST00000364115 91 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 Y_RNA.410-201ENST00000383992 113 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 Y_RNA.495-201ENST00000384435 112 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 AL121904.1-202ENST00000416638 656 ntTSL 5 BASIC0.18□□□□□ -2.38
CHD9Q3L8U1 MTCYBP15-201ENST00000433123 1127 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC0.18□□□□□ -2.38
CHD9Q3L8U1 RNU6-760P-201ENST00000516078 97 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 RN7SKP287-201ENST00000516546 266 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 LINC02235-201ENST00000534675 466 ntTSL 5 BASIC0.18□□□□□ -2.38
CHD9Q3L8U1 AC136619.2-201ENST00000563361 631 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 AL358072.1-201ENST00000604156 575 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 AL161798.1-201ENST00000604630 131 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 AC100814.1-201ENST00000606963 623 ntBASIC0.18□□□□□ -2.38
CHD9Q3L8U1 RNU6-910P-201ENST00000390844 107 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 RNU6-952P-201ENST00000391164 108 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 MTATP6P27-201ENST00000416987 621 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC0.17□□□□□ -2.38
CHD9Q3L8U1 AC099063.1-201ENST00000437128 324 ntTSL 5 BASIC0.17□□□□□ -2.38
CHD9Q3L8U1 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC0.17□□□□□ -2.38
CHD9Q3L8U1 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.17□□□□□ -2.38
CHD9Q3L8U1 GUCA1C-203ENST00000471108 633 ntTSL 2 BASIC0.17□□□□□ -2.38
CHD9Q3L8U1 AC114981.1-201ENST00000503897 678 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 SNORA68.3-201ENST00000515906 83 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC0.17□□□□□ -2.38
CHD9Q3L8U1 AC008083.1-201ENST00000547748 663 ntTSL 2 BASIC0.17□□□□□ -2.38
CHD9Q3L8U1 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC0.17□□□□□ -2.38
CHD9Q3L8U1 RMST_10.1-201ENST00000616309 154 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 DLEU1_2.1-201ENST00000617920 342 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 AC123767.1-202ENST00000620407 817 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 MTND4P14-201ENST00000435799 1354 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.17□□□□□ -2.38
CHD9Q3L8U1 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC0.17□□□□□ -2.38
CHD9Q3L8U1 Y_RNA.28-201ENST00000362554 111 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 SNORA36.1-201ENST00000363424 132 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 Y_RNA.375-201ENST00000365625 101 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 MIR506-201ENST00000384998 124 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 SNORD89-201ENST00000390981 114 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 RNA5SP100-201ENST00000410903 110 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 RNA5SP59-201ENST00000410922 110 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC0.17□□□□□ -2.38
CHD9Q3L8U1 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC0.17□□□□□ -2.38
CHD9Q3L8U1 AC025038.1-201ENST00000433249 336 ntTSL 3 BASIC0.17□□□□□ -2.38
CHD9Q3L8U1 AC020550.1-201ENST00000447385 163 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 AL008723.1-201ENST00000452181 590 ntTSL 5 BASIC0.17□□□□□ -2.38
CHD9Q3L8U1 AC067940.1-201ENST00000458411 300 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.17□□□□□ -2.38
CHD9Q3L8U1 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC0.17□□□□□ -2.38
CHD9Q3L8U1 PDCD5P2-201ENST00000507570 312 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 AC008628.1-201ENST00000508663 265 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 TRAPPC2P7-201ENST00000509650 231 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 AC010261.1-201ENST00000514411 457 ntTSL 5 BASIC0.17□□□□□ -2.38
CHD9Q3L8U1 AC112206.3-201ENST00000514578 389 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC0.17□□□□□ -2.38
CHD9Q3L8U1 RNU6-1092P-201ENST00000516955 87 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 5S_rRNA.3-201ENST00000517021 110 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 AL583856.2-201ENST00000606298 543 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 5S_rRNA.19-201ENST00000612131 110 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 AC018926.1-201ENST00000616335 435 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 5S_rRNA.18-201ENST00000621941 110 ntBASIC0.17□□□□□ -2.38
CHD9Q3L8U1 TTTY3B-201ENST00000631331 344 ntTSL 1 (best) BASIC0.17□□□□□ -2.38
CHD9Q3L8U1 SNORD51.1-201ENST00000365405 77 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 SNORD116-20-201ENST00000384529 92 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 AL357139.1-201ENST00000407792 426 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 COX6CP10-201ENST00000416832 224 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 USP9YP22-201ENST00000438971 294 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 MTCO3P45-201ENST00000443036 613 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 AL162395.1-201ENST00000457882 422 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC0.16□□□□□ -2.38
CHD9Q3L8U1 SNORA14.1-201ENST00000516113 141 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 RNA5SP503-201ENST00000517047 117 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC0.16□□□□□ -2.38
CHD9Q3L8U1 AC026371.1-201ENST00000551867 419 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 MRPS36P5-201ENST00000551909 298 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 AC005951.2-201ENST00000576282 495 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 RNU6-349P-201ENST00000362402 107 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 Y_RNA.100-201ENST00000363141 102 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 RNU6-1335P-201ENST00000365426 107 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC0.16□□□□□ -2.38
CHD9Q3L8U1 MIR29B2-201ENST00000385055 81 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC0.16□□□□□ -2.38
CHD9Q3L8U1 RPL22P18-201ENST00000417197 377 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC0.16□□□□□ -2.38
CHD9Q3L8U1 AL139397.1-201ENST00000430456 644 ntTSL 2 BASIC0.16□□□□□ -2.38
CHD9Q3L8U1 CETN4P-201ENST00000432407 469 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 MTND2P4-201ENST00000445034 1004 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 AC023194.1-201ENST00000493084 308 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 TRBVA-201ENST00000498804 316 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 PTP4A1P4-201ENST00000512479 322 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 RNU6-667P-201ENST00000517186 102 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 LINC02461-201ENST00000553211 836 ntTSL 3 BASIC0.16□□□□□ -2.38
CHD9Q3L8U1 EIF1AXP2-201ENST00000555940 413 ntBASIC0.16□□□□□ -2.38
CHD9Q3L8U1 AL158211.1-201ENST00000566763 763 ntBASIC0.16□□□□□ -2.38
Retrieved 100 of 98,524 protein–RNA pairs in 105.9 ms