Protein–RNA interactions for Protein: P78363

ABCA4, Retinal-specific ATP-binding cassette transporter, humanhuman

Predictions only

Length 2,273 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA4P78363 AC069114.2-201ENST00000604699 304 ntBASIC0.4□□□□□ -2.34
ABCA4P78363 uc_338.17-201ENST00000619633 179 ntBASIC0.4□□□□□ -2.34
ABCA4P78363 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC0.4□□□□□ -2.34
ABCA4P78363 SNORD114-6-201ENST00000364393 72 ntBASIC0.4□□□□□ -2.35
ABCA4P78363 Y_RNA.324-201ENST00000365165 102 ntBASIC0.4□□□□□ -2.35
ABCA4P78363 RNU6-1274P-201ENST00000384557 107 ntBASIC0.4□□□□□ -2.35
ABCA4P78363 SNORD65.1-201ENST00000390889 71 ntBASIC0.4□□□□□ -2.35
ABCA4P78363 RNU6-1245P-201ENST00000411130 106 ntBASIC0.4□□□□□ -2.35
ABCA4P78363 AC069282.1-201ENST00000411911 526 ntBASIC0.4□□□□□ -2.35
ABCA4P78363 BX119904.4-201ENST00000424402 301 ntBASIC0.4□□□□□ -2.35
ABCA4P78363 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC0.4□□□□□ -2.35
ABCA4P78363 RNU7-136P-201ENST00000458819 69 ntBASIC0.4□□□□□ -2.35
ABCA4P78363 RNU6-1261P-201ENST00000517194 104 ntBASIC0.4□□□□□ -2.35
ABCA4P78363 AC009902.1-201ENST00000519351 183 ntBASIC0.4□□□□□ -2.35
ABCA4P78363 CENPUP1-201ENST00000526649 1202 ntBASIC0.4□□□□□ -2.35
ABCA4P78363 AC022022.2-201ENST00000602989 360 ntBASIC0.4□□□□□ -2.35
ABCA4P78363 AC105129.3-201ENST00000605455 485 ntBASIC0.4□□□□□ -2.35
ABCA4P78363 TUG1_2.1-201ENST00000614234 87 ntBASIC0.4□□□□□ -2.35
ABCA4P78363 MIR3529-201ENST00000637713 78 ntBASIC0.4□□□□□ -2.35
ABCA4P78363 Y_RNA.185-201ENST00000363894 100 ntBASIC0.39□□□□□ -2.35
ABCA4P78363 RNU6-1065P-201ENST00000384513 106 ntBASIC0.39□□□□□ -2.35
ABCA4P78363 RNU6-1176P-201ENST00000390955 107 ntBASIC0.39□□□□□ -2.35
ABCA4P78363 RNA5SP299-201ENST00000391203 116 ntBASIC0.39□□□□□ -2.35
ABCA4P78363 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC0.39□□□□□ -2.35
ABCA4P78363 AL135787.1-201ENST00000450154 302 ntTSL 3 BASIC0.39□□□□□ -2.35
ABCA4P78363 COX6CP6-201ENST00000490840 228 ntBASIC0.39□□□□□ -2.35
ABCA4P78363 AL365273.2-201ENST00000491114 492 ntAPPRIS P1 TSL 5 BASIC0.39□□□□□ -2.35
ABCA4P78363 AC009646.1-201ENST00000510455 318 ntBASIC0.39□□□□□ -2.35
ABCA4P78363 AP003355.1-201ENST00000518956 587 ntBASIC0.39□□□□□ -2.35
ABCA4P78363 LINC01932-201ENST00000520323 573 ntTSL 5 BASIC0.39□□□□□ -2.35
ABCA4P78363 ZNF92P2-201ENST00000600543 1059 ntBASIC0.39□□□□□ -2.35
ABCA4P78363 AL358072.1-201ENST00000604156 575 ntBASIC0.39□□□□□ -2.35
ABCA4P78363 HIF1A-204ENST00000539097 3956 ntTSL 1 (best) BASIC0.39□□□□□ -2.35
ABCA4P78363 RNU6-188P-201ENST00000364207 107 ntBASIC0.39□□□□□ -2.35
ABCA4P78363 RNU6-923P-201ENST00000364753 107 ntBASIC0.39□□□□□ -2.35
ABCA4P78363 AC083799.1-201ENST00000366451 910 ntBASIC0.39□□□□□ -2.35
ABCA4P78363 MRPL35P1-201ENST00000404272 572 ntBASIC0.39□□□□□ -2.35
ABCA4P78363 SNX2P2-201ENST00000424553 323 ntBASIC0.39□□□□□ -2.35
ABCA4P78363 RNA5SP503-201ENST00000517047 117 ntBASIC0.39□□□□□ -2.35
ABCA4P78363 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC0.39□□□□□ -2.35
ABCA4P78363 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC0.38□□□□□ -2.35
ABCA4P78363 RNA5SP327-201ENST00000362494 101 ntBASIC0.38□□□□□ -2.35
ABCA4P78363 RNU6-97P-201ENST00000363387 104 ntBASIC0.38□□□□□ -2.35
ABCA4P78363 Y_RNA.332-201ENST00000365271 113 ntBASIC0.38□□□□□ -2.35
ABCA4P78363 SNORD116-20-201ENST00000384529 92 ntBASIC0.38□□□□□ -2.35
ABCA4P78363 AL138737.1-202ENST00000418834 876 ntTSL 3 BASIC0.38□□□□□ -2.35
ABCA4P78363 AC016710.1-201ENST00000421326 466 ntTSL 3 BASIC0.38□□□□□ -2.35
ABCA4P78363 AL606490.4-201ENST00000423117 127 ntBASIC0.38□□□□□ -2.35
ABCA4P78363 AL589872.1-201ENST00000426602 288 ntBASIC0.38□□□□□ -2.35
ABCA4P78363 LRRC70-203ENST00000491184 703 ntTSL 3 BASIC0.38□□□□□ -2.35
ABCA4P78363 AC145146.1-201ENST00000496370 254 ntBASIC0.38□□□□□ -2.35
ABCA4P78363 PSMC1P5-201ENST00000512850 177 ntBASIC0.38□□□□□ -2.35
ABCA4P78363 RNU6-143P-201ENST00000516942 93 ntBASIC0.38□□□□□ -2.35
ABCA4P78363 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC0.38□□□□□ -2.35
ABCA4P78363 SNRPGP1-201ENST00000553864 222 ntBASIC0.38□□□□□ -2.35
ABCA4P78363 AL442163.3-201ENST00000554110 156 ntBASIC0.38□□□□□ -2.35
ABCA4P78363 AC090578.1-201ENST00000604955 591 ntBASIC0.38□□□□□ -2.35
ABCA4P78363 AC108676.2-201ENST00000605225 163 ntBASIC0.38□□□□□ -2.35
ABCA4P78363 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC0.38□□□□□ -2.35
ABCA4P78363 C9orf84-205ENST00000394779 5060 ntAPPRIS ALT2 TSL 2 BASIC0.38□□□□□ -2.35
ABCA4P78363 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC0.38□□□□□ -2.35
ABCA4P78363 RNU1-96P-201ENST00000364163 162 ntBASIC0.38□□□□□ -2.35
ABCA4P78363 RNU6-1305P-201ENST00000364353 104 ntBASIC0.38□□□□□ -2.35
ABCA4P78363 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.38□□□□□ -2.35
ABCA4P78363 RNA5SP25-201ENST00000410815 110 ntBASIC0.38□□□□□ -2.35
ABCA4P78363 RNU6-1054P-201ENST00000411293 104 ntBASIC0.38□□□□□ -2.35
ABCA4P78363 CLYBL-AS1-201ENST00000416009 621 ntTSL 3 BASIC0.38□□□□□ -2.35
ABCA4P78363 AL590556.1-201ENST00000423231 483 ntBASIC0.38□□□□□ -2.35
ABCA4P78363 MTND2P4-201ENST00000445034 1004 ntBASIC0.38□□□□□ -2.35
ABCA4P78363 AL606517.1-201ENST00000446914 387 ntBASIC0.38□□□□□ -2.35
ABCA4P78363 MED28P2-201ENST00000475771 317 ntBASIC0.38□□□□□ -2.35
ABCA4P78363 TRBVA-201ENST00000498804 316 ntBASIC0.38□□□□□ -2.35
ABCA4P78363 AC093809.1-201ENST00000509155 340 ntBASIC0.38□□□□□ -2.35
ABCA4P78363 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC0.38□□□□□ -2.35
ABCA4P78363 HIGD1AP17-201ENST00000554576 276 ntBASIC0.38□□□□□ -2.35
ABCA4P78363 AC068790.6-201ENST00000602558 258 ntBASIC0.38□□□□□ -2.35
ABCA4P78363 MIR1322-201ENST00000638013 71 ntBASIC0.38□□□□□ -2.35
ABCA4P78363 RNU6-862P-201ENST00000362804 105 ntBASIC0.37□□□□□ -2.35
ABCA4P78363 MIR200A-201ENST00000384875 90 ntBASIC0.37□□□□□ -2.35
ABCA4P78363 MIR194-1-201ENST00000384892 85 ntBASIC0.37□□□□□ -2.35
ABCA4P78363 RNA5SP266-201ENST00000410273 108 ntBASIC0.37□□□□□ -2.35
ABCA4P78363 Y_RNA.597-201ENST00000410463 100 ntBASIC0.37□□□□□ -2.35
ABCA4P78363 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC0.37□□□□□ -2.35
ABCA4P78363 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC0.37□□□□□ -2.35
ABCA4P78363 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC0.37□□□□□ -2.35
ABCA4P78363 AC093259.1-201ENST00000509755 300 ntBASIC0.37□□□□□ -2.35
ABCA4P78363 AL157871.3-201ENST00000557231 293 ntBASIC0.37□□□□□ -2.35
ABCA4P78363 AP001981.2-201ENST00000603241 418 ntBASIC0.37□□□□□ -2.35
ABCA4P78363 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.37□□□□□ -2.35
ABCA4P78363 AC120349.2-201ENST00000625002 298 ntBASIC0.37□□□□□ -2.35
ABCA4P78363 SCARNA4-202ENST00000625402 129 ntBASIC0.37□□□□□ -2.35
ABCA4P78363 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC0.37□□□□□ -2.35
ABCA4P78363 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC0.36□□□□□ -2.35
ABCA4P78363 CXADR-202ENST00000356275 270 ntTSL 1 (best) BASIC0.36□□□□□ -2.35
ABCA4P78363 MIR16-2-201ENST00000362117 81 ntBASIC0.36□□□□□ -2.35
ABCA4P78363 SNORA9.1-201ENST00000362412 131 ntBASIC0.36□□□□□ -2.35
ABCA4P78363 RNU6-39P-201ENST00000384344 107 ntBASIC0.36□□□□□ -2.35
ABCA4P78363 RNU6-1122P-201ENST00000384449 107 ntBASIC0.36□□□□□ -2.35
ABCA4P78363 MIR520A-201ENST00000384862 85 ntBASIC0.36□□□□□ -2.35
ABCA4P78363 CBX3P9-201ENST00000402326 552 ntBASIC0.36□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 129.9 ms