Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 RNU6-1-201ENST00000383898 107 ntBASIC1.87□□□□□ -2.11
LIM2P55344 RNU6-48P-201ENST00000384161 107 ntBASIC1.87□□□□□ -2.11
LIM2P55344 RNU6-36P-201ENST00000384172 107 ntBASIC1.87□□□□□ -2.11
LIM2P55344 RNU6-4P-201ENST00000384205 107 ntBASIC1.87□□□□□ -2.11
LIM2P55344 RNU6-5P-201ENST00000384238 107 ntBASIC1.87□□□□□ -2.11
LIM2P55344 RNU6-3P-201ENST00000384314 107 ntBASIC1.87□□□□□ -2.11
LIM2P55344 RNU6-16P-201ENST00000384385 107 ntBASIC1.87□□□□□ -2.11
LIM2P55344 RNU6-15P-201ENST00000384534 107 ntBASIC1.87□□□□□ -2.11
LIM2P55344 RNU6-2-201ENST00000384627 107 ntBASIC1.87□□□□□ -2.11
LIM2P55344 RNU6-29P-201ENST00000384637 107 ntBASIC1.87□□□□□ -2.11
LIM2P55344 Y_RNA.559-201ENST00000384686 107 ntBASIC1.87□□□□□ -2.11
LIM2P55344 RNU6-9-201ENST00000384776 107 ntBASIC1.87□□□□□ -2.11
LIM2P55344 RNU6-33P-201ENST00000384793 107 ntBASIC1.87□□□□□ -2.11
LIM2P55344 AC068050.1-201ENST00000394891 380 ntBASIC1.87□□□□□ -2.11
LIM2P55344 AL606923.1-201ENST00000406616 190 ntBASIC1.87□□□□□ -2.11
LIM2P55344 RNU4-26P-201ENST00000410270 107 ntBASIC1.87□□□□□ -2.11
LIM2P55344 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC1.87□□□□□ -2.11
LIM2P55344 AL117339.3-201ENST00000418733 162 ntBASIC1.87□□□□□ -2.11
LIM2P55344 ARL5AP1-201ENST00000418991 388 ntBASIC1.87□□□□□ -2.11
LIM2P55344 TRAPPC2P3-201ENST00000443200 321 ntBASIC1.87□□□□□ -2.11
LIM2P55344 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC1.87□□□□□ -2.11
LIM2P55344 PSPHP1-201ENST00000450062 261 ntBASIC1.87□□□□□ -2.11
LIM2P55344 FDX1P2-201ENST00000450769 375 ntBASIC1.87□□□□□ -2.11
LIM2P55344 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC1.87□□□□□ -2.11
LIM2P55344 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC1.87□□□□□ -2.11
LIM2P55344 RN7SL429P-201ENST00000479090 223 ntBASIC1.87□□□□□ -2.11
LIM2P55344 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC1.87□□□□□ -2.11
LIM2P55344 RN7SL489P-201ENST00000486185 223 ntBASIC1.87□□□□□ -2.11
LIM2P55344 RN7SL327P-201ENST00000488659 223 ntBASIC1.87□□□□□ -2.11
LIM2P55344 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC1.87□□□□□ -2.11
LIM2P55344 RPL38P4-201ENST00000502376 214 ntBASIC1.87□□□□□ -2.11
LIM2P55344 AC022447.4-201ENST00000504053 364 ntBASIC1.87□□□□□ -2.11
LIM2P55344 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC1.87□□□□□ -2.11
LIM2P55344 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC1.87□□□□□ -2.11
LIM2P55344 AC025575.1-201ENST00000548497 544 ntTSL 4 BASIC1.87□□□□□ -2.11
LIM2P55344 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.87□□□□□ -2.11
LIM2P55344 AC093249.1-201ENST00000567049 203 ntBASIC1.87□□□□□ -2.11
LIM2P55344 MYL12BP1-201ENST00000569826 507 ntBASIC1.87□□□□□ -2.11
LIM2P55344 APOOP1-201ENST00000604695 592 ntBASIC1.87□□□□□ -2.11
LIM2P55344 RNU6-6P-201ENST00000606623 107 ntBASIC1.87□□□□□ -2.11
LIM2P55344 RN7SL853P-201ENST00000617250 223 ntBASIC1.87□□□□□ -2.11
LIM2P55344 AC124864.2-201ENST00000624736 186 ntBASIC1.87□□□□□ -2.11
LIM2P55344 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.87□□□□□ -2.11
LIM2P55344 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC1.87□□□□□ -2.11
LIM2P55344 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.87□□□□□ -2.11
LIM2P55344 ZNF355P-201ENST00000427301 3216 ntBASIC1.86□□□□□ -2.11
LIM2P55344 RNU6-623P-201ENST00000363143 105 ntBASIC1.86□□□□□ -2.11
LIM2P55344 RNU6-1085P-201ENST00000363576 107 ntBASIC1.86□□□□□ -2.11
LIM2P55344 MTCO3P40-201ENST00000392516 676 ntBASIC1.86□□□□□ -2.11
LIM2P55344 USP9YP14-201ENST00000430663 563 ntBASIC1.86□□□□□ -2.11
LIM2P55344 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.86□□□□□ -2.11
LIM2P55344 MTND1P1-201ENST00000445453 368 ntBASIC1.86□□□□□ -2.11
LIM2P55344 AC068781.1-201ENST00000488231 618 ntBASIC1.86□□□□□ -2.11
LIM2P55344 RNA5SP137-201ENST00000516833 135 ntBASIC1.86□□□□□ -2.11
LIM2P55344 IGLV3-17-201ENST00000519099 244 ntBASIC1.86□□□□□ -2.11
LIM2P55344 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.86□□□□□ -2.11
LIM2P55344 OR11H5P-201ENST00000554039 926 ntBASIC1.86□□□□□ -2.11
LIM2P55344 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC1.86□□□□□ -2.11
LIM2P55344 AL670379.2-201ENST00000604983 252 ntBASIC1.86□□□□□ -2.11
LIM2P55344 AC002044.1-201ENST00000606707 158 ntBASIC1.86□□□□□ -2.11
LIM2P55344 AC004908.3-201ENST00000610248 625 ntBASIC1.86□□□□□ -2.11
LIM2P55344 HULC.1-201ENST00000612720 240 ntBASIC1.86□□□□□ -2.11
LIM2P55344 OR5AK4P-201ENST00000635912 903 ntBASIC1.86□□□□□ -2.11
LIM2P55344 PCDH11Y-203ENST00000362095 4220 ntAPPRIS ALT2 TSL 1 (best) BASIC1.86□□□□□ -2.11
LIM2P55344 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
LIM2P55344 AC009487.4-201ENST00000624969 3585 ntBASIC1.85□□□□□ -2.11
LIM2P55344 Y_RNA.40-201ENST00000362645 93 ntBASIC1.85□□□□□ -2.11
LIM2P55344 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.85□□□□□ -2.11
LIM2P55344 RNU6-1140P-201ENST00000410517 106 ntBASIC1.85□□□□□ -2.11
LIM2P55344 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC1.85□□□□□ -2.11
LIM2P55344 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC1.85□□□□□ -2.11
LIM2P55344 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.85□□□□□ -2.11
LIM2P55344 RPL39P29-201ENST00000447779 157 ntBASIC1.85□□□□□ -2.11
LIM2P55344 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.85□□□□□ -2.11
LIM2P55344 SRRM1P2-201ENST00000464531 1192 ntBASIC1.85□□□□□ -2.11
LIM2P55344 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC1.85□□□□□ -2.11
LIM2P55344 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC1.85□□□□□ -2.11
LIM2P55344 NDUFA5P6-201ENST00000542110 379 ntBASIC1.85□□□□□ -2.11
LIM2P55344 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.85□□□□□ -2.11
LIM2P55344 SNRPGP19-201ENST00000603826 189 ntBASIC1.85□□□□□ -2.11
LIM2P55344 AC087241.4-201ENST00000612441 480 ntBASIC1.85□□□□□ -2.11
LIM2P55344 AC103705.1-201ENST00000619013 241 ntBASIC1.85□□□□□ -2.11
LIM2P55344 AL158209.2-201ENST00000619266 216 ntBASIC1.85□□□□□ -2.11
LIM2P55344 MIR6863-201ENST00000636112 90 ntBASIC1.85□□□□□ -2.11
LIM2P55344 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.11
LIM2P55344 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.84□□□□□ -2.11
LIM2P55344 ANKAR-201ENST00000313581 4391 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
LIM2P55344 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
LIM2P55344 RNU6-212P-201ENST00000362642 104 ntBASIC1.84□□□□□ -2.11
LIM2P55344 RNU6-1285P-201ENST00000363480 105 ntBASIC1.84□□□□□ -2.11
LIM2P55344 RNU6-1141P-201ENST00000364520 107 ntBASIC1.84□□□□□ -2.11
LIM2P55344 RNU6-336P-201ENST00000364891 107 ntBASIC1.84□□□□□ -2.11
LIM2P55344 SNORA25B-201ENST00000365507 128 ntBASIC1.84□□□□□ -2.11
LIM2P55344 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.84□□□□□ -2.11
LIM2P55344 SNORA40.19-201ENST00000390846 128 ntBASIC1.84□□□□□ -2.11
LIM2P55344 OOSP1P1-201ENST00000423265 274 ntBASIC1.84□□□□□ -2.11
LIM2P55344 LINC01650-201ENST00000438093 602 ntTSL 2 BASIC1.84□□□□□ -2.11
LIM2P55344 RPL7P54-201ENST00000438336 674 ntBASIC1.84□□□□□ -2.11
LIM2P55344 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC1.84□□□□□ -2.11
LIM2P55344 AL122001.1-201ENST00000457027 370 ntBASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 149.4 ms