Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AL713866.2-201ENST00000603579 219 ntBASIC1.82□□□□□ -2.12
MSH6P52701 AL355297.2-201ENST00000604792 129 ntBASIC1.82□□□□□ -2.12
MSH6P52701 AC090578.1-201ENST00000604955 591 ntBASIC1.82□□□□□ -2.12
MSH6P52701 AL121992.2-201ENST00000606262 256 ntBASIC1.82□□□□□ -2.12
MSH6P52701 AC091304.6-201ENST00000619761 202 ntBASIC1.82□□□□□ -2.12
MSH6P52701 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC1.82□□□□□ -2.12
MSH6P52701 AC019226.2-201ENST00000625973 424 ntBASIC1.82□□□□□ -2.12
MSH6P52701 MIR3529-201ENST00000637713 78 ntBASIC1.82□□□□□ -2.12
MSH6P52701 SYT14-201ENST00000367015 5094 ntAPPRIS ALT2 TSL 1 (best) BASIC1.82□□□□□ -2.12
MSH6P52701 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC1.81□□□□□ -2.12
MSH6P52701 DEFB114-201ENST00000322066 253 ntAPPRIS P1 TSL 1 (best) BASIC1.81□□□□□ -2.12
MSH6P52701 RNU6-858P-201ENST00000362436 107 ntBASIC1.81□□□□□ -2.12
MSH6P52701 Y_RNA.295-201ENST00000364918 102 ntBASIC1.81□□□□□ -2.12
MSH6P52701 RNU6-203P-201ENST00000384038 104 ntBASIC1.81□□□□□ -2.12
MSH6P52701 RNU6-1179P-201ENST00000384667 107 ntBASIC1.81□□□□□ -2.12
MSH6P52701 MIR10A-201ENST00000385043 110 ntBASIC1.81□□□□□ -2.12
MSH6P52701 AL033519.2-201ENST00000403958 392 ntBASIC1.81□□□□□ -2.12
MSH6P52701 EEF1A1P40-201ENST00000412883 573 ntBASIC1.81□□□□□ -2.12
MSH6P52701 PGBD4P6-201ENST00000421501 610 ntBASIC1.81□□□□□ -2.12
MSH6P52701 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC1.81□□□□□ -2.12
MSH6P52701 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC1.81□□□□□ -2.12
MSH6P52701 AL360271.2-201ENST00000447710 161 ntBASIC1.81□□□□□ -2.12
MSH6P52701 AL033528.1-201ENST00000453780 140 ntBASIC1.81□□□□□ -2.12
MSH6P52701 AC055731.1-201ENST00000474387 401 ntBASIC1.81□□□□□ -2.12
MSH6P52701 AC116562.3-201ENST00000506136 177 ntBASIC1.81□□□□□ -2.12
MSH6P52701 RN7SKP49-201ENST00000516675 260 ntBASIC1.81□□□□□ -2.12
MSH6P52701 RNU6-685P-201ENST00000517088 95 ntBASIC1.81□□□□□ -2.12
MSH6P52701 AC068587.5-201ENST00000528506 175 ntBASIC1.81□□□□□ -2.12
MSH6P52701 AC078899.2-201ENST00000595282 212 ntBASIC1.81□□□□□ -2.12
MSH6P52701 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.81□□□□□ -2.12
MSH6P52701 AL627230.6-201ENST00000611129 280 ntBASIC1.81□□□□□ -2.12
MSH6P52701 RBBP8P1-201ENST00000449447 1844 ntBASIC1.81□□□□□ -2.12
MSH6P52701 ANKRD20A17P-201ENST00000511745 1330 ntBASIC1.8□□□□□ -2.12
MSH6P52701 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
MSH6P52701 HAUS6P2-201ENST00000433254 2404 ntBASIC1.8□□□□□ -2.12
MSH6P52701 RNU6-1010P-201ENST00000362757 107 ntBASIC1.8□□□□□ -2.12
MSH6P52701 RNY4P34-201ENST00000364779 95 ntBASIC1.8□□□□□ -2.12
MSH6P52701 RNU6-487P-201ENST00000365430 104 ntBASIC1.8□□□□□ -2.12
MSH6P52701 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC1.8□□□□□ -2.12
MSH6P52701 RNU6-387P-201ENST00000411331 105 ntBASIC1.8□□□□□ -2.12
MSH6P52701 RPL31P63-201ENST00000422565 375 ntBASIC1.8□□□□□ -2.12
MSH6P52701 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC1.8□□□□□ -2.12
MSH6P52701 AL589986.2-201ENST00000429352 397 ntTSL 2 BASIC1.8□□□□□ -2.12
MSH6P52701 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC1.8□□□□□ -2.12
MSH6P52701 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC1.8□□□□□ -2.12
MSH6P52701 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC1.8□□□□□ -2.12
MSH6P52701 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC1.8□□□□□ -2.12
MSH6P52701 SNORD42A-201ENST00000459584 64 ntBASIC1.8□□□□□ -2.12
MSH6P52701 AC023790.1-201ENST00000482174 347 ntBASIC1.8□□□□□ -2.12
MSH6P52701 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC1.8□□□□□ -2.12
MSH6P52701 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.8□□□□□ -2.12
MSH6P52701 MRPS17P9-201ENST00000511924 393 ntBASIC1.8□□□□□ -2.12
MSH6P52701 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC1.8□□□□□ -2.12
MSH6P52701 AP003033.1-201ENST00000527244 415 ntBASIC1.8□□□□□ -2.12
MSH6P52701 AP003072.2-201ENST00000527756 676 ntBASIC1.8□□□□□ -2.12
MSH6P52701 AL109918.3-201ENST00000603072 338 ntBASIC1.8□□□□□ -2.12
MSH6P52701 AC138649.3-201ENST00000622154 254 ntBASIC1.8□□□□□ -2.12
MSH6P52701 AC093648.1-201ENST00000623546 606 ntBASIC1.8□□□□□ -2.12
MSH6P52701 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC1.8□□□□□ -2.12
MSH6P52701 MTND5P17-201ENST00000418405 1603 ntBASIC1.79□□□□□ -2.12
MSH6P52701 ZBTB8OS-201ENST00000341885 312 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
MSH6P52701 RNU6-179P-201ENST00000363350 107 ntBASIC1.79□□□□□ -2.12
MSH6P52701 RNU6-622P-201ENST00000384272 103 ntBASIC1.79□□□□□ -2.12
MSH6P52701 MT-TH-201ENST00000387441 69 ntBASIC1.79□□□□□ -2.12
MSH6P52701 SNORA40.3-201ENST00000390964 122 ntBASIC1.79□□□□□ -2.12
MSH6P52701 RNA5SP111-201ENST00000411386 101 ntBASIC1.79□□□□□ -2.12
MSH6P52701 HMGN1P14-201ENST00000412459 517 ntBASIC1.79□□□□□ -2.12
MSH6P52701 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC1.79□□□□□ -2.12
MSH6P52701 RPL21P90-201ENST00000415692 466 ntBASIC1.79□□□□□ -2.12
MSH6P52701 LURAP1L-AS1-201ENST00000417638 799 ntTSL 3 BASIC1.79□□□□□ -2.12
MSH6P52701 MTND2P18-201ENST00000419962 1030 ntBASIC1.79□□□□□ -2.12
MSH6P52701 AC007098.1-201ENST00000420122 367 ntBASIC1.79□□□□□ -2.12
MSH6P52701 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC1.79□□□□□ -2.12
MSH6P52701 AC008267.5-201ENST00000424928 265 ntBASIC1.79□□□□□ -2.12
MSH6P52701 AIMP1P2-201ENST00000425294 312 ntBASIC1.79□□□□□ -2.12
MSH6P52701 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC1.79□□□□□ -2.12
MSH6P52701 snoU109.1-201ENST00000459339 135 ntBASIC1.79□□□□□ -2.12
MSH6P52701 AP001025.1-201ENST00000486139 332 ntBASIC1.79□□□□□ -2.12
MSH6P52701 HMGB1P30-201ENST00000492455 606 ntBASIC1.79□□□□□ -2.12
MSH6P52701 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.79□□□□□ -2.12
MSH6P52701 BNIP3P6-201ENST00000549284 499 ntBASIC1.79□□□□□ -2.12
MSH6P52701 AL512791.1-201ENST00000555853 300 ntTSL 3 BASIC1.79□□□□□ -2.12
MSH6P52701 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC1.79□□□□□ -2.12
MSH6P52701 AC073413.2-201ENST00000604332 360 ntBASIC1.79□□□□□ -2.12
MSH6P52701 AC021646.1-201ENST00000605469 484 ntBASIC1.79□□□□□ -2.12
MSH6P52701 NDUFA8P1-201ENST00000605525 367 ntBASIC1.79□□□□□ -2.12
MSH6P52701 AC008250.2-201ENST00000615261 205 ntBASIC1.79□□□□□ -2.12
MSH6P52701 AP001506.1-201ENST00000615444 211 ntBASIC1.79□□□□□ -2.12
MSH6P52701 FARSBP1-201ENST00000435808 1778 ntBASIC1.79□□□□□ -2.12
MSH6P52701 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC1.78□□□□□ -2.12
MSH6P52701 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC1.78□□□□□ -2.12
MSH6P52701 RNU6-37P-201ENST00000362692 107 ntBASIC1.78□□□□□ -2.12
MSH6P52701 RNU6-11P-201ENST00000364234 107 ntBASIC1.78□□□□□ -2.12
MSH6P52701 SNORD115-7-201ENST00000365306 82 ntBASIC1.78□□□□□ -2.12
MSH6P52701 GSTA3-202ENST00000370968 775 ntTSL 1 (best) BASIC1.78□□□□□ -2.12
MSH6P52701 Y_RNA.576-201ENST00000384781 102 ntBASIC1.78□□□□□ -2.12
MSH6P52701 MIR561-201ENST00000385216 97 ntBASIC1.78□□□□□ -2.12
MSH6P52701 MTND3P17-201ENST00000416968 344 ntBASIC1.78□□□□□ -2.12
MSH6P52701 AC074117.2-201ENST00000417130 397 ntBASIC1.78□□□□□ -2.12
MSH6P52701 CALM2P2-201ENST00000428512 440 ntBASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 109.7 ms