Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 AC012306.1-201ENST00000423267 114 ntBASIC4.01□□□□□ -1.77
LIG3P49916 HSPE1P25-201ENST00000455484 251 ntBASIC4.01□□□□□ -1.77
LIG3P49916 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC4.01□□□□□ -1.77
LIG3P49916 RPL7P47-201ENST00000497299 556 ntBASIC4.01□□□□□ -1.77
LIG3P49916 AC137770.1-201ENST00000504620 530 ntTSL 3 BASIC4.01□□□□□ -1.77
LIG3P49916 SNORA70.14-201ENST00000516205 110 ntBASIC4.01□□□□□ -1.77
LIG3P49916 RN7SKP83-201ENST00000516512 178 ntBASIC4.01□□□□□ -1.77
LIG3P49916 RNA5SP54-201ENST00000516951 92 ntBASIC4.01□□□□□ -1.77
LIG3P49916 RNU6-182P-201ENST00000516970 105 ntBASIC4.01□□□□□ -1.77
LIG3P49916 AP000867.2-201ENST00000532468 320 ntBASIC4.01□□□□□ -1.77
LIG3P49916 SNORD113-5-201ENST00000607261 78 ntBASIC4.01□□□□□ -1.77
LIG3P49916 AC092628.2-201ENST00000622492 339 ntBASIC4.01□□□□□ -1.77
LIG3P49916 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC4.01□□□□□ -1.77
LIG3P49916 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4□□□□□ -1.77
LIG3P49916 LINC00890-202ENST00000569275 4595 ntAPPRIS P1 TSL 1 (best) BASIC4□□□□□ -1.77
LIG3P49916 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4□□□□□ -1.77
LIG3P49916 ETV1-202ENST00000399357 6096 ntTSL 2 BASIC4□□□□□ -1.77
LIG3P49916 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
LIG3P49916 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC4□□□□□ -1.77
LIG3P49916 Y_RNA.65-201ENST00000362846 100 ntBASIC4□□□□□ -1.77
LIG3P49916 Y_RNA.277-201ENST00000364754 102 ntBASIC4□□□□□ -1.77
LIG3P49916 RNU1-64P-201ENST00000365443 163 ntBASIC4□□□□□ -1.77
LIG3P49916 Y_RNA.785-201ENST00000384290 109 ntBASIC4□□□□□ -1.77
LIG3P49916 RNU6-19P-201ENST00000384718 107 ntBASIC4□□□□□ -1.77
LIG3P49916 MIR487A-201ENST00000385009 80 ntBASIC4□□□□□ -1.77
LIG3P49916 SNORA53-201ENST00000391141 249 ntBASIC4□□□□□ -1.77
LIG3P49916 SNORD58.1-201ENST00000391313 66 ntBASIC4□□□□□ -1.77
LIG3P49916 HLFP1-201ENST00000402375 499 ntBASIC4□□□□□ -1.77
LIG3P49916 AC245291.1-201ENST00000419501 328 ntBASIC4□□□□□ -1.77
LIG3P49916 AC019205.3-201ENST00000424573 156 ntBASIC4□□□□□ -1.77
LIG3P49916 AL445305.1-201ENST00000432577 575 ntBASIC4□□□□□ -1.77
LIG3P49916 AC010099.1-201ENST00000455434 375 ntBASIC4□□□□□ -1.77
LIG3P49916 AP002884.2-201ENST00000471647 395 ntBASIC4□□□□□ -1.77
LIG3P49916 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC4□□□□□ -1.77
LIG3P49916 SEPT14P8-201ENST00000508026 178 ntBASIC4□□□□□ -1.77
LIG3P49916 SERF1AP1-201ENST00000514575 187 ntBASIC4□□□□□ -1.77
LIG3P49916 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC4□□□□□ -1.77
LIG3P49916 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC4□□□□□ -1.77
LIG3P49916 RN7SL703P-201ENST00000578485 302 ntBASIC4□□□□□ -1.77
LIG3P49916 U2.14-201ENST00000615943 113 ntBASIC4□□□□□ -1.77
LIG3P49916 AL138880.2-201ENST00000616214 239 ntBASIC4□□□□□ -1.77
LIG3P49916 GEN1-201ENST00000317402 9854 ntAPPRIS P1 TSL 2 BASIC4□□□□□ -1.77
LIG3P49916 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4□□□□□ -1.77
LIG3P49916 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4□□□□□ -1.77
LIG3P49916 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC3.99□□□□□ -1.77
LIG3P49916 RNY1-201ENST00000364228 113 ntBASIC3.99□□□□□ -1.77
LIG3P49916 RNU6-198P-201ENST00000384258 104 ntBASIC3.99□□□□□ -1.77
LIG3P49916 RNU6-748P-201ENST00000384648 107 ntBASIC3.99□□□□□ -1.77
LIG3P49916 MIR329-1-201ENST00000385028 80 ntBASIC3.99□□□□□ -1.77
LIG3P49916 EI24P2-201ENST00000397776 1076 ntBASIC3.99□□□□□ -1.77
LIG3P49916 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC3.99□□□□□ -1.77
LIG3P49916 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.99□□□□□ -1.77
LIG3P49916 AL591419.1-201ENST00000427423 339 ntBASIC3.99□□□□□ -1.77
LIG3P49916 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC3.99□□□□□ -1.77
LIG3P49916 RPS29P7-201ENST00000439662 171 ntBASIC3.99□□□□□ -1.77
LIG3P49916 AL714022.1-201ENST00000439897 151 ntBASIC3.99□□□□□ -1.77
LIG3P49916 AL441985.1-201ENST00000457727 251 ntBASIC3.99□□□□□ -1.77
LIG3P49916 AC073901.1-201ENST00000462471 408 ntBASIC3.99□□□□□ -1.77
LIG3P49916 RN7SL271P-201ENST00000487601 295 ntBASIC3.99□□□□□ -1.77
LIG3P49916 RNA5SP179-201ENST00000517284 121 ntBASIC3.99□□□□□ -1.77
LIG3P49916 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.99□□□□□ -1.77
LIG3P49916 AC022080.3-201ENST00000544433 482 ntBASIC3.99□□□□□ -1.77
LIG3P49916 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.99□□□□□ -1.77
LIG3P49916 AK6P2-201ENST00000549020 471 ntBASIC3.99□□□□□ -1.77
LIG3P49916 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.99□□□□□ -1.77
LIG3P49916 AC105137.2-201ENST00000569073 466 ntBASIC3.99□□□□□ -1.77
LIG3P49916 AC037487.3-201ENST00000606668 112 ntBASIC3.99□□□□□ -1.77
LIG3P49916 AL591424.2-201ENST00000617023 128 ntBASIC3.99□□□□□ -1.77
LIG3P49916 HOTTIP_4.1-201ENST00000618195 165 ntBASIC3.99□□□□□ -1.77
LIG3P49916 AC135584.1-201ENST00000624438 333 ntTSL 5 BASIC3.99□□□□□ -1.77
LIG3P49916 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC3.99□□□□□ -1.77
LIG3P49916 LRRN3-203ENST00000422987 3513 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
LIG3P49916 CEP170-215ENST00000481987 3031 ntTSL 5 BASIC3.99□□□□□ -1.77
LIG3P49916 RGPD4-201ENST00000408999 5464 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
LIG3P49916 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.99□□□□□ -1.77
LIG3P49916 PAPOLA-202ENST00000392990 2588 ntTSL 5 BASIC3.99□□□□□ -1.77
LIG3P49916 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC3.99□□□□□ -1.77
LIG3P49916 FIGNL1-202ENST00000395556 3485 ntAPPRIS P1 TSL 2 BASIC3.98□□□□□ -1.77
LIG3P49916 FAM126A-204ENST00000432176 13177 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
LIG3P49916 PGGT1B-203ENST00000419445 9545 ntAPPRIS P1 TSL 1 (best) BASIC3.98□□□□□ -1.77
LIG3P49916 AC007496.3-201ENST00000624987 3443 ntBASIC3.98□□□□□ -1.77
LIG3P49916 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.98□□□□□ -1.77
LIG3P49916 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.98□□□□□ -1.77
LIG3P49916 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC3.98□□□□□ -1.77
LIG3P49916 RGS4-201ENST00000367906 930 ntTSL 1 (best) BASIC3.98□□□□□ -1.77
LIG3P49916 RNU6-1145P-201ENST00000384246 107 ntBASIC3.98□□□□□ -1.77
LIG3P49916 RNU6-21P-201ENST00000384710 107 ntBASIC3.98□□□□□ -1.77
LIG3P49916 AC023141.4-201ENST00000412031 328 ntBASIC3.98□□□□□ -1.77
LIG3P49916 AC083863.1-201ENST00000438811 231 ntBASIC3.98□□□□□ -1.77
LIG3P49916 SNORA71B-202ENST00000439232 272 ntBASIC3.98□□□□□ -1.77
LIG3P49916 HMGB1P37-201ENST00000439613 609 ntBASIC3.98□□□□□ -1.77
LIG3P49916 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC3.98□□□□□ -1.77
LIG3P49916 AP000705.1-201ENST00000454567 350 ntBASIC3.98□□□□□ -1.77
LIG3P49916 RNU7-23P-201ENST00000459465 62 ntBASIC3.98□□□□□ -1.77
LIG3P49916 RN7SL132P-201ENST00000478131 296 ntBASIC3.98□□□□□ -1.77
LIG3P49916 RPL26P26-201ENST00000480251 434 ntBASIC3.98□□□□□ -1.77
LIG3P49916 RNU7-110P-201ENST00000516891 62 ntBASIC3.98□□□□□ -1.77
LIG3P49916 NDUFB9P3-201ENST00000521269 501 ntBASIC3.98□□□□□ -1.77
LIG3P49916 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.98□□□□□ -1.77
LIG3P49916 AC007493.1-202ENST00000567899 517 ntTSL 2 BASIC3.98□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 151.2 ms