Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 RNU6-377P-201ENST00000515965 102 ntBASIC2.52□□□□□ -2.01
MSH3P20585 RN7SKP40-201ENST00000517211 242 ntBASIC2.52□□□□□ -2.01
MSH3P20585 CKS1BP7-201ENST00000522230 235 ntBASIC2.52□□□□□ -2.01
MSH3P20585 GLYCAM1-201ENST00000546596 285 ntBASIC2.52□□□□□ -2.01
MSH3P20585 MIR4790-201ENST00000577799 79 ntBASIC2.52□□□□□ -2.01
MSH3P20585 AL121917.1-203ENST00000605534 577 ntBASIC2.52□□□□□ -2.01
MSH3P20585 AC010297.1-201ENST00000623948 149 ntBASIC2.52□□□□□ -2.01
MSH3P20585 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.52□□□□□ -2.01
MSH3P20585 IL6ST-201ENST00000336909 8776 ntAPPRIS P1 TSL 2 BASIC2.51□□□□□ -2.01
MSH3P20585 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
MSH3P20585 RNU6-797P-201ENST00000363101 109 ntBASIC2.51□□□□□ -2.01
MSH3P20585 RNU4-73P-201ENST00000363164 141 ntBASIC2.51□□□□□ -2.01
MSH3P20585 RNA5SP393-201ENST00000363423 117 ntBASIC2.51□□□□□ -2.01
MSH3P20585 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
MSH3P20585 RNU1-138P-201ENST00000384093 164 ntBASIC2.51□□□□□ -2.01
MSH3P20585 Y_RNA.510-201ENST00000384511 114 ntBASIC2.51□□□□□ -2.01
MSH3P20585 MIR27B-201ENST00000385129 97 ntBASIC2.51□□□□□ -2.01
MSH3P20585 RN7SKP158-201ENST00000410453 326 ntBASIC2.51□□□□□ -2.01
MSH3P20585 AC006026.2-201ENST00000457376 180 ntBASIC2.51□□□□□ -2.01
MSH3P20585 MRPL42P6-201ENST00000486397 371 ntBASIC2.51□□□□□ -2.01
MSH3P20585 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC2.51□□□□□ -2.01
MSH3P20585 AC008549.1-201ENST00000512900 643 ntBASIC2.51□□□□□ -2.01
MSH3P20585 SNORD19.2-201ENST00000516978 73 ntBASIC2.51□□□□□ -2.01
MSH3P20585 RNU4ATAC17P-201ENST00000517272 120 ntBASIC2.51□□□□□ -2.01
MSH3P20585 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC2.51□□□□□ -2.01
MSH3P20585 AC092746.1-201ENST00000542819 562 ntTSL 4 BASIC2.51□□□□□ -2.01
MSH3P20585 CR383656.8-201ENST00000549046 145 ntBASIC2.51□□□□□ -2.01
MSH3P20585 AC103996.1-201ENST00000555468 102 ntBASIC2.51□□□□□ -2.01
MSH3P20585 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC2.51□□□□□ -2.01
MSH3P20585 CERS3-AS1-201ENST00000560643 372 ntTSL 3 BASIC2.51□□□□□ -2.01
MSH3P20585 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC2.51□□□□□ -2.01
MSH3P20585 POLR3GP2-201ENST00000588366 668 ntBASIC2.51□□□□□ -2.01
MSH3P20585 AC006023.1-201ENST00000603944 259 ntBASIC2.51□□□□□ -2.01
MSH3P20585 AC091152.3-201ENST00000604227 325 ntBASIC2.51□□□□□ -2.01
MSH3P20585 MIR6817-201ENST00000615588 66 ntBASIC2.51□□□□□ -2.01
MSH3P20585 AL359697.1-201ENST00000624879 587 ntBASIC2.51□□□□□ -2.01
MSH3P20585 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.51□□□□□ -2.01
MSH3P20585 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC2.51□□□□□ -2.01
MSH3P20585 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.5□□□□□ -2.01
MSH3P20585 AL136360.1-201ENST00000503377 1900 ntBASIC2.5□□□□□ -2.01
MSH3P20585 AC010889.1-201ENST00000566193 2666 ntBASIC2.5□□□□□ -2.01
MSH3P20585 TMPRSS11A-201ENST00000334830 3054 ntAPPRIS P3 TSL 2 BASIC2.5□□□□□ -2.01
MSH3P20585 MT-ND4L-201ENST00000361335 297 ntAPPRIS P1 BASIC2.5□□□□□ -2.01
MSH3P20585 RPS29P13-201ENST00000402041 169 ntBASIC2.5□□□□□ -2.01
MSH3P20585 AC096649.2-201ENST00000416186 393 ntBASIC2.5□□□□□ -2.01
MSH3P20585 RPS3AP52-201ENST00000435639 297 ntBASIC2.5□□□□□ -2.01
MSH3P20585 FABP5P14-201ENST00000437273 393 ntBASIC2.5□□□□□ -2.01
MSH3P20585 KRTAP19-11P-201ENST00000439851 104 ntBASIC2.5□□□□□ -2.01
MSH3P20585 AC107399.1-201ENST00000451226 265 ntBASIC2.5□□□□□ -2.01
MSH3P20585 RNU6-1037P-201ENST00000459571 107 ntBASIC2.5□□□□□ -2.01
MSH3P20585 MTND4P17-201ENST00000470444 350 ntBASIC2.5□□□□□ -2.01
MSH3P20585 RPS27P27-201ENST00000498779 255 ntBASIC2.5□□□□□ -2.01
MSH3P20585 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC2.5□□□□□ -2.01
MSH3P20585 RN7SKP24-201ENST00000515888 284 ntBASIC2.5□□□□□ -2.01
MSH3P20585 ACA59.2-201ENST00000517061 156 ntBASIC2.5□□□□□ -2.01
MSH3P20585 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.5□□□□□ -2.01
MSH3P20585 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.5□□□□□ -2.01
MSH3P20585 TRAV32-201ENST00000553993 340 ntBASIC2.5□□□□□ -2.01
MSH3P20585 MIR4446-201ENST00000578505 67 ntBASIC2.5□□□□□ -2.01
MSH3P20585 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC2.5□□□□□ -2.01
MSH3P20585 AL049779.4-201ENST00000604500 156 ntBASIC2.5□□□□□ -2.01
MSH3P20585 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.5□□□□□ -2.01
MSH3P20585 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.5□□□□□ -2.01
MSH3P20585 AC004944.1-201ENST00000517807 3059 ntBASIC2.5□□□□□ -2.01
MSH3P20585 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.5□□□□□ -2.01
MSH3P20585 Y_RNA.61-201ENST00000362835 102 ntBASIC2.49□□□□□ -2.01
MSH3P20585 RNU6-428P-201ENST00000362942 107 ntBASIC2.49□□□□□ -2.01
MSH3P20585 RNA5SP68-201ENST00000363885 119 ntBASIC2.49□□□□□ -2.01
MSH3P20585 AL030996.1-201ENST00000411430 235 ntBASIC2.49□□□□□ -2.01
MSH3P20585 RPL37P10-201ENST00000412884 288 ntBASIC2.49□□□□□ -2.01
MSH3P20585 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.49□□□□□ -2.01
MSH3P20585 AC104389.3-201ENST00000445629 235 ntBASIC2.49□□□□□ -2.01
MSH3P20585 RNU7-187P-201ENST00000458985 68 ntBASIC2.49□□□□□ -2.01
MSH3P20585 RPL39P5-202ENST00000512505 151 ntBASIC2.49□□□□□ -2.01
MSH3P20585 AC126768.3-201ENST00000514519 560 ntTSL 4 BASIC2.49□□□□□ -2.01
MSH3P20585 RNU6ATAC13P-201ENST00000516152 131 ntBASIC2.49□□□□□ -2.01
MSH3P20585 RNA5SP148-201ENST00000516527 94 ntBASIC2.49□□□□□ -2.01
MSH3P20585 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC2.49□□□□□ -2.01
MSH3P20585 AL355375.2-201ENST00000574825 175 ntBASIC2.49□□□□□ -2.01
MSH3P20585 AC009163.5-201ENST00000575421 637 ntBASIC2.49□□□□□ -2.01
MSH3P20585 MIR3162-201ENST00000581818 82 ntBASIC2.49□□□□□ -2.01
MSH3P20585 AC113139.1-201ENST00000605049 239 ntBASIC2.49□□□□□ -2.01
MSH3P20585 U4.3-201ENST00000621047 82 ntBASIC2.49□□□□□ -2.01
MSH3P20585 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.49□□□□□ -2.01
MSH3P20585 AC080100.1-201ENST00000624239 5356 ntBASIC2.49□□□□□ -2.01
MSH3P20585 Y_RNA.111-201ENST00000363248 100 ntBASIC2.48□□□□□ -2.01
MSH3P20585 RNU6-105P-201ENST00000363909 104 ntBASIC2.48□□□□□ -2.01
MSH3P20585 SNORA68.1-201ENST00000364537 132 ntBASIC2.48□□□□□ -2.01
MSH3P20585 RNU6-336P-201ENST00000364891 107 ntBASIC2.48□□□□□ -2.01
MSH3P20585 SET-203ENST00000372688 801 ntTSL 2 BASIC2.48□□□□□ -2.01
MSH3P20585 Y_RNA.509-201ENST00000384506 99 ntBASIC2.48□□□□□ -2.01
MSH3P20585 SNORD116-20-201ENST00000384529 92 ntBASIC2.48□□□□□ -2.01
MSH3P20585 RNU6-19P-201ENST00000384718 107 ntBASIC2.48□□□□□ -2.01
MSH3P20585 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.48□□□□□ -2.01
MSH3P20585 AL513475.1-201ENST00000406602 315 ntBASIC2.48□□□□□ -2.01
MSH3P20585 RNU4-14P-201ENST00000410858 122 ntBASIC2.48□□□□□ -2.01
MSH3P20585 AC074117.2-201ENST00000417130 397 ntBASIC2.48□□□□□ -2.01
MSH3P20585 AC092427.1-202ENST00000430569 476 ntBASIC2.48□□□□□ -2.01
MSH3P20585 MTND3P23-201ENST00000431980 347 ntBASIC2.48□□□□□ -2.01
MSH3P20585 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.48□□□□□ -2.01
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms