Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 AC010153.1-201ENST00000432862 727 ntBASIC-0.32□□□□□ -2.46
HMGA1P17096 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC-0.32□□□□□ -2.46
HMGA1P17096 AC005094.1-201ENST00000440420 368 ntBASIC-0.32□□□□□ -2.46
HMGA1P17096 AL121580.1-201ENST00000449941 219 ntTSL 3 BASIC-0.32□□□□□ -2.46
HMGA1P17096 AC082650.1-201ENST00000503542 575 ntTSL 4 BASIC-0.32□□□□□ -2.46
HMGA1P17096 ACA59.2-201ENST00000517061 156 ntBASIC-0.32□□□□□ -2.46
HMGA1P17096 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC-0.32□□□□□ -2.46
HMGA1P17096 MIR4764-201ENST00000580680 88 ntBASIC-0.32□□□□□ -2.46
HMGA1P17096 AC034229.4-201ENST00000607861 441 ntBASIC-0.32□□□□□ -2.46
HMGA1P17096 AL603758.1-201ENST00000618654 241 ntBASIC-0.32□□□□□ -2.46
HMGA1P17096 AC008781.3-201ENST00000622826 335 ntTSL 2 BASIC-0.32□□□□□ -2.46
HMGA1P17096 C8orf59-201ENST00000321777 325 ntTSL 1 (best) BASIC-0.33□□□□□ -2.46
HMGA1P17096 MIR140-201ENST00000385282 100 ntBASIC-0.33□□□□□ -2.46
HMGA1P17096 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC-0.33□□□□□ -2.46
HMGA1P17096 AC244098.3-201ENST00000424803 96 ntBASIC-0.33□□□□□ -2.46
HMGA1P17096 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC-0.33□□□□□ -2.46
HMGA1P17096 MTND5P2-201ENST00000442927 1142 ntBASIC-0.33□□□□□ -2.46
HMGA1P17096 CEP70-205ENST00000464035 1054 ntTSL 1 (best) BASIC-0.33□□□□□ -2.46
HMGA1P17096 RPS26P48-201ENST00000491713 339 ntBASIC-0.33□□□□□ -2.46
HMGA1P17096 MTND1P22-201ENST00000510572 951 ntBASIC-0.33□□□□□ -2.46
HMGA1P17096 AC091874.1-201ENST00000511402 339 ntBASIC-0.33□□□□□ -2.46
HMGA1P17096 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC-0.33□□□□□ -2.46
HMGA1P17096 MRPS36P5-201ENST00000551909 298 ntBASIC-0.33□□□□□ -2.46
HMGA1P17096 AL121821.1-201ENST00000557067 530 ntTSL 3 BASIC-0.33□□□□□ -2.46
HMGA1P17096 AP001429.1-201ENST00000602568 530 ntBASIC-0.33□□□□□ -2.46
HMGA1P17096 AL513534.2-201ENST00000603836 250 ntBASIC-0.33□□□□□ -2.46
HMGA1P17096 SNORD114-31-201ENST00000363219 75 ntBASIC-0.34□□□□□ -2.46
HMGA1P17096 RNU6-815P-201ENST00000384080 113 ntBASIC-0.34□□□□□ -2.46
HMGA1P17096 RN7SKP266-201ENST00000410232 287 ntBASIC-0.34□□□□□ -2.46
HMGA1P17096 MIR1912-201ENST00000410389 80 ntBASIC-0.34□□□□□ -2.46
HMGA1P17096 PSMA6P3-201ENST00000428242 164 ntBASIC-0.34□□□□□ -2.46
HMGA1P17096 TXNL1P1-201ENST00000429528 554 ntBASIC-0.34□□□□□ -2.46
HMGA1P17096 ZFAND6P1-201ENST00000434138 605 ntBASIC-0.34□□□□□ -2.46
HMGA1P17096 AL162395.1-201ENST00000457882 422 ntBASIC-0.34□□□□□ -2.46
HMGA1P17096 NCOR1P1-201ENST00000478176 406 ntTSL 1 (best) BASIC-0.34□□□□□ -2.46
HMGA1P17096 AC104982.1-201ENST00000478775 574 ntBASIC-0.34□□□□□ -2.46
HMGA1P17096 MTND1P3-201ENST00000484956 952 ntBASIC-0.34□□□□□ -2.46
HMGA1P17096 COX7A2P2-201ENST00000505291 250 ntBASIC-0.34□□□□□ -2.46
HMGA1P17096 AC117525.1-201ENST00000515228 503 ntBASIC-0.34□□□□□ -2.46
HMGA1P17096 RNU2-53P-201ENST00000516257 147 ntBASIC-0.34□□□□□ -2.46
HMGA1P17096 AL353997.4-201ENST00000586196 166 ntBASIC-0.34□□□□□ -2.46
HMGA1P17096 AC011155.2-201ENST00000623202 216 ntBASIC-0.34□□□□□ -2.46
HMGA1P17096 SNORD3E-201ENST00000362899 217 ntBASIC-0.35□□□□□ -2.47
HMGA1P17096 Y_RNA.185-201ENST00000363894 100 ntBASIC-0.35□□□□□ -2.47
HMGA1P17096 RNU6-878P-201ENST00000384578 110 ntBASIC-0.35□□□□□ -2.47
HMGA1P17096 MIR644A-201ENST00000385262 94 ntBASIC-0.35□□□□□ -2.47
HMGA1P17096 RNU6-952P-201ENST00000391164 108 ntBASIC-0.35□□□□□ -2.47
HMGA1P17096 NFU1P2-201ENST00000448700 469 ntBASIC-0.35□□□□□ -2.47
HMGA1P17096 MTCO3P2-201ENST00000457365 171 ntBASIC-0.35□□□□□ -2.47
HMGA1P17096 snoU13.25-201ENST00000458945 104 ntBASIC-0.35□□□□□ -2.47
HMGA1P17096 LINC02066-201ENST00000492731 580 ntTSL 4 BASIC-0.35□□□□□ -2.47
HMGA1P17096 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC-0.35□□□□□ -2.47
HMGA1P17096 SCARNA8-201ENST00000515924 131 ntBASIC-0.35□□□□□ -2.47
HMGA1P17096 SNORD60.2-201ENST00000516883 86 ntBASIC-0.35□□□□□ -2.47
HMGA1P17096 IGLVI-20-201ENST00000519296 130 ntBASIC-0.35□□□□□ -2.47
HMGA1P17096 AC007834.2-201ENST00000536310 343 ntBASIC-0.35□□□□□ -2.47
HMGA1P17096 AC018630.3-201ENST00000542637 96 ntBASIC-0.35□□□□□ -2.47
HMGA1P17096 AC004217.3-201ENST00000551552 878 ntBASIC-0.35□□□□□ -2.47
HMGA1P17096 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC-0.35□□□□□ -2.47
HMGA1P17096 AC068620.3-201ENST00000602749 560 ntBASIC-0.35□□□□□ -2.47
HMGA1P17096 AC104408.1-201ENST00000605241 170 ntBASIC-0.35□□□□□ -2.47
HMGA1P17096 AC107952.2-201ENST00000606048 486 ntBASIC-0.35□□□□□ -2.47
HMGA1P17096 SNORD3E-202ENST00000627253 216 ntBASIC-0.35□□□□□ -2.47
HMGA1P17096 CAPZA2-214ENST00000628758 525 ntTSL 5 BASIC-0.35□□□□□ -2.47
HMGA1P17096 MIR1248-201ENST00000629190 106 ntBASIC-0.35□□□□□ -2.47
HMGA1P17096 AC010615.1-201ENST00000594254 1764 ntBASIC-0.35□□□□□ -2.47
HMGA1P17096 SNORD114-19-201ENST00000363072 75 ntBASIC-0.36□□□□□ -2.47
HMGA1P17096 RNU6-833P-201ENST00000363486 107 ntBASIC-0.36□□□□□ -2.47
HMGA1P17096 UBE2V1P10-201ENST00000414685 269 ntBASIC-0.36□□□□□ -2.47
HMGA1P17096 LINC00189-202ENST00000431661 308 ntTSL 5 BASIC-0.36□□□□□ -2.47
HMGA1P17096 AL357793.2-201ENST00000447056 850 ntTSL 3 BASIC-0.36□□□□□ -2.47
HMGA1P17096 snoU13.27-201ENST00000459278 104 ntBASIC-0.36□□□□□ -2.47
HMGA1P17096 RPL39P38-201ENST00000467018 153 ntBASIC-0.36□□□□□ -2.47
HMGA1P17096 LINC02032-201ENST00000490465 391 ntTSL 2 BASIC-0.36□□□□□ -2.47
HMGA1P17096 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC-0.36□□□□□ -2.47
HMGA1P17096 AC024589.1-201ENST00000512207 263 ntBASIC-0.36□□□□□ -2.47
HMGA1P17096 AC112206.3-201ENST00000514578 389 ntBASIC-0.36□□□□□ -2.47
HMGA1P17096 LINC01337-201ENST00000515871 440 ntTSL 3 BASIC-0.36□□□□□ -2.47
HMGA1P17096 RNU6-947P-201ENST00000516264 106 ntBASIC-0.36□□□□□ -2.47
HMGA1P17096 RNU5B-3P-201ENST00000516601 115 ntBASIC-0.36□□□□□ -2.47
HMGA1P17096 UTP23-205ENST00000520733 369 ntTSL 3 BASIC-0.36□□□□□ -2.47
HMGA1P17096 AC068993.2-201ENST00000546563 395 ntTSL 5 BASIC-0.36□□□□□ -2.47
HMGA1P17096 AC079035.1-201ENST00000551713 848 ntTSL 1 (best) BASIC-0.36□□□□□ -2.47
HMGA1P17096 AL442163.3-201ENST00000554110 156 ntBASIC-0.36□□□□□ -2.47
HMGA1P17096 AC126365.2-201ENST00000580630 379 ntBASIC-0.36□□□□□ -2.47
HMGA1P17096 AC011509.1-201ENST00000589512 164 ntTSL 3 BASIC-0.36□□□□□ -2.47
HMGA1P17096 AC073410.2-201ENST00000603240 332 ntBASIC-0.36□□□□□ -2.47
HMGA1P17096 AC112250.2-201ENST00000609450 491 ntTSL 3 BASIC-0.36□□□□□ -2.47
HMGA1P17096 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC-0.36□□□□□ -2.47
HMGA1P17096 BIRC6-AS2-201ENST00000623382 589 ntTSL 2 BASIC-0.36□□□□□ -2.47
HMGA1P17096 CASC19-280ENST00000642102 1351 ntBASIC-0.36□□□□□ -2.47
HMGA1P17096 RNA5SP128-201ENST00000365305 116 ntBASIC-0.37□□□□□ -2.47
HMGA1P17096 SNORA4.3-201ENST00000365564 137 ntBASIC-0.37□□□□□ -2.47
HMGA1P17096 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC-0.37□□□□□ -2.47
HMGA1P17096 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC-0.37□□□□□ -2.47
HMGA1P17096 OR6C5P-201ENST00000452388 923 ntBASIC-0.37□□□□□ -2.47
HMGA1P17096 KRTAP13-6P-201ENST00000508999 371 ntBASIC-0.37□□□□□ -2.47
HMGA1P17096 NAF1-205ENST00000509434 385 ntTSL 3 BASIC-0.37□□□□□ -2.47
HMGA1P17096 AC079140.3-201ENST00000511111 550 ntBASIC-0.37□□□□□ -2.47
HMGA1P17096 RNA5SP395-201ENST00000516567 118 ntBASIC-0.37□□□□□ -2.47
Retrieved 100 of 98,524 protein–RNA pairs in 102.4 ms