Protein–RNA interactions for Protein: P10747

CD28, T-cell-specific surface glycoprotein CD28, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD28P10747 AL355076.2-202ENST00000553754 574 ntTSL 4 BASIC1.34□□□□□ -2.19
CD28P10747 MTCO3P23-201ENST00000561363 289 ntBASIC1.34□□□□□ -2.19
CD28P10747 MIR4498-201ENST00000577599 66 ntBASIC1.34□□□□□ -2.19
CD28P10747 Z94722.1-201ENST00000604328 474 ntBASIC1.34□□□□□ -2.19
CD28P10747 AC005296.1-201ENST00000616145 209 ntBASIC1.34□□□□□ -2.19
CD28P10747 Y_RNA.4-201ENST00000362333 112 ntBASIC1.33□□□□□ -2.2
CD28P10747 RNU6-212P-201ENST00000362642 104 ntBASIC1.33□□□□□ -2.2
CD28P10747 RNU6-715P-201ENST00000365204 103 ntBASIC1.33□□□□□ -2.2
CD28P10747 RNU4-48P-201ENST00000365559 182 ntBASIC1.33□□□□□ -2.2
CD28P10747 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.33□□□□□ -2.2
CD28P10747 RNU6-116P-201ENST00000384042 109 ntBASIC1.33□□□□□ -2.2
CD28P10747 U8.10-201ENST00000384260 133 ntBASIC1.33□□□□□ -2.2
CD28P10747 RNU6ATAC3P-201ENST00000387974 126 ntBASIC1.33□□□□□ -2.2
CD28P10747 RNU4-62P-201ENST00000410125 130 ntBASIC1.33□□□□□ -2.2
CD28P10747 LINC01065-201ENST00000417989 577 ntTSL 3 BASIC1.33□□□□□ -2.2
CD28P10747 CBX3P6-201ENST00000430257 527 ntBASIC1.33□□□□□ -2.2
CD28P10747 RPL31P35-201ENST00000431058 377 ntBASIC1.33□□□□□ -2.2
CD28P10747 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.33□□□□□ -2.2
CD28P10747 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC1.33□□□□□ -2.2
CD28P10747 AC079448.1-201ENST00000449377 373 ntBASIC1.33□□□□□ -2.2
CD28P10747 AL162395.1-201ENST00000457882 422 ntBASIC1.33□□□□□ -2.2
CD28P10747 RNU6-1053P-201ENST00000515930 101 ntBASIC1.33□□□□□ -2.2
CD28P10747 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC1.33□□□□□ -2.2
CD28P10747 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC1.33□□□□□ -2.2
CD28P10747 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC1.33□□□□□ -2.2
CD28P10747 COPS8P3-201ENST00000526024 482 ntBASIC1.33□□□□□ -2.2
CD28P10747 AP005435.4-201ENST00000529514 284 ntBASIC1.33□□□□□ -2.2
CD28P10747 AP002453.2-201ENST00000533503 320 ntBASIC1.33□□□□□ -2.2
CD28P10747 ZNF84-205ENST00000535439 647 ntTSL 5 BASIC1.33□□□□□ -2.2
CD28P10747 AC022254.1-201ENST00000567857 235 ntBASIC1.33□□□□□ -2.2
CD28P10747 MIR4303-201ENST00000581299 66 ntBASIC1.33□□□□□ -2.2
CD28P10747 AC078795.2-201ENST00000602835 1252 ntBASIC1.33□□□□□ -2.2
CD28P10747 AC018889.1-201ENST00000605372 397 ntBASIC1.33□□□□□ -2.2
CD28P10747 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC1.33□□□□□ -2.2
CD28P10747 AL773524.1-201ENST00000614065 229 ntBASIC1.33□□□□□ -2.2
CD28P10747 SEPT14P19-203ENST00000633205 211 ntBASIC1.33□□□□□ -2.2
CD28P10747 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.33□□□□□ -2.2
CD28P10747 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC1.33□□□□□ -2.2
CD28P10747 AL354685.2-201ENST00000448218 1447 ntBASIC1.32□□□□□ -2.2
CD28P10747 RNU6-1164P-201ENST00000364428 107 ntBASIC1.32□□□□□ -2.2
CD28P10747 Y_RNA.324-201ENST00000365165 102 ntBASIC1.32□□□□□ -2.2
CD28P10747 SNORD14D-201ENST00000384390 87 ntBASIC1.32□□□□□ -2.2
CD28P10747 RNU6-606P-201ENST00000384721 111 ntBASIC1.32□□□□□ -2.2
CD28P10747 MIR1-2-201ENST00000384961 85 ntBASIC1.32□□□□□ -2.2
CD28P10747 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC1.32□□□□□ -2.2
CD28P10747 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC1.32□□□□□ -2.2
CD28P10747 AL049545.1-201ENST00000401856 572 ntBASIC1.32□□□□□ -2.2
CD28P10747 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC1.32□□□□□ -2.2
CD28P10747 PIGFP2-201ENST00000421400 651 ntBASIC1.32□□□□□ -2.2
CD28P10747 MTCO2P34-201ENST00000421994 607 ntBASIC1.32□□□□□ -2.2
CD28P10747 AL358453.1-201ENST00000422522 250 ntBASIC1.32□□□□□ -2.2
CD28P10747 RPL31P63-201ENST00000422565 375 ntBASIC1.32□□□□□ -2.2
CD28P10747 EIF4EP2-201ENST00000422816 654 ntBASIC1.32□□□□□ -2.2
CD28P10747 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC1.32□□□□□ -2.2
CD28P10747 AC092447.3-201ENST00000426027 686 ntBASIC1.32□□□□□ -2.2
CD28P10747 AL031667.1-201ENST00000440222 725 ntBASIC1.32□□□□□ -2.2
CD28P10747 MTND2P4-201ENST00000445034 1004 ntBASIC1.32□□□□□ -2.2
CD28P10747 RPL39P29-201ENST00000447779 157 ntBASIC1.32□□□□□ -2.2
CD28P10747 SNRPGP9-201ENST00000456025 225 ntBASIC1.32□□□□□ -2.2
CD28P10747 RPL30P12-201ENST00000474666 353 ntBASIC1.32□□□□□ -2.2
CD28P10747 AC106892.1-201ENST00000491608 406 ntTSL 3 BASIC1.32□□□□□ -2.2
CD28P10747 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC1.32□□□□□ -2.2
CD28P10747 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC1.32□□□□□ -2.2
CD28P10747 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC1.32□□□□□ -2.2
CD28P10747 PTP4A1P4-201ENST00000512479 322 ntBASIC1.32□□□□□ -2.2
CD28P10747 AC008700.1-202ENST00000513657 468 ntTSL 5 BASIC1.32□□□□□ -2.2
CD28P10747 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC1.32□□□□□ -2.2
CD28P10747 LRRC34P2-201ENST00000514850 553 ntBASIC1.32□□□□□ -2.2
CD28P10747 SNORA18.6-201ENST00000516792 115 ntBASIC1.32□□□□□ -2.2
CD28P10747 AC023050.3-201ENST00000541142 333 ntBASIC1.32□□□□□ -2.2
CD28P10747 MIR4703-201ENST00000577728 79 ntBASIC1.32□□□□□ -2.2
CD28P10747 MIR3618-201ENST00000580330 88 ntBASIC1.32□□□□□ -2.2
CD28P10747 AC008752.3-201ENST00000588113 712 ntBASIC1.32□□□□□ -2.2
CD28P10747 VN1R107P-201ENST00000601784 209 ntBASIC1.32□□□□□ -2.2
CD28P10747 AL670379.2-201ENST00000604983 252 ntBASIC1.32□□□□□ -2.2
CD28P10747 MIR98-201ENST00000606724 119 ntBASIC1.32□□□□□ -2.2
CD28P10747 snoU13.31-201ENST00000607291 104 ntBASIC1.32□□□□□ -2.2
CD28P10747 AC087683.2-201ENST00000611384 326 ntBASIC1.32□□□□□ -2.2
CD28P10747 AC090517.3-201ENST00000625170 141 ntBASIC1.32□□□□□ -2.2
CD28P10747 U6.114-201ENST00000636407 96 ntBASIC1.32□□□□□ -2.2
CD28P10747 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
CD28P10747 AP000560.1-201ENST00000624150 1937 ntBASIC1.31□□□□□ -2.2
CD28P10747 RNA5SP276-201ENST00000362580 94 ntBASIC1.31□□□□□ -2.2
CD28P10747 RNU6-1287P-201ENST00000362914 107 ntBASIC1.31□□□□□ -2.2
CD28P10747 Y_RNA.238-201ENST00000364441 102 ntBASIC1.31□□□□□ -2.2
CD28P10747 RNU6-282P-201ENST00000365357 103 ntBASIC1.31□□□□□ -2.2
CD28P10747 RNU6-1029P-201ENST00000384109 107 ntBASIC1.31□□□□□ -2.2
CD28P10747 RNU6-1060P-201ENST00000384664 107 ntBASIC1.31□□□□□ -2.2
CD28P10747 RNY3P10-201ENST00000384764 102 ntBASIC1.31□□□□□ -2.2
CD28P10747 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC1.31□□□□□ -2.2
CD28P10747 C1DP2-201ENST00000418167 426 ntBASIC1.31□□□□□ -2.2
CD28P10747 AC244636.1-201ENST00000421152 228 ntBASIC1.31□□□□□ -2.2
CD28P10747 AC133104.1-201ENST00000429100 218 ntBASIC1.31□□□□□ -2.2
CD28P10747 PCDH9-AS1-201ENST00000430861 532 ntTSL 2 BASIC1.31□□□□□ -2.2
CD28P10747 AC245102.2-201ENST00000448956 180 ntBASIC1.31□□□□□ -2.2
CD28P10747 AC022364.2-201ENST00000457963 554 ntBASIC1.31□□□□□ -2.2
CD28P10747 AC022447.4-201ENST00000504053 364 ntBASIC1.31□□□□□ -2.2
CD28P10747 RNU5F-2P-201ENST00000516066 82 ntBASIC1.31□□□□□ -2.2
CD28P10747 RNA5SP503-201ENST00000517047 117 ntBASIC1.31□□□□□ -2.2
CD28P10747 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC1.31□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms