Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 RNU7-182P-201ENST00000459009 62 ntBASIC1.7□□□□□ -2.14
CLDN9O95484 HMGB3P17-201ENST00000504195 649 ntBASIC1.7□□□□□ -2.14
CLDN9O95484 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC1.7□□□□□ -2.14
CLDN9O95484 AC104136.1-201ENST00000512969 394 ntBASIC1.7□□□□□ -2.14
CLDN9O95484 AP005639.2-201ENST00000527592 928 ntBASIC1.7□□□□□ -2.14
CLDN9O95484 AL352984.1-201ENST00000556949 276 ntTSL 3 BASIC1.7□□□□□ -2.14
CLDN9O95484 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.7□□□□□ -2.14
CLDN9O95484 AL078605.1-201ENST00000603529 500 ntBASIC1.7□□□□□ -2.14
CLDN9O95484 AC091304.6-201ENST00000619761 202 ntBASIC1.7□□□□□ -2.14
CLDN9O95484 U4.7-201ENST00000638126 106 ntBASIC1.7□□□□□ -2.14
CLDN9O95484 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC1.7□□□□□ -2.14
CLDN9O95484 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.7□□□□□ -2.14
CLDN9O95484 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
CLDN9O95484 LRRC69-201ENST00000343709 720 ntTSL 2 BASIC1.69□□□□□ -2.14
CLDN9O95484 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
CLDN9O95484 RNU6-37P-201ENST00000362692 107 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 RNU6-11P-201ENST00000364234 107 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 SNORD48-201ENST00000364953 64 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 Y_RNA.324-201ENST00000365165 102 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 RNU6-108P-201ENST00000365558 107 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
CLDN9O95484 RNU6-25P-201ENST00000383873 107 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 RNU6-1-201ENST00000383898 107 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 RNU6-48P-201ENST00000384161 107 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 RNU6-36P-201ENST00000384172 107 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 RNU6-4P-201ENST00000384205 107 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 RNU6-5P-201ENST00000384238 107 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 RNU6-3P-201ENST00000384314 107 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 RNU6-16P-201ENST00000384385 107 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 RNU6-15P-201ENST00000384534 107 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 SNORA8-201ENST00000384574 139 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 RNU6-2-201ENST00000384627 107 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 RNU6-297P-201ENST00000384636 107 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 RNU6-29P-201ENST00000384637 107 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 RNY3P10-201ENST00000384764 102 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 RNU6-9-201ENST00000384776 107 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 RNU6-33P-201ENST00000384793 107 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 SNORA26.8-201ENST00000391306 124 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 FGF7P8-201ENST00000402994 292 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 AL356432.1-201ENST00000405809 419 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 RNU6-1245P-201ENST00000411130 106 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC1.69□□□□□ -2.14
CLDN9O95484 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.69□□□□□ -2.14
CLDN9O95484 IFNA20P-201ENST00000436840 528 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 RPL7P54-201ENST00000438336 674 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 AL360091.3-201ENST00000442146 387 ntTSL 5 BASIC1.69□□□□□ -2.14
CLDN9O95484 AC097460.1-201ENST00000514624 590 ntTSL 3 BASIC1.69□□□□□ -2.14
CLDN9O95484 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC1.69□□□□□ -2.14
CLDN9O95484 MIR4775-201ENST00000581168 75 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 AC113137.1-201ENST00000591869 558 ntTSL 4 BASIC1.69□□□□□ -2.14
CLDN9O95484 AC011494.1-201ENST00000596454 237 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 AC064872.1-201ENST00000604823 1072 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 RNU6-6P-201ENST00000606623 107 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 snoU13.31-201ENST00000607291 104 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 MIR8081-201ENST00000611533 95 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 SEPT14P19-203ENST00000633205 211 ntBASIC1.69□□□□□ -2.14
CLDN9O95484 ANKRD20A17P-201ENST00000511745 1330 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 FGF7P2-201ENST00000332473 296 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 RNY1P10-201ENST00000363268 113 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 RNU6-1097P-201ENST00000363586 107 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 RNU6-105P-201ENST00000363909 104 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC1.68□□□□□ -2.14
CLDN9O95484 RNU6-1029P-201ENST00000384109 107 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 RNU6-1222P-201ENST00000384615 107 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 MIR583-201ENST00000384846 75 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 RNA5SP213-201ENST00000391031 106 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 AL669831.1-202ENST00000428504 417 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 AL645568.3-201ENST00000433683 316 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 AL596276.1-201ENST00000434465 418 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 GTF2IP13-201ENST00000438487 386 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC1.68□□□□□ -2.14
CLDN9O95484 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.68□□□□□ -2.14
CLDN9O95484 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.68□□□□□ -2.14
CLDN9O95484 RNA5SP57-201ENST00000459463 123 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 SNRPGP7-201ENST00000469016 106 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.68□□□□□ -2.14
CLDN9O95484 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC1.68□□□□□ -2.14
CLDN9O95484 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.68□□□□□ -2.14
CLDN9O95484 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC1.68□□□□□ -2.14
CLDN9O95484 CFAP100-207ENST00000510833 481 ntAPPRIS ALT2 TSL 3 BASIC1.68□□□□□ -2.14
CLDN9O95484 SNORD27.1-201ENST00000516319 72 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 RNU6-295P-201ENST00000516901 104 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 AC023200.1-201ENST00000519660 651 ntTSL 3 BASIC1.68□□□□□ -2.14
CLDN9O95484 AP003072.2-201ENST00000527756 676 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC1.68□□□□□ -2.14
CLDN9O95484 AC245014.2-201ENST00000603689 287 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 SEPT7P9-203ENST00000604116 343 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 AC246785.4-201ENST00000605374 287 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 AC006566.1-201ENST00000608943 513 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 AC104073.3-201ENST00000610942 955 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC1.68□□□□□ -2.14
CLDN9O95484 MIR6845-201ENST00000613182 61 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 AL603755.1-201ENST00000619504 163 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 AC091931.1-201ENST00000623488 728 ntBASIC1.68□□□□□ -2.14
CLDN9O95484 RNU6-1164P-201ENST00000364428 107 ntBASIC1.67□□□□□ -2.14
CLDN9O95484 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC1.67□□□□□ -2.14
CLDN9O95484 BX295541.1-201ENST00000417774 250 ntBASIC1.67□□□□□ -2.14
CLDN9O95484 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.67□□□□□ -2.14
CLDN9O95484 CBX3P6-201ENST00000430257 527 ntBASIC1.67□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 87.3 ms