Protein–RNA interactions for Protein: O15551

CLDN3, Claudin-3, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN3O15551 AL627390.1-201ENST00000396055 340 ntBASIC1.88□□□□□ -2.11
CLDN3O15551 MTND2P18-201ENST00000419962 1030 ntBASIC1.88□□□□□ -2.11
CLDN3O15551 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.88□□□□□ -2.11
CLDN3O15551 AL451074.3-201ENST00000437709 472 ntBASIC1.88□□□□□ -2.11
CLDN3O15551 MTND2P29-201ENST00000438595 412 ntBASIC1.88□□□□□ -2.11
CLDN3O15551 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.88□□□□□ -2.11
CLDN3O15551 HMGB3P17-201ENST00000504195 649 ntBASIC1.88□□□□□ -2.11
CLDN3O15551 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.88□□□□□ -2.11
CLDN3O15551 SNORD27.1-201ENST00000516319 72 ntBASIC1.88□□□□□ -2.11
CLDN3O15551 AC115990.1-201ENST00000526957 301 ntBASIC1.88□□□□□ -2.11
CLDN3O15551 AP005639.2-201ENST00000527592 928 ntBASIC1.88□□□□□ -2.11
CLDN3O15551 AP003072.2-201ENST00000527756 676 ntBASIC1.88□□□□□ -2.11
CLDN3O15551 MIR4524B-201ENST00000581569 115 ntBASIC1.88□□□□□ -2.11
CLDN3O15551 Z99289.3-201ENST00000605586 594 ntBASIC1.88□□□□□ -2.11
CLDN3O15551 AL022345.1-201ENST00000607292 135 ntBASIC1.88□□□□□ -2.11
CLDN3O15551 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
CLDN3O15551 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
CLDN3O15551 MT-CYB-201ENST00000361789 1141 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
CLDN3O15551 RNU6-105P-201ENST00000363909 104 ntBASIC1.87□□□□□ -2.11
CLDN3O15551 SNORD48-201ENST00000364953 64 ntBASIC1.87□□□□□ -2.11
CLDN3O15551 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.87□□□□□ -2.11
CLDN3O15551 SNORA8-201ENST00000384574 139 ntBASIC1.87□□□□□ -2.11
CLDN3O15551 RNU4-46P-201ENST00000410818 138 ntBASIC1.87□□□□□ -2.11
CLDN3O15551 RNU6-293P-201ENST00000411259 106 ntBASIC1.87□□□□□ -2.11
CLDN3O15551 AC013401.1-202ENST00000422017 626 ntTSL 2 BASIC1.87□□□□□ -2.11
CLDN3O15551 CBX3P6-201ENST00000430257 527 ntBASIC1.87□□□□□ -2.11
CLDN3O15551 LINC02195-201ENST00000443373 294 ntTSL 3 BASIC1.87□□□□□ -2.11
CLDN3O15551 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.87□□□□□ -2.11
CLDN3O15551 RNA5SP269-201ENST00000459032 137 ntBASIC1.87□□□□□ -2.11
CLDN3O15551 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC1.87□□□□□ -2.11
CLDN3O15551 AC093259.1-201ENST00000509755 300 ntBASIC1.87□□□□□ -2.11
CLDN3O15551 MTCO3P7-201ENST00000510008 774 ntBASIC1.87□□□□□ -2.11
CLDN3O15551 AC009646.1-201ENST00000510455 318 ntBASIC1.87□□□□□ -2.11
CLDN3O15551 RNU5F-2P-201ENST00000516066 82 ntBASIC1.87□□□□□ -2.11
CLDN3O15551 RNU6-991P-201ENST00000516168 107 ntBASIC1.87□□□□□ -2.11
CLDN3O15551 LRRC34P1-201ENST00000542742 915 ntBASIC1.87□□□□□ -2.11
CLDN3O15551 MIR3683-201ENST00000580847 82 ntBASIC1.87□□□□□ -2.11
CLDN3O15551 AC103987.3-201ENST00000582071 292 ntBASIC1.87□□□□□ -2.11
CLDN3O15551 AL590229.1-201ENST00000603497 542 ntBASIC1.87□□□□□ -2.11
CLDN3O15551 AL078605.1-201ENST00000603529 500 ntBASIC1.87□□□□□ -2.11
CLDN3O15551 AC025754.2-201ENST00000606491 432 ntBASIC1.87□□□□□ -2.11
CLDN3O15551 MIR1248-201ENST00000629190 106 ntBASIC1.87□□□□□ -2.11
CLDN3O15551 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC1.87□□□□□ -2.11
CLDN3O15551 CYLC2-202ENST00000487798 2053 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
CLDN3O15551 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.87□□□□□ -2.11
CLDN3O15551 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.87□□□□□ -2.11
CLDN3O15551 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC1.86□□□□□ -2.11
CLDN3O15551 RNA5SP212-201ENST00000391223 107 ntBASIC1.86□□□□□ -2.11
CLDN3O15551 AL669831.1-202ENST00000428504 417 ntBASIC1.86□□□□□ -2.11
CLDN3O15551 AL606534.3-201ENST00000437499 373 ntTSL 5 BASIC1.86□□□□□ -2.11
CLDN3O15551 GTF2IP13-201ENST00000438487 386 ntBASIC1.86□□□□□ -2.11
CLDN3O15551 AL445567.1-201ENST00000439121 144 ntBASIC1.86□□□□□ -2.11
CLDN3O15551 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.86□□□□□ -2.11
CLDN3O15551 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.86□□□□□ -2.11
CLDN3O15551 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC1.86□□□□□ -2.11
CLDN3O15551 KATNBL1P3-201ENST00000443475 909 ntBASIC1.86□□□□□ -2.11
CLDN3O15551 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC1.86□□□□□ -2.11
CLDN3O15551 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC1.86□□□□□ -2.11
CLDN3O15551 PPP1R2P5-201ENST00000457256 603 ntBASIC1.86□□□□□ -2.11
CLDN3O15551 LINC02077-201ENST00000465795 409 ntTSL 3 BASIC1.86□□□□□ -2.11
CLDN3O15551 SUB1-206ENST00000506237 908 ntAPPRIS P1 TSL 2 BASIC1.86□□□□□ -2.11
CLDN3O15551 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
CLDN3O15551 AC090023.1-201ENST00000545750 443 ntTSL 3 BASIC1.86□□□□□ -2.11
CLDN3O15551 AC104581.2-201ENST00000572227 430 ntBASIC1.86□□□□□ -2.11
CLDN3O15551 AC024614.2-201ENST00000577584 372 ntBASIC1.86□□□□□ -2.11
CLDN3O15551 BNIP3P25-201ENST00000596023 559 ntBASIC1.86□□□□□ -2.11
CLDN3O15551 CYP2C61P-201ENST00000604072 290 ntBASIC1.86□□□□□ -2.11
CLDN3O15551 AC012493.3-201ENST00000604494 112 ntBASIC1.86□□□□□ -2.11
CLDN3O15551 MIR502-201ENST00000606349 86 ntBASIC1.86□□□□□ -2.11
CLDN3O15551 AC104073.3-201ENST00000610942 955 ntBASIC1.86□□□□□ -2.11
CLDN3O15551 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
CLDN3O15551 RNU1-58P-201ENST00000362413 163 ntBASIC1.85□□□□□ -2.11
CLDN3O15551 RNU6-1164P-201ENST00000364428 107 ntBASIC1.85□□□□□ -2.11
CLDN3O15551 RNU4-48P-201ENST00000365559 182 ntBASIC1.85□□□□□ -2.11
CLDN3O15551 POLHP1-201ENST00000411806 470 ntBASIC1.85□□□□□ -2.11
CLDN3O15551 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.85□□□□□ -2.11
CLDN3O15551 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
CLDN3O15551 AC133104.1-201ENST00000429100 218 ntBASIC1.85□□□□□ -2.11
CLDN3O15551 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC1.85□□□□□ -2.11
CLDN3O15551 MTND1P18-201ENST00000448191 573 ntBASIC1.85□□□□□ -2.11
CLDN3O15551 AC022364.2-201ENST00000457963 554 ntBASIC1.85□□□□□ -2.11
CLDN3O15551 MTND3P5-201ENST00000512798 333 ntBASIC1.85□□□□□ -2.11
CLDN3O15551 AF117829.1-203ENST00000520306 421 ntTSL 5 BASIC1.85□□□□□ -2.11
CLDN3O15551 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.85□□□□□ -2.11
CLDN3O15551 AC023050.3-201ENST00000541142 333 ntBASIC1.85□□□□□ -2.11
CLDN3O15551 MIR4703-201ENST00000577728 79 ntBASIC1.85□□□□□ -2.11
CLDN3O15551 MIR4255-201ENST00000579351 72 ntBASIC1.85□□□□□ -2.11
CLDN3O15551 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC1.85□□□□□ -2.11
CLDN3O15551 AC107304.1-201ENST00000604229 296 ntBASIC1.85□□□□□ -2.11
CLDN3O15551 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.85□□□□□ -2.11
CLDN3O15551 AL359757.2-201ENST00000624309 274 ntBASIC1.85□□□□□ -2.11
CLDN3O15551 CD44-239ENST00000639002 528 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
CLDN3O15551 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.85□□□□□ -2.11
CLDN3O15551 MUC15-203ENST00000455601 3156 ntAPPRIS P1 TSL 2 BASIC1.85□□□□□ -2.11
CLDN3O15551 ATP8A2P2-201ENST00000437678 1568 ntBASIC1.85□□□□□ -2.11
CLDN3O15551 RNA5SP190-201ENST00000365222 118 ntBASIC1.84□□□□□ -2.11
CLDN3O15551 RNU6-282P-201ENST00000365357 103 ntBASIC1.84□□□□□ -2.11
CLDN3O15551 RNU6-393P-201ENST00000384475 107 ntBASIC1.84□□□□□ -2.11
CLDN3O15551 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.84□□□□□ -2.11
CLDN3O15551 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC1.84□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 98.7 ms