Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 RNU6-445P-201ENST00000516949 107 ntBASIC1.36□□□□□ -2.19
SMKR1H3BMG3 SNORA25.17-201ENST00000517184 124 ntBASIC1.36□□□□□ -2.19
SMKR1H3BMG3 SNORA70.24-201ENST00000517233 118 ntBASIC1.36□□□□□ -2.19
SMKR1H3BMG3 LYRM2-203ENST00000520318 677 ntTSL 2 BASIC1.36□□□□□ -2.19
SMKR1H3BMG3 CDKL3-207ENST00000521755 586 ntTSL 5 BASIC1.36□□□□□ -2.19
SMKR1H3BMG3 AP002770.2-201ENST00000543613 532 ntBASIC1.36□□□□□ -2.19
SMKR1H3BMG3 HSPE1P4-201ENST00000550617 308 ntBASIC1.36□□□□□ -2.19
SMKR1H3BMG3 SNRPGP18-201ENST00000553000 214 ntBASIC1.36□□□□□ -2.19
SMKR1H3BMG3 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC1.36□□□□□ -2.19
SMKR1H3BMG3 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC1.36□□□□□ -2.19
SMKR1H3BMG3 SUB1P4-201ENST00000566062 339 ntBASIC1.36□□□□□ -2.19
SMKR1H3BMG3 AC012414.6-201ENST00000568241 401 ntBASIC1.36□□□□□ -2.19
SMKR1H3BMG3 MIR4419B-201ENST00000577260 68 ntBASIC1.36□□□□□ -2.19
SMKR1H3BMG3 AC024614.2-201ENST00000577584 372 ntBASIC1.36□□□□□ -2.19
SMKR1H3BMG3 ZNF667-AS1-209ENST00000601875 495 ntTSL 3 BASIC1.36□□□□□ -2.19
SMKR1H3BMG3 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC1.36□□□□□ -2.19
SMKR1H3BMG3 AC009161.2-201ENST00000624626 138 ntBASIC1.36□□□□□ -2.19
SMKR1H3BMG3 FANCD2-213ENST00000625535 117 ntTSL 5 BASIC1.36□□□□□ -2.19
SMKR1H3BMG3 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
SMKR1H3BMG3 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.35□□□□□ -2.19
SMKR1H3BMG3 RNU6-661P-201ENST00000362409 107 ntBASIC1.35□□□□□ -2.19
SMKR1H3BMG3 SNORA80A-201ENST00000363922 136 ntBASIC1.35□□□□□ -2.19
SMKR1H3BMG3 RNU4-42P-201ENST00000364738 142 ntBASIC1.35□□□□□ -2.19
SMKR1H3BMG3 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
SMKR1H3BMG3 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC1.35□□□□□ -2.19
SMKR1H3BMG3 RN7SKP32-201ENST00000410167 303 ntBASIC1.35□□□□□ -2.19
SMKR1H3BMG3 MTND2P9-201ENST00000422293 931 ntBASIC1.35□□□□□ -2.19
SMKR1H3BMG3 AL356361.2-201ENST00000430542 443 ntTSL 3 BASIC1.35□□□□□ -2.19
SMKR1H3BMG3 SNAP23P1-201ENST00000433229 246 ntBASIC1.35□□□□□ -2.19
SMKR1H3BMG3 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC1.35□□□□□ -2.19
SMKR1H3BMG3 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC1.35□□□□□ -2.19
SMKR1H3BMG3 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC1.35□□□□□ -2.19
SMKR1H3BMG3 SCARNA18-201ENST00000459004 134 ntBASIC1.35□□□□□ -2.19
SMKR1H3BMG3 AC022272.1-201ENST00000503478 777 ntTSL 2 BASIC1.35□□□□□ -2.19
SMKR1H3BMG3 FAM206BP-201ENST00000510179 541 ntBASIC1.35□□□□□ -2.19
SMKR1H3BMG3 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.35□□□□□ -2.19
SMKR1H3BMG3 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC1.35□□□□□ -2.19
SMKR1H3BMG3 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC1.35□□□□□ -2.19
SMKR1H3BMG3 MTCO3P23-201ENST00000561363 289 ntBASIC1.35□□□□□ -2.19
SMKR1H3BMG3 AC109446.1-201ENST00000566172 220 ntBASIC1.35□□□□□ -2.19
SMKR1H3BMG3 MTATP6P24-201ENST00000576835 677 ntBASIC1.35□□□□□ -2.19
SMKR1H3BMG3 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.35□□□□□ -2.19
SMKR1H3BMG3 MIR3923-201ENST00000579521 83 ntBASIC1.35□□□□□ -2.19
SMKR1H3BMG3 LARP7P3-201ENST00000579888 337 ntBASIC1.35□□□□□ -2.19
SMKR1H3BMG3 MIR3941-201ENST00000582572 103 ntBASIC1.35□□□□□ -2.19
SMKR1H3BMG3 RSL24D1P11-201ENST00000591045 491 ntBASIC1.35□□□□□ -2.19
SMKR1H3BMG3 AC016925.2-201ENST00000605108 242 ntBASIC1.35□□□□□ -2.19
SMKR1H3BMG3 AC002044.1-201ENST00000606707 158 ntBASIC1.35□□□□□ -2.19
SMKR1H3BMG3 SCOC-AS1-203ENST00000609616 405 ntTSL 3 BASIC1.35□□□□□ -2.19
SMKR1H3BMG3 AC135507.2-201ENST00000612443 309 ntBASIC1.35□□□□□ -2.19
SMKR1H3BMG3 5S_rRNA.11-201ENST00000618635 84 ntBASIC1.35□□□□□ -2.19
SMKR1H3BMG3 AC091304.6-201ENST00000619761 202 ntBASIC1.35□□□□□ -2.19
SMKR1H3BMG3 PARPBP-201ENST00000327680 3014 ntAPPRIS P1 TSL 2 BASIC1.34□□□□□ -2.19
SMKR1H3BMG3 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
SMKR1H3BMG3 KTN1-204ENST00000395311 4516 ntAPPRIS ALT2 TSL 1 (best) BASIC1.34□□□□□ -2.19
SMKR1H3BMG3 AC092268.1-201ENST00000342691 405 ntBASIC1.34□□□□□ -2.19
SMKR1H3BMG3 MIR126-201ENST00000362291 85 ntBASIC1.34□□□□□ -2.19
SMKR1H3BMG3 SNORA5B-201ENST00000363786 132 ntBASIC1.34□□□□□ -2.19
SMKR1H3BMG3 MIR23B-201ENST00000384832 97 ntBASIC1.34□□□□□ -2.19
SMKR1H3BMG3 RNU2-29P-201ENST00000410423 189 ntBASIC1.34□□□□□ -2.19
SMKR1H3BMG3 MTCO3P41-201ENST00000414801 328 ntBASIC1.34□□□□□ -2.19
SMKR1H3BMG3 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC1.34□□□□□ -2.19
SMKR1H3BMG3 AL133396.1-201ENST00000432048 687 ntBASIC1.34□□□□□ -2.19
SMKR1H3BMG3 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.34□□□□□ -2.19
SMKR1H3BMG3 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC1.34□□□□□ -2.19
SMKR1H3BMG3 AL031274.1-201ENST00000450334 232 ntBASIC1.34□□□□□ -2.19
SMKR1H3BMG3 AC130509.1-201ENST00000464158 433 ntBASIC1.34□□□□□ -2.19
SMKR1H3BMG3 AC010409.1-201ENST00000487382 476 ntBASIC1.34□□□□□ -2.19
SMKR1H3BMG3 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC1.34□□□□□ -2.19
SMKR1H3BMG3 YWHAEP4-201ENST00000505390 198 ntBASIC1.34□□□□□ -2.19
SMKR1H3BMG3 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.34□□□□□ -2.19
SMKR1H3BMG3 AP002963.1-201ENST00000530590 184 ntBASIC1.34□□□□□ -2.19
SMKR1H3BMG3 AC022880.1-201ENST00000534017 973 ntBASIC1.34□□□□□ -2.19
SMKR1H3BMG3 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC1.34□□□□□ -2.19
SMKR1H3BMG3 AC026790.2-201ENST00000606282 430 ntBASIC1.34□□□□□ -2.19
SMKR1H3BMG3 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.34□□□□□ -2.19
SMKR1H3BMG3 AC091931.1-201ENST00000623488 728 ntBASIC1.34□□□□□ -2.19
SMKR1H3BMG3 AP003485.2-201ENST00000623636 610 ntBASIC1.34□□□□□ -2.19
SMKR1H3BMG3 AC243829.7-201ENST00000633081 225 ntBASIC1.34□□□□□ -2.19
SMKR1H3BMG3 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC1.34□□□□□ -2.2
SMKR1H3BMG3 MIR424-201ENST00000362227 98 ntBASIC1.33□□□□□ -2.2
SMKR1H3BMG3 Y_RNA.201-201ENST00000364052 96 ntBASIC1.33□□□□□ -2.2
SMKR1H3BMG3 SNORA64-201ENST00000384674 134 ntBASIC1.33□□□□□ -2.2
SMKR1H3BMG3 SNORA26.3-201ENST00000391119 136 ntBASIC1.33□□□□□ -2.2
SMKR1H3BMG3 AC019129.1-201ENST00000403786 261 ntBASIC1.33□□□□□ -2.2
SMKR1H3BMG3 RNA5SP201-201ENST00000410316 124 ntBASIC1.33□□□□□ -2.2
SMKR1H3BMG3 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC1.33□□□□□ -2.2
SMKR1H3BMG3 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC1.33□□□□□ -2.2
SMKR1H3BMG3 RPL23AP95-201ENST00000426806 265 ntBASIC1.33□□□□□ -2.2
SMKR1H3BMG3 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC1.33□□□□□ -2.2
SMKR1H3BMG3 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC1.33□□□□□ -2.2
SMKR1H3BMG3 OFD1P4Y-201ENST00000455273 1179 ntBASIC1.33□□□□□ -2.2
SMKR1H3BMG3 AL049873.1-201ENST00000480540 376 ntBASIC1.33□□□□□ -2.2
SMKR1H3BMG3 AC016632.1-201ENST00000503994 196 ntBASIC1.33□□□□□ -2.2
SMKR1H3BMG3 AK3P2-201ENST00000507976 429 ntBASIC1.33□□□□□ -2.2
SMKR1H3BMG3 AC105417.1-201ENST00000514691 285 ntBASIC1.33□□□□□ -2.2
SMKR1H3BMG3 SNORA31.17-201ENST00000516953 127 ntBASIC1.33□□□□□ -2.2
SMKR1H3BMG3 AC091996.1-201ENST00000522274 600 ntTSL 3 BASIC1.33□□□□□ -2.2
SMKR1H3BMG3 EIF4BP1-201ENST00000554881 351 ntBASIC1.33□□□□□ -2.2
SMKR1H3BMG3 AC103996.1-201ENST00000555468 102 ntBASIC1.33□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 94.3 ms