Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 B3GNTL1P2-201ENST00000603673 288 ntBASIC3.81□□□□□ -1.8
CCDC85CA6NKD9 uc_338.14-201ENST00000613162 166 ntBASIC3.81□□□□□ -1.8
CCDC85CA6NKD9 AC138305.3-201ENST00000624988 240 ntBASIC3.81□□□□□ -1.8
CCDC85CA6NKD9 MPP6-209ENST00000625307 126 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC85CA6NKD9 AL773545.4-201ENST00000637262 310 ntBASIC3.81□□□□□ -1.8
CCDC85CA6NKD9 AL513478.4-201ENST00000641636 310 ntBASIC3.81□□□□□ -1.8
CCDC85CA6NKD9 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.81□□□□□ -1.8
CCDC85CA6NKD9 MGA-201ENST00000219905 12042 ntAPPRIS P4 TSL 5 BASIC3.81□□□□□ -1.8
CCDC85CA6NKD9 PHF6-205ENST00000625464 4434 ntAPPRIS ALT1 TSL 5 BASIC3.81□□□□□ -1.8
CCDC85CA6NKD9 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC85CA6NKD9 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC3.81□□□□□ -1.8
CCDC85CA6NKD9 ANP32E-209ENST00000616917 2989 ntTSL 2 BASIC3.81□□□□□ -1.8
CCDC85CA6NKD9 AC233981.2-201ENST00000611524 1614 ntBASIC3.81□□□□□ -1.8
CCDC85CA6NKD9 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 AC093010.3-201ENST00000570269 15214 ntBASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 MBD5-202ENST00000407073 9512 ntTSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 AC092268.1-201ENST00000342691 405 ntBASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 RNU5B-2P-201ENST00000363036 113 ntBASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 RNU4-42P-201ENST00000364738 142 ntBASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 RNU6-142P-201ENST00000384019 107 ntBASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 MIR625-201ENST00000385047 85 ntBASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 MIR767-201ENST00000390228 109 ntBASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 SNORA12.2-201ENST00000391040 156 ntBASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 EEF1A1P41-201ENST00000414667 207 ntBASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 AC007098.1-201ENST00000420122 367 ntBASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 OSTCP8-201ENST00000445117 448 ntBASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 AC112492.4-201ENST00000456549 352 ntBASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 AC104564.1-201ENST00000493028 407 ntBASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 AC025445.1-201ENST00000502728 300 ntBASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 AC105758.1-201ENST00000506038 399 ntBASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 IGLV3-26-201ENST00000520756 302 ntBASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 AC115990.1-201ENST00000526957 301 ntBASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 AC100770.1-201ENST00000532310 322 ntBASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 AC096772.1-201ENST00000609146 564 ntBASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 5S_rRNA.16-201ENST00000612928 119 ntBASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 MIR4272-201ENST00000635924 64 ntBASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 AL450472.1-202ENST00000637286 180 ntBASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 SLC30A6-202ENST00000357055 4758 ntTSL 2 BASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 SYTL2-230ENST00000634661 6672 ntTSL 5 BASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 FAM169A-201ENST00000389156 5990 ntAPPRIS P1 TSL 1 (best) BASIC3.8□□□□□ -1.8
CCDC85CA6NKD9 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 Y_RNA.39-201ENST00000362620 98 ntBASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 MIR147B-201ENST00000390185 80 ntBASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 RNU6-482P-201ENST00000391068 107 ntBASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 RNA5SP494-201ENST00000410653 129 ntBASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 RPL21P40-201ENST00000428586 483 ntBASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 RPL39P29-201ENST00000447779 157 ntBASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 RPL23AP75-201ENST00000491601 451 ntBASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 GZMAP1-201ENST00000503054 631 ntBASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 AC108210.2-201ENST00000503681 201 ntBASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 RNU6-911P-201ENST00000516523 104 ntBASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 IGHVII-53-1-201ENST00000519538 255 ntBASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 MRPS36P4-201ENST00000534436 298 ntBASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 AC008739.1-201ENST00000598137 575 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 SNORD58B-201ENST00000607313 66 ntBASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 C9orf153-205ENST00000617985 333 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 AL590808.1-201ENST00000618696 141 ntBASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 AC007792.1-201ENST00000623023 402 ntBASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 AC110079.1-202ENST00000635213 138 ntBASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 CFAP44-202ENST00000393845 7069 ntAPPRIS ALT2 TSL 5 BASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 AC103988.1-201ENST00000566382 2177 ntBASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 UBA6-201ENST00000322244 9564 ntAPPRIS P1 TSL 1 (best) BASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 OR6C1-202ENST00000642104 2055 ntAPPRIS P1 BASIC3.79□□□□□ -1.8
CCDC85CA6NKD9 SYNE2-204ENST00000358025 21842 ntAPPRIS P3 TSL 5 BASIC3.78□□□□□ -1.8
CCDC85CA6NKD9 AL591441.1-201ENST00000618108 2247 ntTSL 2 BASIC3.78□□□□□ -1.8
CCDC85CA6NKD9 AC005592.1-201ENST00000566527 1640 ntBASIC3.78□□□□□ -1.8
CCDC85CA6NKD9 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC85CA6NKD9 PRRG1-202ENST00000449135 4481 ntAPPRIS P1 TSL 1 (best) BASIC3.78□□□□□ -1.8
CCDC85CA6NKD9 OR8K3-203ENST00000641662 2438 ntAPPRIS P1 BASIC3.78□□□□□ -1.8
CCDC85CA6NKD9 U8.2-201ENST00000363156 134 ntBASIC3.78□□□□□ -1.8
CCDC85CA6NKD9 RNA5SP139-201ENST00000364340 117 ntBASIC3.78□□□□□ -1.8
CCDC85CA6NKD9 Y_RNA.314-201ENST00000365114 102 ntBASIC3.78□□□□□ -1.8
CCDC85CA6NKD9 Y_RNA.466-201ENST00000384294 113 ntBASIC3.78□□□□□ -1.8
CCDC85CA6NKD9 MTHFD2P2-201ENST00000407725 247 ntBASIC3.78□□□□□ -1.8
CCDC85CA6NKD9 RNU6-985P-201ENST00000410182 104 ntBASIC3.78□□□□□ -1.8
CCDC85CA6NKD9 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.78□□□□□ -1.8
CCDC85CA6NKD9 AL109933.2-201ENST00000452651 260 ntBASIC3.78□□□□□ -1.8
CCDC85CA6NKD9 RPS4XP22-201ENST00000480755 780 ntBASIC3.78□□□□□ -1.8
CCDC85CA6NKD9 RPL30P1-201ENST00000488676 339 ntBASIC3.78□□□□□ -1.8
CCDC85CA6NKD9 AF186996.7-201ENST00000492781 209 ntBASIC3.78□□□□□ -1.8
CCDC85CA6NKD9 RN7SKP132-201ENST00000516001 208 ntBASIC3.78□□□□□ -1.8
CCDC85CA6NKD9 RNU6-991P-201ENST00000516168 107 ntBASIC3.78□□□□□ -1.8
CCDC85CA6NKD9 SNORA40.14-201ENST00000516543 86 ntBASIC3.78□□□□□ -1.8
CCDC85CA6NKD9 RNU6-1137P-201ENST00000517073 99 ntBASIC3.78□□□□□ -1.8
CCDC85CA6NKD9 AC144568.1-201ENST00000520139 137 ntBASIC3.78□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 118.5 ms