Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 AC090617.7-201ENST00000623952 126 ntBASIC3.42□□□□□ -1.86
LIMCH1Q9UPQ0 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 RNU6-490P-201ENST00000362985 107 ntBASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 RNU1-105P-201ENST00000363470 161 ntBASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 SNORD46.1-201ENST00000364139 104 ntBASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 SNORA9.2-201ENST00000365361 133 ntBASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 RNU6-843P-201ENST00000384454 104 ntBASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 MIR181A2-201ENST00000384863 110 ntBASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 snosnR66.1-201ENST00000391095 99 ntBASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 SAR1AP2-201ENST00000392696 594 ntBASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 BTF3L4P2-201ENST00000392798 346 ntBASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 AC003092.1-201ENST00000415536 639 ntTSL 3 BASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 U91324.1-201ENST00000442864 447 ntTSL 5 BASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 AL441985.1-201ENST00000457727 251 ntBASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 RPL27AP5-201ENST00000469428 449 ntBASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 NDUFA6-201ENST00000470753 475 ntTSL 2 BASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 AC097462.2-201ENST00000504623 481 ntBASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 RNU5F-8P-201ENST00000515941 111 ntBASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 SCARNA16.2-201ENST00000516520 172 ntBASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 AC105999.1-201ENST00000518722 473 ntTSL 3 BASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 MTCO3P13-201ENST00000577757 781 ntBASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 SNRPGP17-201ENST00000603780 214 ntBASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 SMIM2-AS1-204ENST00000619472 746 ntTSL 3 BASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 LTN1-201ENST00000361371 7685 ntAPPRIS P1 TSL 1 (best) BASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 C6orf10-202ENST00000375015 2173 ntAPPRIS ALT2 TSL 5 BASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 AC008669.1-201ENST00000565823 2178 ntBASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC3.41□□□□□ -1.86
LIMCH1Q9UPQ0 RICTOR-201ENST00000296782 7505 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
LIMCH1Q9UPQ0 GCNT4-201ENST00000322348 5554 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
LIMCH1Q9UPQ0 Y_RNA.202-201ENST00000364083 110 ntBASIC3.4□□□□□ -1.87
LIMCH1Q9UPQ0 Y_RNA.326-201ENST00000365176 113 ntBASIC3.4□□□□□ -1.87
LIMCH1Q9UPQ0 RNU6-487P-201ENST00000365430 104 ntBASIC3.4□□□□□ -1.87
LIMCH1Q9UPQ0 RNU6-474P-201ENST00000384243 107 ntBASIC3.4□□□□□ -1.87
LIMCH1Q9UPQ0 RNU6-19P-201ENST00000384718 107 ntBASIC3.4□□□□□ -1.87
LIMCH1Q9UPQ0 RNU6-331P-201ENST00000384724 107 ntBASIC3.4□□□□□ -1.87
LIMCH1Q9UPQ0 MIR512-1-201ENST00000384913 84 ntBASIC3.4□□□□□ -1.87
LIMCH1Q9UPQ0 AL590004.2-201ENST00000404787 371 ntBASIC3.4□□□□□ -1.87
LIMCH1Q9UPQ0 AL365496.1-201ENST00000426885 215 ntBASIC3.4□□□□□ -1.87
LIMCH1Q9UPQ0 RPL21P40-201ENST00000428586 483 ntBASIC3.4□□□□□ -1.87
LIMCH1Q9UPQ0 AL445488.1-202ENST00000430623 545 ntTSL 3 BASIC3.4□□□□□ -1.87
LIMCH1Q9UPQ0 LINC01683-201ENST00000443479 412 ntTSL 3 BASIC3.4□□□□□ -1.87
LIMCH1Q9UPQ0 AL118496.2-201ENST00000448300 230 ntBASIC3.4□□□□□ -1.87
LIMCH1Q9UPQ0 RPS29P27-201ENST00000463711 170 ntBASIC3.4□□□□□ -1.87
LIMCH1Q9UPQ0 AC093523.1-201ENST00000503268 499 ntTSL 3 BASIC3.4□□□□□ -1.87
LIMCH1Q9UPQ0 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC3.4□□□□□ -1.87
LIMCH1Q9UPQ0 RNA5SP384-201ENST00000516615 116 ntBASIC3.4□□□□□ -1.87
LIMCH1Q9UPQ0 AC009812.2-201ENST00000517657 457 ntBASIC3.4□□□□□ -1.87
LIMCH1Q9UPQ0 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC3.4□□□□□ -1.87
LIMCH1Q9UPQ0 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.4□□□□□ -1.87
LIMCH1Q9UPQ0 MIR3171-201ENST00000584270 74 ntBASIC3.4□□□□□ -1.87
LIMCH1Q9UPQ0 AP001836.1-201ENST00000604675 523 ntBASIC3.4□□□□□ -1.87
LIMCH1Q9UPQ0 AC019159.1-201ENST00000605094 187 ntBASIC3.4□□□□□ -1.87
LIMCH1Q9UPQ0 uc_338.22-201ENST00000622722 187 ntBASIC3.4□□□□□ -1.87
LIMCH1Q9UPQ0 FOXP2-211ENST00000408937 6443 ntTSL 1 (best) BASIC3.4□□□□□ -1.87
LIMCH1Q9UPQ0 AP003122.5-201ENST00000527668 3766 ntBASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 MAPK10-322ENST00000641485 4530 ntBASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 RNU6-748P-201ENST00000384648 107 ntBASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 MIR34B-201ENST00000385076 84 ntBASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 RNU6-750P-201ENST00000390946 107 ntBASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 RNA5SP390-201ENST00000410191 113 ntBASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 PTGES3P4-201ENST00000426243 356 ntBASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 MTND3P9-201ENST00000429526 346 ntBASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 AC018495.1-201ENST00000440266 452 ntTSL 3 BASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 AL137792.2-201ENST00000443484 235 ntBASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 AC107626.1-201ENST00000471084 183 ntBASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 AC068781.1-201ENST00000488231 618 ntBASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 LINC02110-201ENST00000503870 546 ntTSL 3 BASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 AC023442.1-201ENST00000531247 422 ntBASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 AP003072.1-201ENST00000531740 145 ntBASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 LINC02309-201ENST00000553679 207 ntTSL 3 BASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 MIR4506-201ENST00000584693 77 ntBASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 AC091152.3-201ENST00000604227 325 ntBASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 DLEU1_1.1-201ENST00000618107 190 ntBASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
LIMCH1Q9UPQ0 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 MTND5P9-201ENST00000503854 1755 ntBASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 AC103988.1-201ENST00000566382 2177 ntBASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 RNU6-1115P-201ENST00000362490 106 ntBASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 SNORD56.1-201ENST00000362913 68 ntBASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 SNORA38.1-201ENST00000364172 131 ntBASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 Y_RNA.422-201ENST00000384054 114 ntBASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 RNU6-784P-201ENST00000384330 106 ntBASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 SNORD88.1-201ENST00000408684 91 ntBASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 RN7SKP123-201ENST00000410732 291 ntBASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 AL355388.1-201ENST00000415726 401 ntTSL 2 BASIC3.38□□□□□ -1.87
LIMCH1Q9UPQ0 BX276092.3-201ENST00000424182 230 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 113.9 ms