Protein–RNA interactions for Protein: Q9UBQ0

VPS29, Vacuolar protein sorting-associated protein 29, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29Q9UBQ0 TBC1D31-206ENST00000518805 2201 ntTSL 2 BASIC0.81□□□□□ -2.28
VPS29Q9UBQ0 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
VPS29Q9UBQ0 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC0.81□□□□□ -2.28
VPS29Q9UBQ0 RNU1-124P-201ENST00000363861 145 ntBASIC0.81□□□□□ -2.28
VPS29Q9UBQ0 SNORD114-2-201ENST00000363953 78 ntBASIC0.81□□□□□ -2.28
VPS29Q9UBQ0 RNU6-968P-201ENST00000384076 107 ntBASIC0.81□□□□□ -2.28
VPS29Q9UBQ0 RPS3AP36-201ENST00000398190 775 ntBASIC0.81□□□□□ -2.28
VPS29Q9UBQ0 RPL39P28-201ENST00000465655 155 ntBASIC0.81□□□□□ -2.28
VPS29Q9UBQ0 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC0.81□□□□□ -2.28
VPS29Q9UBQ0 AC005840.1-201ENST00000498412 377 ntBASIC0.81□□□□□ -2.28
VPS29Q9UBQ0 AC112206.3-201ENST00000514578 389 ntBASIC0.81□□□□□ -2.28
VPS29Q9UBQ0 RNU6-351P-201ENST00000516097 100 ntBASIC0.81□□□□□ -2.28
VPS29Q9UBQ0 RNU5A-4P-201ENST00000516588 111 ntBASIC0.81□□□□□ -2.28
VPS29Q9UBQ0 SNORD60.2-201ENST00000516883 86 ntBASIC0.81□□□□□ -2.28
VPS29Q9UBQ0 CBX3P8-201ENST00000532412 525 ntBASIC0.81□□□□□ -2.28
VPS29Q9UBQ0 AC136932.1-201ENST00000574771 208 ntBASIC0.81□□□□□ -2.28
VPS29Q9UBQ0 KC877982.1-201ENST00000602313 470 ntBASIC0.81□□□□□ -2.28
VPS29Q9UBQ0 AL353778.1-201ENST00000603149 408 ntBASIC0.81□□□□□ -2.28
VPS29Q9UBQ0 MZT1P2-201ENST00000604387 248 ntBASIC0.81□□□□□ -2.28
VPS29Q9UBQ0 FAM71BP1-201ENST00000604431 523 ntBASIC0.81□□□□□ -2.28
VPS29Q9UBQ0 BX284668.6-201ENST00000606899 438 ntBASIC0.81□□□□□ -2.28
VPS29Q9UBQ0 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.81□□□□□ -2.28
VPS29Q9UBQ0 ZFAT-AS1_2.1-201ENST00000613742 201 ntBASIC0.81□□□□□ -2.28
VPS29Q9UBQ0 AC027335.2-201ENST00000624030 375 ntBASIC0.81□□□□□ -2.28
VPS29Q9UBQ0 PTPN22-206ENST00000525799 2118 ntTSL 1 (best) BASIC0.8□□□□□ -2.28
VPS29Q9UBQ0 SNORD32B-201ENST00000364460 84 ntBASIC0.8□□□□□ -2.28
VPS29Q9UBQ0 SPHAR-201ENST00000366688 648 ntAPPRIS P1 BASIC0.8□□□□□ -2.28
VPS29Q9UBQ0 RNU6-946P-201ENST00000383878 107 ntBASIC0.8□□□□□ -2.28
VPS29Q9UBQ0 AC123900.1-201ENST00000420390 96 ntBASIC0.8□□□□□ -2.28
VPS29Q9UBQ0 SNX2P2-201ENST00000424553 323 ntBASIC0.8□□□□□ -2.28
VPS29Q9UBQ0 AP001136.1-201ENST00000425058 635 ntTSL 2 BASIC0.8□□□□□ -2.28
VPS29Q9UBQ0 TXNL1P1-201ENST00000429528 554 ntBASIC0.8□□□□□ -2.28
VPS29Q9UBQ0 PCDH9-AS3-201ENST00000434073 479 ntTSL 2 BASIC0.8□□□□□ -2.28
VPS29Q9UBQ0 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC0.8□□□□□ -2.28
VPS29Q9UBQ0 AL122001.1-201ENST00000457027 370 ntBASIC0.8□□□□□ -2.28
VPS29Q9UBQ0 PTPRG-AS1-202ENST00000466893 823 ntTSL 4 BASIC0.8□□□□□ -2.28
VPS29Q9UBQ0 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC0.8□□□□□ -2.28
VPS29Q9UBQ0 AC108078.2-201ENST00000510750 236 ntBASIC0.8□□□□□ -2.28
VPS29Q9UBQ0 AC108729.3-201ENST00000513484 108 ntBASIC0.8□□□□□ -2.28
VPS29Q9UBQ0 SNORD116-28-201ENST00000516123 91 ntBASIC0.8□□□□□ -2.28
VPS29Q9UBQ0 RNA5SP481-201ENST00000516814 122 ntBASIC0.8□□□□□ -2.28
VPS29Q9UBQ0 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC0.8□□□□□ -2.28
VPS29Q9UBQ0 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC0.8□□□□□ -2.28
VPS29Q9UBQ0 AC092142.2-201ENST00000614642 354 ntTSL 3 BASIC0.8□□□□□ -2.28
VPS29Q9UBQ0 AC007527.2-201ENST00000621825 546 ntTSL 5 BASIC0.8□□□□□ -2.28
VPS29Q9UBQ0 AC010615.1-201ENST00000594254 1764 ntBASIC0.79□□□□□ -2.28
VPS29Q9UBQ0 RNY3P13-201ENST00000365542 102 ntBASIC0.79□□□□□ -2.28
VPS29Q9UBQ0 SNORA25-201ENST00000384384 134 ntBASIC0.79□□□□□ -2.28
VPS29Q9UBQ0 MIR222-201ENST00000384992 110 ntBASIC0.79□□□□□ -2.28
VPS29Q9UBQ0 AP000275.1-201ENST00000411943 390 ntBASIC0.79□□□□□ -2.28
VPS29Q9UBQ0 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC0.79□□□□□ -2.28
VPS29Q9UBQ0 AC245047.4-201ENST00000433189 144 ntBASIC0.79□□□□□ -2.28
VPS29Q9UBQ0 AL603825.1-201ENST00000438481 80 ntBASIC0.79□□□□□ -2.28
VPS29Q9UBQ0 MTND1P30-201ENST00000441241 901 ntBASIC0.79□□□□□ -2.28
VPS29Q9UBQ0 PRPS1P1-201ENST00000445305 876 ntBASIC0.79□□□□□ -2.28
VPS29Q9UBQ0 Z73417.1-201ENST00000447373 778 ntBASIC0.79□□□□□ -2.28
VPS29Q9UBQ0 TOMM22P6-201ENST00000465035 409 ntBASIC0.79□□□□□ -2.28
VPS29Q9UBQ0 Y_RNA.689-201ENST00000516589 107 ntBASIC0.79□□□□□ -2.28
VPS29Q9UBQ0 RN7SKP88-201ENST00000516847 250 ntBASIC0.79□□□□□ -2.28
VPS29Q9UBQ0 ZFAND1-217ENST00000521895 885 ntTSL 3 BASIC0.79□□□□□ -2.28
VPS29Q9UBQ0 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC0.79□□□□□ -2.28
VPS29Q9UBQ0 BNIP3P6-201ENST00000549284 499 ntBASIC0.79□□□□□ -2.28
VPS29Q9UBQ0 LINC02305-201ENST00000554142 476 ntTSL 3 BASIC0.79□□□□□ -2.28
VPS29Q9UBQ0 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC0.79□□□□□ -2.28
VPS29Q9UBQ0 7SK.8-201ENST00000612110 250 ntBASIC0.79□□□□□ -2.28
VPS29Q9UBQ0 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.79□□□□□ -2.28
VPS29Q9UBQ0 7SK.11-201ENST00000615477 250 ntBASIC0.79□□□□□ -2.28
VPS29Q9UBQ0 7SK.13-201ENST00000622040 250 ntBASIC0.79□□□□□ -2.28
VPS29Q9UBQ0 AL133216.2-202ENST00000634512 349 ntBASIC0.79□□□□□ -2.28
VPS29Q9UBQ0 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC0.79□□□□□ -2.28
VPS29Q9UBQ0 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.79□□□□□ -2.28
VPS29Q9UBQ0 RNU6-511P-201ENST00000363496 107 ntBASIC0.78□□□□□ -2.28
VPS29Q9UBQ0 RNU5E-6P-201ENST00000365574 115 ntBASIC0.78□□□□□ -2.28
VPS29Q9UBQ0 RNU6-769P-201ENST00000384407 104 ntBASIC0.78□□□□□ -2.28
VPS29Q9UBQ0 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.78□□□□□ -2.28
VPS29Q9UBQ0 RAP1BP3-201ENST00000407180 549 ntBASIC0.78□□□□□ -2.28
VPS29Q9UBQ0 RN7SKP61-201ENST00000410642 295 ntBASIC0.78□□□□□ -2.28
VPS29Q9UBQ0 RNU2-62P-201ENST00000410868 191 ntBASIC0.78□□□□□ -2.28
VPS29Q9UBQ0 RNU6-321P-201ENST00000410912 106 ntBASIC0.78□□□□□ -2.28
VPS29Q9UBQ0 EIF1AX-AS1-201ENST00000424026 378 ntTSL 5 BASIC0.78□□□□□ -2.28
VPS29Q9UBQ0 HSPE1P13-201ENST00000451143 297 ntBASIC0.78□□□□□ -2.28
VPS29Q9UBQ0 snoU13.30-201ENST00000458951 104 ntBASIC0.78□□□□□ -2.28
VPS29Q9UBQ0 RNU5F-2P-201ENST00000516066 82 ntBASIC0.78□□□□□ -2.28
VPS29Q9UBQ0 RNU6-113P-201ENST00000516653 101 ntBASIC0.78□□□□□ -2.28
VPS29Q9UBQ0 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC0.78□□□□□ -2.28
VPS29Q9UBQ0 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC0.78□□□□□ -2.28
VPS29Q9UBQ0 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC0.78□□□□□ -2.28
VPS29Q9UBQ0 MIR4698-201ENST00000577795 80 ntBASIC0.78□□□□□ -2.28
VPS29Q9UBQ0 MIR3973-201ENST00000579824 107 ntBASIC0.78□□□□□ -2.28
VPS29Q9UBQ0 VN1R107P-201ENST00000601784 209 ntBASIC0.78□□□□□ -2.28
VPS29Q9UBQ0 AC013244.2-201ENST00000603396 103 ntBASIC0.78□□□□□ -2.28
VPS29Q9UBQ0 AL391646.1-201ENST00000603860 190 ntBASIC0.78□□□□□ -2.28
VPS29Q9UBQ0 AL365434.2-201ENST00000607979 234 ntBASIC0.78□□□□□ -2.28
VPS29Q9UBQ0 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC0.78□□□□□ -2.28
VPS29Q9UBQ0 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.78□□□□□ -2.28
VPS29Q9UBQ0 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC0.78□□□□□ -2.29
VPS29Q9UBQ0 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC0.77□□□□□ -2.29
VPS29Q9UBQ0 MIR340-201ENST00000362125 95 ntBASIC0.77□□□□□ -2.29
VPS29Q9UBQ0 SNORD114-27-201ENST00000363766 70 ntBASIC0.77□□□□□ -2.29
VPS29Q9UBQ0 SNORA12-201ENST00000391162 147 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 113.7 ms