Protein–RNA interactions for Protein: Q9H400

LIME1, Lck-interacting transmembrane adapter 1, humanhuman

Predictions only

Length 295 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1Q9H400 RNU6-15P-201ENST00000384534 107 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 RNU6-2-201ENST00000384627 107 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 RNU6-29P-201ENST00000384637 107 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 Y_RNA.573-201ENST00000384763 105 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 RNU6-9-201ENST00000384776 107 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 RNU6-33P-201ENST00000384793 107 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 RNA5SP181-201ENST00000410246 98 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 RNA5SP118-201ENST00000410385 109 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.15□□□□□ -2.07
LIME1Q9H400 RPS3AP44-201ENST00000425466 790 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 MRPS10P2-201ENST00000431226 381 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC2.15□□□□□ -2.07
LIME1Q9H400 RNU7-66P-201ENST00000459469 62 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC2.15□□□□□ -2.07
LIME1Q9H400 RPL23AP70-201ENST00000483361 460 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 AC107208.1-201ENST00000508265 519 ntTSL 4 BASIC2.15□□□□□ -2.07
LIME1Q9H400 RNA5SP112-201ENST00000515937 99 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 RNU6-718P-201ENST00000516166 105 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.15□□□□□ -2.07
LIME1Q9H400 SNORA59B-202ENST00000578183 701 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.15□□□□□ -2.07
LIME1Q9H400 RNU6-6P-201ENST00000606623 107 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
LIME1Q9H400 FAM157A-202ENST00000615155 405 ntBASIC2.15□□□□□ -2.07
LIME1Q9H400 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.15□□□□□ -2.07
LIME1Q9H400 COPS2-203ENST00000542928 1580 ntTSL 2 BASIC2.15□□□□□ -2.07
LIME1Q9H400 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.14□□□□□ -2.07
LIME1Q9H400 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
LIME1Q9H400 RNU1-72P-201ENST00000362976 153 ntBASIC2.14□□□□□ -2.07
LIME1Q9H400 Y_RNA.295-201ENST00000364918 102 ntBASIC2.14□□□□□ -2.07
LIME1Q9H400 EIF4E2P1-201ENST00000393781 255 ntBASIC2.14□□□□□ -2.07
LIME1Q9H400 RPS29P13-201ENST00000402041 169 ntBASIC2.14□□□□□ -2.07
LIME1Q9H400 RNU6-373P-201ENST00000411247 98 ntBASIC2.14□□□□□ -2.07
LIME1Q9H400 AL135786.1-201ENST00000415892 214 ntBASIC2.14□□□□□ -2.07
LIME1Q9H400 AC074117.2-201ENST00000417130 397 ntBASIC2.14□□□□□ -2.07
LIME1Q9H400 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC2.14□□□□□ -2.07
LIME1Q9H400 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.14□□□□□ -2.07
LIME1Q9H400 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC2.14□□□□□ -2.07
LIME1Q9H400 RPL30P4-201ENST00000429309 333 ntBASIC2.14□□□□□ -2.07
LIME1Q9H400 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.14□□□□□ -2.07
LIME1Q9H400 FABP5P14-201ENST00000437273 393 ntBASIC2.14□□□□□ -2.07
LIME1Q9H400 AC007969.2-201ENST00000441891 191 ntBASIC2.14□□□□□ -2.07
LIME1Q9H400 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC2.14□□□□□ -2.07
LIME1Q9H400 AC080013.2-201ENST00000460866 323 ntBASIC2.14□□□□□ -2.07
LIME1Q9H400 AC004917.1-201ENST00000490856 575 ntTSL 4 BASIC2.14□□□□□ -2.07
LIME1Q9H400 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.14□□□□□ -2.07
LIME1Q9H400 SNORA19.2-201ENST00000516013 114 ntBASIC2.14□□□□□ -2.07
LIME1Q9H400 RNU6-548P-201ENST00000517083 115 ntBASIC2.14□□□□□ -2.07
LIME1Q9H400 SCARNA3-201ENST00000517097 143 ntBASIC2.14□□□□□ -2.07
LIME1Q9H400 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC2.14□□□□□ -2.07
LIME1Q9H400 COX6CP5-201ENST00000527162 228 ntBASIC2.14□□□□□ -2.07
LIME1Q9H400 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.14□□□□□ -2.07
LIME1Q9H400 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC2.14□□□□□ -2.07
LIME1Q9H400 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC2.14□□□□□ -2.07
LIME1Q9H400 AC103810.1-201ENST00000579873 453 ntBASIC2.14□□□□□ -2.07
LIME1Q9H400 MIR4765-201ENST00000585007 77 ntBASIC2.14□□□□□ -2.07
LIME1Q9H400 MIR5692C1-201ENST00000585309 91 ntBASIC2.14□□□□□ -2.07
LIME1Q9H400 AC060766.3-201ENST00000591442 263 ntBASIC2.14□□□□□ -2.07
LIME1Q9H400 VN1R107P-201ENST00000601784 209 ntBASIC2.14□□□□□ -2.07
LIME1Q9H400 AL356280.1-201ENST00000603614 379 ntBASIC2.14□□□□□ -2.07
LIME1Q9H400 AC046143.2-201ENST00000609789 160 ntBASIC2.14□□□□□ -2.07
LIME1Q9H400 AL137847.3-201ENST00000611521 109 ntBASIC2.14□□□□□ -2.07
LIME1Q9H400 AC007014.2-201ENST00000615581 479 ntBASIC2.14□□□□□ -2.07
LIME1Q9H400 AC026523.1-201ENST00000617221 490 ntTSL 5 BASIC2.14□□□□□ -2.07
LIME1Q9H400 TAB3-205ENST00000378933 6671 ntAPPRIS P1 TSL 1 (best) BASIC2.14□□□□□ -2.07
LIME1Q9H400 CEP57L1-201ENST00000359793 2515 ntAPPRIS P3 TSL 1 (best) BASIC2.13□□□□□ -2.07
LIME1Q9H400 AC138393.1-203ENST00000327086 343 ntBASIC2.13□□□□□ -2.07
LIME1Q9H400 RNU6-858P-201ENST00000362436 107 ntBASIC2.13□□□□□ -2.07
LIME1Q9H400 U8.8-201ENST00000365399 135 ntBASIC2.13□□□□□ -2.07
LIME1Q9H400 RNU6-877P-201ENST00000383868 107 ntBASIC2.13□□□□□ -2.07
LIME1Q9H400 Y_RNA.453-201ENST00000384223 109 ntBASIC2.13□□□□□ -2.07
LIME1Q9H400 RNU6-482P-201ENST00000391068 107 ntBASIC2.13□□□□□ -2.07
LIME1Q9H400 U6atac.2-201ENST00000408644 118 ntBASIC2.13□□□□□ -2.07
LIME1Q9H400 RNU6ATAC25P-201ENST00000408798 117 ntBASIC2.13□□□□□ -2.07
LIME1Q9H400 Z98742.2-201ENST00000431564 187 ntBASIC2.13□□□□□ -2.07
LIME1Q9H400 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.13□□□□□ -2.07
LIME1Q9H400 MTCYBP18-201ENST00000501056 747 ntBASIC2.13□□□□□ -2.07
LIME1Q9H400 AC079467.1-201ENST00000508512 503 ntTSL 3 BASIC2.13□□□□□ -2.07
LIME1Q9H400 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC2.13□□□□□ -2.07
LIME1Q9H400 MTND4LP26-201ENST00000518144 282 ntBASIC2.13□□□□□ -2.07
LIME1Q9H400 AP005597.4-201ENST00000526762 229 ntBASIC2.13□□□□□ -2.07
LIME1Q9H400 AC090124.2-201ENST00000527727 563 ntTSL 4 BASIC2.13□□□□□ -2.07
LIME1Q9H400 PSMA4-204ENST00000558094 651 ntTSL 3 BASIC2.13□□□□□ -2.07
LIME1Q9H400 MIR5092-201ENST00000583139 88 ntBASIC2.13□□□□□ -2.07
LIME1Q9H400 U6atac.1-201ENST00000616025 117 ntBASIC2.13□□□□□ -2.07
LIME1Q9H400 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.13□□□□□ -2.07
LIME1Q9H400 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC2.13□□□□□ -2.07
LIME1Q9H400 SLCO1B3-201ENST00000261196 2840 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
LIME1Q9H400 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.12□□□□□ -2.07
LIME1Q9H400 Y_RNA.157-201ENST00000363638 102 ntBASIC2.12□□□□□ -2.07
LIME1Q9H400 RNU6-220P-201ENST00000390919 107 ntBASIC2.12□□□□□ -2.07
LIME1Q9H400 5S_rRNA.2-201ENST00000391293 112 ntBASIC2.12□□□□□ -2.07
LIME1Q9H400 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC2.12□□□□□ -2.07
LIME1Q9H400 RNA5SP390-201ENST00000410191 113 ntBASIC2.12□□□□□ -2.07
LIME1Q9H400 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC2.12□□□□□ -2.07
LIME1Q9H400 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.12□□□□□ -2.07
LIME1Q9H400 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC2.12□□□□□ -2.07
LIME1Q9H400 snoU13.14-201ENST00000459372 104 ntBASIC2.12□□□□□ -2.07
LIME1Q9H400 AC121154.1-201ENST00000507299 430 ntTSL 3 BASIC2.12□□□□□ -2.07
LIME1Q9H400 AC234781.5-201ENST00000508429 271 ntBASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 161.4 ms