Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 AC005520.5-201ENST00000613926 164 ntBASIC4.35□□□□□ -1.71
TRAIPQ9BWF2 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.35□□□□□ -1.71
TRAIPQ9BWF2 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC4.35□□□□□ -1.71
TRAIPQ9BWF2 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC4.35□□□□□ -1.71
TRAIPQ9BWF2 MAPK10-362ENST00000641864 4484 ntBASIC4.34□□□□□ -1.71
TRAIPQ9BWF2 MYCBP2-211ENST00000544440 14664 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.71
TRAIPQ9BWF2 TUG1-201ENST00000519077 5673 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
TRAIPQ9BWF2 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
TRAIPQ9BWF2 RNU1-76P-201ENST00000362903 159 ntBASIC4.34□□□□□ -1.71
TRAIPQ9BWF2 SNORA68.1-201ENST00000364537 132 ntBASIC4.34□□□□□ -1.71
TRAIPQ9BWF2 AL359837.1-201ENST00000381357 287 ntBASIC4.34□□□□□ -1.71
TRAIPQ9BWF2 RNU1-139P-201ENST00000391307 165 ntBASIC4.34□□□□□ -1.71
TRAIPQ9BWF2 AL356057.3-201ENST00000402607 340 ntBASIC4.34□□□□□ -1.71
TRAIPQ9BWF2 SNORA3C-201ENST00000408792 125 ntBASIC4.34□□□□□ -1.71
TRAIPQ9BWF2 MIR1289-1-201ENST00000408836 144 ntBASIC4.34□□□□□ -1.71
TRAIPQ9BWF2 WARS2P1-201ENST00000429678 537 ntBASIC4.34□□□□□ -1.71
TRAIPQ9BWF2 AL500522.2-201ENST00000448562 343 ntBASIC4.34□□□□□ -1.71
TRAIPQ9BWF2 AC108516.1-201ENST00000503666 257 ntTSL 2 BASIC4.34□□□□□ -1.71
TRAIPQ9BWF2 HSPE1P20-201ENST00000538133 289 ntBASIC4.34□□□□□ -1.71
TRAIPQ9BWF2 AC027288.2-201ENST00000553028 243 ntBASIC4.34□□□□□ -1.71
TRAIPQ9BWF2 AC020914.4-201ENST00000597690 277 ntBASIC4.34□□□□□ -1.71
TRAIPQ9BWF2 AC010620.2-201ENST00000600135 313 ntBASIC4.34□□□□□ -1.71
TRAIPQ9BWF2 AL355297.3-201ENST00000604082 446 ntBASIC4.34□□□□□ -1.71
TRAIPQ9BWF2 ZNF804A-202ENST00000613975 3986 ntTSL 5 BASIC4.34□□□□□ -1.71
TRAIPQ9BWF2 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
TRAIPQ9BWF2 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.34□□□□□ -1.71
TRAIPQ9BWF2 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC4.34□□□□□ -1.72
TRAIPQ9BWF2 MBNL1-218ENST00000485910 4257 ntTSL 1 (best) BASIC4.33□□□□□ -1.72
TRAIPQ9BWF2 AC018555.1-201ENST00000567548 1980 ntBASIC4.33□□□□□ -1.72
TRAIPQ9BWF2 AC128685.1-201ENST00000490357 1834 ntTSL 5 BASIC4.33□□□□□ -1.72
TRAIPQ9BWF2 DDX6-206ENST00000534980 4538 ntAPPRIS P1 TSL 1 (best) BASIC4.33□□□□□ -1.72
TRAIPQ9BWF2 SNORD115-8-201ENST00000363856 82 ntBASIC4.33□□□□□ -1.72
TRAIPQ9BWF2 SNORD115-38-201ENST00000365037 82 ntBASIC4.33□□□□□ -1.72
TRAIPQ9BWF2 Y_RNA.551-201ENST00000384661 102 ntBASIC4.33□□□□□ -1.72
TRAIPQ9BWF2 RNU6-159P-201ENST00000391080 106 ntBASIC4.33□□□□□ -1.72
TRAIPQ9BWF2 MIR1252-201ENST00000408861 65 ntBASIC4.33□□□□□ -1.72
TRAIPQ9BWF2 HMGB3P2-201ENST00000411913 584 ntBASIC4.33□□□□□ -1.72
TRAIPQ9BWF2 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC4.33□□□□□ -1.72
TRAIPQ9BWF2 AL356968.1-201ENST00000416622 474 ntBASIC4.33□□□□□ -1.72
TRAIPQ9BWF2 MICF-203ENST00000432679 129 ntBASIC4.33□□□□□ -1.72
TRAIPQ9BWF2 RPS15AP7-201ENST00000439294 405 ntBASIC4.33□□□□□ -1.72
TRAIPQ9BWF2 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC4.33□□□□□ -1.72
TRAIPQ9BWF2 AP000705.1-201ENST00000454567 350 ntBASIC4.33□□□□□ -1.72
TRAIPQ9BWF2 AP006287.2-201ENST00000529036 502 ntTSL 2 BASIC4.33□□□□□ -1.72
TRAIPQ9BWF2 EIF4A1P12-201ENST00000551910 141 ntBASIC4.33□□□□□ -1.72
TRAIPQ9BWF2 MIR92B-201ENST00000607575 96 ntBASIC4.33□□□□□ -1.72
TRAIPQ9BWF2 AC069294.1-201ENST00000608397 350 ntBASIC4.33□□□□□ -1.72
TRAIPQ9BWF2 AC092636.1-201ENST00000608609 415 ntTSL 2 BASIC4.33□□□□□ -1.72
TRAIPQ9BWF2 DLEU2_2.2-201ENST00000615474 90 ntBASIC4.33□□□□□ -1.72
TRAIPQ9BWF2 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
TRAIPQ9BWF2 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC4.33□□□□□ -1.72
TRAIPQ9BWF2 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC4.33□□□□□ -1.72
TRAIPQ9BWF2 CCSAP-202ENST00000366686 4399 ntTSL 2 BASIC4.33□□□□□ -1.72
TRAIPQ9BWF2 PTGFR-203ENST00000370758 4337 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 ADAM28-201ENST00000265769 7052 ntAPPRIS P1 TSL 1 (best) BASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 SNORD35B-201ENST00000363660 87 ntBASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 RNA5SP399-201ENST00000364003 117 ntBASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 SNORA62.3-201ENST00000365110 153 ntBASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 U3.19-201ENST00000390893 196 ntBASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 SNORA48.8-201ENST00000391324 134 ntBASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 U6atac.2-201ENST00000408644 118 ntBASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 AC083863.1-201ENST00000438811 231 ntBASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 ATP2B2-IT1-201ENST00000440152 472 ntTSL 3 BASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 AL445524.1-202ENST00000440665 416 ntTSL 3 BASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 AC012081.1-201ENST00000462382 477 ntTSL 3 BASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 HMGN1P10-201ENST00000474557 553 ntBASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 RPL23AP70-201ENST00000483361 460 ntBASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 RNU4ATAC6P-201ENST00000516592 126 ntBASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 Y_RNA.713-201ENST00000517013 96 ntBASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 Y_RNA.715-201ENST00000517082 110 ntBASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 RNA5SP179-201ENST00000517284 121 ntBASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 HSPE1P18-201ENST00000517602 280 ntBASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 AC091167.4-201ENST00000605079 184 ntBASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 PCGEM1.1-201ENST00000613431 131 ntBASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 MIR6075-201ENST00000620782 95 ntBASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 AC012442.3-202ENST00000636742 206 ntBASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 HSPA8P1-201ENST00000425843 1833 ntBASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 KIAA1524-206ENST00000491772 3877 ntTSL 1 (best) BASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 ZNF204P-201ENST00000416749 2397 ntBASIC4.32□□□□□ -1.72
TRAIPQ9BWF2 AL079305.1-201ENST00000623159 3008 ntBASIC4.31□□□□□ -1.72
TRAIPQ9BWF2 RNU4-15P-201ENST00000362613 141 ntBASIC4.31□□□□□ -1.72
TRAIPQ9BWF2 Y_RNA.471-201ENST00000384312 102 ntBASIC4.31□□□□□ -1.72
TRAIPQ9BWF2 RNU6-378P-201ENST00000384324 107 ntBASIC4.31□□□□□ -1.72
TRAIPQ9BWF2 RNY3P4-201ENST00000384428 101 ntBASIC4.31□□□□□ -1.72
TRAIPQ9BWF2 RNA5SP171-201ENST00000391071 115 ntBASIC4.31□□□□□ -1.72
TRAIPQ9BWF2 HMGN2P8-201ENST00000391458 268 ntBASIC4.31□□□□□ -1.72
TRAIPQ9BWF2 SNORA3.3-201ENST00000408712 125 ntBASIC4.31□□□□□ -1.72
TRAIPQ9BWF2 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.31□□□□□ -1.72
TRAIPQ9BWF2 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC4.31□□□□□ -1.72
TRAIPQ9BWF2 RPL23AP22-201ENST00000437556 453 ntBASIC4.31□□□□□ -1.72
TRAIPQ9BWF2 RPL23AP58-201ENST00000440453 469 ntBASIC4.31□□□□□ -1.72
TRAIPQ9BWF2 AC091153.1-201ENST00000466297 402 ntBASIC4.31□□□□□ -1.72
TRAIPQ9BWF2 RN7SL323P-201ENST00000494712 295 ntBASIC4.31□□□□□ -1.72
TRAIPQ9BWF2 IGKV2-38-201ENST00000517443 247 ntBASIC4.31□□□□□ -1.72
TRAIPQ9BWF2 AC084398.2-201ENST00000551918 564 ntTSL 4 BASIC4.31□□□□□ -1.72
TRAIPQ9BWF2 AF111169.4-202ENST00000553507 262 ntTSL 3 BASIC4.31□□□□□ -1.72
TRAIPQ9BWF2 AC026470.2-201ENST00000561492 181 ntBASIC4.31□□□□□ -1.72
Retrieved 100 of 98,524 protein–RNA pairs in 124.7 ms