Protein–RNA interactions for Protein: Q9BQI4

CCDC3, Coiled-coil domain-containing protein 3, humanhuman

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3Q9BQI4 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 AC080013.2-201ENST00000460866 323 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 AP001324.2-201ENST00000461163 319 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 FAM206BP-201ENST00000510179 541 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 RNA5SP112-201ENST00000515937 99 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 RNA5SP76-201ENST00000516277 87 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 SNORA31.18-201ENST00000517043 134 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 AC103957.1-201ENST00000517681 503 ntTSL 3 BASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 AC021646.1-201ENST00000605469 484 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 RNU6-6P-201ENST00000606623 107 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 AC006504.8-201ENST00000621046 635 ntBASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 AL161782.1-201ENST00000622930 586 ntTSL 3 BASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 ESF1-202ENST00000617257 1470 ntTSL 5 BASIC2.39□□□□□ -2.03
CCDC3Q9BQI4 AC114316.2-202ENST00000502934 2957 ntTSL 2 BASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 STX7-202ENST00000367941 15791 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 RNU6-486P-201ENST00000363116 107 ntBASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 SNORD116-20-201ENST00000384529 92 ntBASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 AL162578.1-201ENST00000406202 378 ntBASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 RNU6-1328P-201ENST00000410938 106 ntBASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 AC009411.1-202ENST00000412424 548 ntTSL 4 BASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 AL162726.4-201ENST00000422010 673 ntTSL 5 BASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 AL445687.1-201ENST00000439946 251 ntBASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 AC007969.2-201ENST00000441891 191 ntBASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 MTCO2P3-201ENST00000442543 421 ntBASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 snoU13.26-201ENST00000459452 105 ntBASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 MAGI1-AS1-201ENST00000472514 591 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 AC092989.1-201ENST00000481235 277 ntBASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 RPS29P21-201ENST00000496272 170 ntBASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 RNU6-377P-201ENST00000515965 102 ntBASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 SNORA19.2-201ENST00000516013 114 ntBASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 RNU6-1038P-201ENST00000516516 104 ntBASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 BTF3P12-201ENST00000519620 469 ntBASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 AC100768.1-201ENST00000525512 506 ntTSL 3 BASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 MIR3117-201ENST00000584034 78 ntBASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 MIR5692C1-201ENST00000585309 91 ntBASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 RPS15AP11-201ENST00000594193 385 ntBASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 AP000907.4-201ENST00000604143 237 ntBASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 AL356157.2-201ENST00000605122 111 ntBASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 AC123912.5-201ENST00000605470 343 ntBASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 AC010297.1-201ENST00000623948 149 ntBASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 AL160394.1-201ENST00000624765 724 ntBASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 PTP4A2-220ENST00000627328 615 ntTSL 5 BASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 FO624990.1-201ENST00000636373 85 ntBASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
CCDC3Q9BQI4 ATP8A2P2-201ENST00000437678 1568 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 SNORD113-7-201ENST00000363762 77 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 RNU6-105P-201ENST00000363909 104 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 Y_RNA.212-201ENST00000364177 102 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 Y_RNA.248-201ENST00000364501 109 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 RNU6-128P-201ENST00000383976 107 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 RNU6-332P-201ENST00000391193 108 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 CYCSP48-201ENST00000417124 323 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 AC097463.2-201ENST00000421074 142 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 FABP5P14-201ENST00000437273 393 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 AL359672.1-201ENST00000442302 409 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 snoU13.14-201ENST00000459372 104 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 AC007547.1-201ENST00000462177 490 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 UBL5P3-201ENST00000475112 231 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 RNU6-358P-201ENST00000516564 75 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 SCARNA3-201ENST00000517097 143 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 AC090568.2-205ENST00000518631 576 ntTSL 4 BASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 AF235103.2-201ENST00000525753 346 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 COX6CP5-201ENST00000527162 228 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 AC021269.2-201ENST00000532318 330 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 PSMA3P-201ENST00000555485 635 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 AC090897.2-201ENST00000581715 130 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 MIR4765-201ENST00000585007 77 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 BNIP3P16-201ENST00000589779 534 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 RNU6-85P-201ENST00000605989 107 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 AC068944.2-201ENST00000610373 403 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 MIR3662-201ENST00000637030 95 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 ZNF280D-204ENST00000558320 3666 ntTSL 1 (best) BASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 RBBP8P1-201ENST00000449447 1844 ntBASIC2.37□□□□□ -2.03
CCDC3Q9BQI4 ENAM-201ENST00000396073 5679 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
CCDC3Q9BQI4 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC2.36□□□□□ -2.03
CCDC3Q9BQI4 AASDH-207ENST00000513376 3241 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
CCDC3Q9BQI4 RNU6-858P-201ENST00000362436 107 ntBASIC2.36□□□□□ -2.03
CCDC3Q9BQI4 RNU6-254P-201ENST00000363377 107 ntBASIC2.36□□□□□ -2.03
CCDC3Q9BQI4 RNA5SP456-201ENST00000364002 114 ntBASIC2.36□□□□□ -2.03
CCDC3Q9BQI4 RNU6-1072P-201ENST00000384703 107 ntBASIC2.36□□□□□ -2.03
CCDC3Q9BQI4 RNU6-443P-201ENST00000384780 107 ntBASIC2.36□□□□□ -2.03
CCDC3Q9BQI4 FGF7P8-201ENST00000402994 292 ntBASIC2.36□□□□□ -2.03
CCDC3Q9BQI4 Y_RNA.615-201ENST00000410769 117 ntBASIC2.36□□□□□ -2.03
CCDC3Q9BQI4 MRPS10P2-201ENST00000431226 381 ntBASIC2.36□□□□□ -2.03
CCDC3Q9BQI4 AL139415.2-201ENST00000431968 163 ntBASIC2.36□□□□□ -2.03
CCDC3Q9BQI4 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC3Q9BQI4 AC093083.1-201ENST00000438633 347 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC3Q9BQI4 LINC02041-201ENST00000440726 246 ntTSL 5 BASIC2.36□□□□□ -2.03
CCDC3Q9BQI4 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC2.36□□□□□ -2.03
CCDC3Q9BQI4 LAMTOR5P1-201ENST00000444290 270 ntBASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 117.1 ms