Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
NPAS1Q99742 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC2.82□□□□□ -1.96
NPAS1Q99742 AC073346.2-201ENST00000624724 2058 ntBASIC2.82□□□□□ -1.96
NPAS1Q99742 Y_RNA.48-201ENST00000362710 103 ntBASIC2.82□□□□□ -1.96
NPAS1Q99742 SNORA38.1-201ENST00000364172 131 ntBASIC2.82□□□□□ -1.96
NPAS1Q99742 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC2.82□□□□□ -1.96
NPAS1Q99742 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.82□□□□□ -1.96
NPAS1Q99742 RNU4-47P-201ENST00000410876 114 ntBASIC2.82□□□□□ -1.96
NPAS1Q99742 AC097463.2-201ENST00000421074 142 ntBASIC2.82□□□□□ -1.96
NPAS1Q99742 MTND4P28-201ENST00000426217 387 ntBASIC2.82□□□□□ -1.96
NPAS1Q99742 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.82□□□□□ -1.96
NPAS1Q99742 AC006028.1-201ENST00000438379 402 ntBASIC2.82□□□□□ -1.96
NPAS1Q99742 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.82□□□□□ -1.96
NPAS1Q99742 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC2.82□□□□□ -1.96
NPAS1Q99742 LINC01997-201ENST00000494900 429 ntTSL 2 BASIC2.82□□□□□ -1.96
NPAS1Q99742 AC008871.1-201ENST00000510935 398 ntTSL 3 BASIC2.82□□□□□ -1.96
NPAS1Q99742 RNU6-264P-201ENST00000517134 104 ntBASIC2.82□□□□□ -1.96
NPAS1Q99742 MIR5195-201ENST00000583555 115 ntBASIC2.82□□□□□ -1.96
NPAS1Q99742 AC005899.2-201ENST00000584353 90 ntBASIC2.82□□□□□ -1.96
NPAS1Q99742 AL355376.2-201ENST00000603866 267 ntTSL 5 BASIC2.82□□□□□ -1.96
NPAS1Q99742 DLEU2_5.1-201ENST00000615567 84 ntBASIC2.82□□□□□ -1.96
NPAS1Q99742 HMGB1P24-202ENST00000615653 685 ntBASIC2.82□□□□□ -1.96
NPAS1Q99742 PCNP-208ENST00000627393 136 ntTSL 2 BASIC2.82□□□□□ -1.96
NPAS1Q99742 AL109809.4-201ENST00000603520 2185 ntBASIC2.82□□□□□ -1.96
NPAS1Q99742 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.82□□□□□ -1.96
NPAS1Q99742 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC2.82□□□□□ -1.96
NPAS1Q99742 PRKACB-219ENST00000614872 4306 ntTSL 1 (best) BASIC2.82□□□□□ -1.96
NPAS1Q99742 MTND5P30-201ENST00000452896 1731 ntBASIC2.82□□□□□ -1.96
NPAS1Q99742 Z75746.1-201ENST00000440243 2080 ntBASIC2.81□□□□□ -1.96
NPAS1Q99742 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC2.81□□□□□ -1.96
NPAS1Q99742 ANGPTL1-201ENST00000234816 3348 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
NPAS1Q99742 GSTA3-201ENST00000211122 902 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
NPAS1Q99742 Y_RNA.146-201ENST00000363549 102 ntBASIC2.81□□□□□ -1.96
NPAS1Q99742 RNU6-142P-201ENST00000384019 107 ntBASIC2.81□□□□□ -1.96
NPAS1Q99742 SNORA9-201ENST00000384215 133 ntBASIC2.81□□□□□ -1.96
NPAS1Q99742 RNU6-622P-201ENST00000384272 103 ntBASIC2.81□□□□□ -1.96
NPAS1Q99742 RNU6-43P-201ENST00000384302 107 ntBASIC2.81□□□□□ -1.96
NPAS1Q99742 RNU6-310P-201ENST00000384655 107 ntBASIC2.81□□□□□ -1.96
NPAS1Q99742 U3.19-201ENST00000390893 196 ntBASIC2.81□□□□□ -1.96
NPAS1Q99742 Y_RNA.646-201ENST00000410980 101 ntBASIC2.81□□□□□ -1.96
NPAS1Q99742 USMG5P1-201ENST00000425964 177 ntBASIC2.81□□□□□ -1.96
NPAS1Q99742 RPS12P18-201ENST00000442381 270 ntBASIC2.81□□□□□ -1.96
NPAS1Q99742 UBE2V1P7-201ENST00000446395 340 ntBASIC2.81□□□□□ -1.96
NPAS1Q99742 AL031659.1-201ENST00000447075 539 ntBASIC2.81□□□□□ -1.96
NPAS1Q99742 TEX41-209ENST00000451478 452 ntTSL 2 BASIC2.81□□□□□ -1.96
NPAS1Q99742 AC104564.1-201ENST00000493028 407 ntBASIC2.81□□□□□ -1.96
NPAS1Q99742 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC2.81□□□□□ -1.96
NPAS1Q99742 AC008885.1-201ENST00000514930 301 ntBASIC2.81□□□□□ -1.96
NPAS1Q99742 SNORA31.6-201ENST00000516241 130 ntBASIC2.81□□□□□ -1.96
NPAS1Q99742 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.81□□□□□ -1.96
NPAS1Q99742 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.81□□□□□ -1.96
NPAS1Q99742 AC073410.2-201ENST00000603240 332 ntBASIC2.81□□□□□ -1.96
NPAS1Q99742 7SK.7-201ENST00000603504 247 ntBASIC2.81□□□□□ -1.96
NPAS1Q99742 AC080078.3-201ENST00000605407 463 ntBASIC2.81□□□□□ -1.96
NPAS1Q99742 AL133255.1-201ENST00000606374 441 ntBASIC2.81□□□□□ -1.96
NPAS1Q99742 AC092608.2-201ENST00000624427 218 ntBASIC2.81□□□□□ -1.96
NPAS1Q99742 ABCA9-AS1-203ENST00000627596 426 ntTSL 5 BASIC2.81□□□□□ -1.96
NPAS1Q99742 MIR6733-201ENST00000635723 61 ntBASIC2.81□□□□□ -1.96
NPAS1Q99742 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC2.81□□□□□ -1.96
NPAS1Q99742 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.81□□□□□ -1.96
NPAS1Q99742 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC2.81□□□□□ -1.96
NPAS1Q99742 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.81□□□□□ -1.96
NPAS1Q99742 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.81□□□□□ -1.96
NPAS1Q99742 FAM214A-204ENST00000546305 3697 ntTSL 2 BASIC2.8□□□□□ -1.96
NPAS1Q99742 AC092435.3-201ENST00000565538 3654 ntBASIC2.8□□□□□ -1.96
NPAS1Q99742 MS4A14-202ENST00000395001 3401 ntTSL 5 BASIC2.8□□□□□ -1.96
NPAS1Q99742 RBBP8-202ENST00000360790 2962 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
NPAS1Q99742 AC002543.1-201ENST00000299783 1954 ntBASIC2.8□□□□□ -1.96
NPAS1Q99742 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC2.8□□□□□ -1.96
NPAS1Q99742 Y_RNA.404-201ENST00000383978 102 ntBASIC2.8□□□□□ -1.96
NPAS1Q99742 RNU6-842P-201ENST00000384269 107 ntBASIC2.8□□□□□ -1.96
NPAS1Q99742 MIR218-1-201ENST00000384999 110 ntBASIC2.8□□□□□ -1.96
NPAS1Q99742 RPS20P15-201ENST00000412792 311 ntBASIC2.8□□□□□ -1.96
NPAS1Q99742 AC004869.2-201ENST00000436501 229 ntTSL 3 BASIC2.8□□□□□ -1.96
NPAS1Q99742 AC244670.1-201ENST00000436879 112 ntBASIC2.8□□□□□ -1.96
NPAS1Q99742 GPM6BP3-201ENST00000442797 145 ntBASIC2.8□□□□□ -1.96
NPAS1Q99742 AC097473.1-201ENST00000508142 408 ntBASIC2.8□□□□□ -1.96
NPAS1Q99742 AC093303.1-201ENST00000514549 295 ntBASIC2.8□□□□□ -1.96
NPAS1Q99742 RNA5SP112-201ENST00000515937 99 ntBASIC2.8□□□□□ -1.96
NPAS1Q99742 RNA5SP217-201ENST00000515959 91 ntBASIC2.8□□□□□ -1.96
NPAS1Q99742 RNU6-1170P-201ENST00000515974 106 ntBASIC2.8□□□□□ -1.96
NPAS1Q99742 RNA5SP76-201ENST00000516277 87 ntBASIC2.8□□□□□ -1.96
NPAS1Q99742 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.8□□□□□ -1.96
NPAS1Q99742 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC2.8□□□□□ -1.96
NPAS1Q99742 IGHVII-53-1-201ENST00000519538 255 ntBASIC2.8□□□□□ -1.96
NPAS1Q99742 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC2.8□□□□□ -1.96
NPAS1Q99742 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.8□□□□□ -1.96
NPAS1Q99742 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.8□□□□□ -1.96
NPAS1Q99742 AC025580.2-205ENST00000559960 552 ntTSL 4 BASIC2.8□□□□□ -1.96
NPAS1Q99742 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC2.8□□□□□ -1.96
NPAS1Q99742 BNIP3P22-201ENST00000593399 556 ntBASIC2.8□□□□□ -1.96
NPAS1Q99742 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.8□□□□□ -1.96
NPAS1Q99742 AC078795.3-201ENST00000602913 472 ntBASIC2.8□□□□□ -1.96
NPAS1Q99742 AL137843.1-201ENST00000605078 385 ntBASIC2.8□□□□□ -1.96
NPAS1Q99742 AL356157.2-201ENST00000605122 111 ntBASIC2.8□□□□□ -1.96
NPAS1Q99742 AL050343.2-201ENST00000607338 280 ntBASIC2.8□□□□□ -1.96
NPAS1Q99742 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC2.8□□□□□ -1.96
NPAS1Q99742 CLOCK-201ENST00000309964 10304 ntAPPRIS P1 TSL 1 (best) BASIC2.8□□□□□ -1.96
NPAS1Q99742 ZNF334-205ENST00000615481 3706 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
NPAS1Q99742 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC2.79□□□□□ -1.96
Retrieved 100 of 98,524 protein–RNA pairs in 88.2 ms