Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RNU2-64P-201ENST00000411315 191 ntBASIC3.35□□□□□ -1.87
CCDC140Q96MF4 AC004875.1-201ENST00000432702 378 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC140Q96MF4 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC140Q96MF4 AC005042.3-201ENST00000453230 174 ntBASIC3.35□□□□□ -1.87
CCDC140Q96MF4 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC140Q96MF4 AC091179.1-201ENST00000461606 579 ntBASIC3.35□□□□□ -1.87
CCDC140Q96MF4 RN7SL385P-201ENST00000468873 276 ntBASIC3.35□□□□□ -1.87
CCDC140Q96MF4 RN7SL810P-201ENST00000493031 276 ntBASIC3.35□□□□□ -1.87
CCDC140Q96MF4 LINC02269-201ENST00000509968 511 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC140Q96MF4 RNA5SP112-201ENST00000515937 99 ntBASIC3.35□□□□□ -1.87
CCDC140Q96MF4 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC3.35□□□□□ -1.87
CCDC140Q96MF4 TGIF1P1-201ENST00000558095 802 ntBASIC3.35□□□□□ -1.87
CCDC140Q96MF4 MIR5096-201ENST00000583713 70 ntBASIC3.35□□□□□ -1.87
CCDC140Q96MF4 XIST_intron.1-201ENST00000619444 68 ntBASIC3.35□□□□□ -1.87
CCDC140Q96MF4 MIR3674-201ENST00000636576 68 ntBASIC3.35□□□□□ -1.87
CCDC140Q96MF4 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC3.35□□□□□ -1.87
CCDC140Q96MF4 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
CCDC140Q96MF4 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
CCDC140Q96MF4 OR9K2-202ENST00000641329 3120 ntAPPRIS P1 BASIC3.35□□□□□ -1.87
CCDC140Q96MF4 PARPBP-203ENST00000392911 1916 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC140Q96MF4 SLC44A5-202ENST00000370859 3896 ntAPPRIS ALT2 TSL 2 BASIC3.34□□□□□ -1.87
CCDC140Q96MF4 KCNJ13-201ENST00000233826 2950 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC140Q96MF4 AC091564.4-201ENST00000533934 2194 ntBASIC3.34□□□□□ -1.87
CCDC140Q96MF4 SENP7-202ENST00000348610 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC140Q96MF4 RNU1-15P-201ENST00000353977 144 ntBASIC3.34□□□□□ -1.87
CCDC140Q96MF4 Y_RNA.200-201ENST00000364018 102 ntBASIC3.34□□□□□ -1.87
CCDC140Q96MF4 RNU6-209P-201ENST00000384118 107 ntBASIC3.34□□□□□ -1.87
CCDC140Q96MF4 RNU6-1310P-201ENST00000384153 107 ntBASIC3.34□□□□□ -1.87
CCDC140Q96MF4 SNORD58.1-201ENST00000391313 66 ntBASIC3.34□□□□□ -1.87
CCDC140Q96MF4 RNA5SP146-201ENST00000410743 123 ntBASIC3.34□□□□□ -1.87
CCDC140Q96MF4 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC140Q96MF4 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC140Q96MF4 AL136097.1-201ENST00000456945 913 ntBASIC3.34□□□□□ -1.87
CCDC140Q96MF4 RN7SL132P-201ENST00000478131 296 ntBASIC3.34□□□□□ -1.87
CCDC140Q96MF4 AC012055.2-201ENST00000504167 335 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC140Q96MF4 RNU6-155P-201ENST00000516347 100 ntBASIC3.34□□□□□ -1.87
CCDC140Q96MF4 RNU6-182P-201ENST00000516970 105 ntBASIC3.34□□□□□ -1.87
CCDC140Q96MF4 AC134698.5-201ENST00000519444 336 ntBASIC3.34□□□□□ -1.87
CCDC140Q96MF4 AP001318.2-201ENST00000533378 492 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC140Q96MF4 AP002001.1-203ENST00000534002 267 ntBASIC3.34□□□□□ -1.87
CCDC140Q96MF4 AC018904.1-201ENST00000560594 542 ntTSL 3 BASIC3.34□□□□□ -1.87
CCDC140Q96MF4 MIR3145-201ENST00000580727 82 ntBASIC3.34□□□□□ -1.87
CCDC140Q96MF4 LINC01533-202ENST00000588694 632 ntTSL 2 BASIC3.34□□□□□ -1.87
CCDC140Q96MF4 AL512605.2-201ENST00000592972 256 ntBASIC3.34□□□□□ -1.87
CCDC140Q96MF4 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC140Q96MF4 MIR7154-201ENST00000620673 73 ntBASIC3.34□□□□□ -1.87
CCDC140Q96MF4 KIAA1524-208ENST00000625495 147 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC140Q96MF4 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC140Q96MF4 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.34□□□□□ -1.87
CCDC140Q96MF4 NUDT12-201ENST00000230792 3492 ntAPPRIS P1 TSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC140Q96MF4 AC016687.3-202ENST00000505018 2404 ntTSL 1 (best) BASIC3.34□□□□□ -1.87
CCDC140Q96MF4 SNCA-213ENST00000618500 3022 ntTSL 1 (best) BASIC3.34□□□□□ -1.88
CCDC140Q96MF4 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.34□□□□□ -1.88
CCDC140Q96MF4 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC3.34□□□□□ -1.88
CCDC140Q96MF4 THNSL1-201ENST00000376356 3691 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC140Q96MF4 DEPDC1-202ENST00000456315 5331 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC140Q96MF4 MAP3K21-201ENST00000366622 4005 ntTSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC140Q96MF4 ORC4-201ENST00000264169 6598 ntAPPRIS P1 TSL 5 BASIC3.33□□□□□ -1.88
CCDC140Q96MF4 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC3.33□□□□□ -1.88
CCDC140Q96MF4 GABRG2-229ENST00000641017 3628 ntBASIC3.33□□□□□ -1.88
CCDC140Q96MF4 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.33□□□□□ -1.88
CCDC140Q96MF4 LINC00670-201ENST00000313495 2953 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC140Q96MF4 Y_RNA.117-201ENST00000363294 101 ntBASIC3.33□□□□□ -1.88
CCDC140Q96MF4 RNA5SP28-201ENST00000363841 119 ntBASIC3.33□□□□□ -1.88
CCDC140Q96MF4 RNU6-1083P-201ENST00000384022 107 ntBASIC3.33□□□□□ -1.88
CCDC140Q96MF4 MIR218-1-201ENST00000384999 110 ntBASIC3.33□□□□□ -1.88
CCDC140Q96MF4 MIR1298-201ENST00000408783 112 ntBASIC3.33□□□□□ -1.88
CCDC140Q96MF4 RNU6-651P-201ENST00000411040 105 ntBASIC3.33□□□□□ -1.88
CCDC140Q96MF4 MTCO1P5-201ENST00000433573 344 ntBASIC3.33□□□□□ -1.88
CCDC140Q96MF4 PRELID3BP1-201ENST00000457142 540 ntBASIC3.33□□□□□ -1.88
CCDC140Q96MF4 RPS26P28-201ENST00000470806 348 ntBASIC3.33□□□□□ -1.88
CCDC140Q96MF4 CFAP44-AS1-201ENST00000473329 396 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC140Q96MF4 RPS29P26-201ENST00000477483 171 ntBASIC3.33□□□□□ -1.88
CCDC140Q96MF4 RPL31P41-201ENST00000477967 372 ntBASIC3.33□□□□□ -1.88
CCDC140Q96MF4 AC091959.1-201ENST00000495857 238 ntBASIC3.33□□□□□ -1.88
CCDC140Q96MF4 KRTAP13-6P-201ENST00000508999 371 ntBASIC3.33□□□□□ -1.88
CCDC140Q96MF4 MIR449C-201ENST00000516047 92 ntBASIC3.33□□□□□ -1.88
CCDC140Q96MF4 Y_RNA.679-201ENST00000516416 91 ntBASIC3.33□□□□□ -1.88
CCDC140Q96MF4 SNORA81.3-201ENST00000517283 198 ntBASIC3.33□□□□□ -1.88
CCDC140Q96MF4 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC3.33□□□□□ -1.88
CCDC140Q96MF4 AC006064.5-201ENST00000541782 248 ntBASIC3.33□□□□□ -1.88
CCDC140Q96MF4 AC103858.1-201ENST00000607019 476 ntTSL 3 BASIC3.33□□□□□ -1.88
CCDC140Q96MF4 SNORD11B-201ENST00000607707 90 ntBASIC3.33□□□□□ -1.88
CCDC140Q96MF4 AL590240.4-201ENST00000616908 390 ntBASIC3.33□□□□□ -1.88
CCDC140Q96MF4 SMCR2_2.1-201ENST00000619783 161 ntBASIC3.33□□□□□ -1.88
CCDC140Q96MF4 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.33□□□□□ -1.88
CCDC140Q96MF4 FKTN-201ENST00000223528 7364 ntAPPRIS P1 TSL 1 (best) BASIC3.33□□□□□ -1.88
CCDC140Q96MF4 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC3.32□□□□□ -1.88
CCDC140Q96MF4 VEZT-201ENST00000261219 3435 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC140Q96MF4 PTER-201ENST00000298942 3448 ntTSL 5 BASIC3.32□□□□□ -1.88
CCDC140Q96MF4 C8orf34-203ENST00000348340 3571 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC140Q96MF4 ANKRD30BP1-201ENST00000451052 2186 ntBASIC3.32□□□□□ -1.88
CCDC140Q96MF4 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC3.32□□□□□ -1.88
CCDC140Q96MF4 VPS13C-202ENST00000261517 13400 ntAPPRIS ALT2 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC140Q96MF4 PARP8-201ENST00000281631 7177 ntAPPRIS P1 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC140Q96MF4 PTPN22-207ENST00000528414 3424 ntTSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC140Q96MF4 PTPN22-201ENST00000359785 3654 ntAPPRIS P2 TSL 1 (best) BASIC3.32□□□□□ -1.88
CCDC140Q96MF4 Y_RNA.83-201ENST00000363005 113 ntBASIC3.32□□□□□ -1.88
CCDC140Q96MF4 Y_RNA.199-201ENST00000364014 102 ntBASIC3.32□□□□□ -1.88
CCDC140Q96MF4 RNY1-201ENST00000364228 113 ntBASIC3.32□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 140.3 ms