Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 MIR6715A-201ENST00000615929 79 ntBASIC0.82□□□□□ -2.28
CCDC42Q96M95 AC024940.5-201ENST00000622889 474 ntBASIC0.82□□□□□ -2.28
CCDC42Q96M95 AC010615.1-201ENST00000594254 1764 ntBASIC0.82□□□□□ -2.28
CCDC42Q96M95 MIR340-201ENST00000362125 95 ntBASIC0.81□□□□□ -2.28
CCDC42Q96M95 RNU1-36P-201ENST00000365130 165 ntBASIC0.81□□□□□ -2.28
CCDC42Q96M95 RNU6-190P-201ENST00000384154 102 ntBASIC0.81□□□□□ -2.28
CCDC42Q96M95 TRAJ3-201ENST00000390534 62 ntAPPRIS P1 BASIC0.81□□□□□ -2.28
CCDC42Q96M95 RNU11-5P-201ENST00000391216 129 ntBASIC0.81□□□□□ -2.28
CCDC42Q96M95 RNU2-7P-201ENST00000410794 178 ntBASIC0.81□□□□□ -2.28
CCDC42Q96M95 POLR2J4-204ENST00000418424 324 ntBASIC0.81□□□□□ -2.28
CCDC42Q96M95 TXNL1P1-201ENST00000429528 554 ntBASIC0.81□□□□□ -2.28
CCDC42Q96M95 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC0.81□□□□□ -2.28
CCDC42Q96M95 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC0.81□□□□□ -2.28
CCDC42Q96M95 RPL31P3-201ENST00000458430 332 ntBASIC0.81□□□□□ -2.28
CCDC42Q96M95 RNA5SP458-201ENST00000516188 119 ntBASIC0.81□□□□□ -2.28
CCDC42Q96M95 AC009269.3-201ENST00000558429 472 ntTSL 5 BASIC0.81□□□□□ -2.28
CCDC42Q96M95 MTND3P13-201ENST00000574391 343 ntBASIC0.81□□□□□ -2.28
CCDC42Q96M95 AC025887.1-201ENST00000578349 264 ntTSL 3 BASIC0.81□□□□□ -2.28
CCDC42Q96M95 AC217774.1-201ENST00000578936 517 ntTSL 4 BASIC0.81□□□□□ -2.28
CCDC42Q96M95 MIR4661-201ENST00000582720 75 ntBASIC0.81□□□□□ -2.28
CCDC42Q96M95 MIR4653-201ENST00000585107 83 ntBASIC0.81□□□□□ -2.28
CCDC42Q96M95 AC104984.5-201ENST00000586878 94 ntBASIC0.81□□□□□ -2.28
CCDC42Q96M95 AC008507.2-201ENST00000588402 1176 ntBASIC0.81□□□□□ -2.28
CCDC42Q96M95 AC069114.2-201ENST00000604699 304 ntBASIC0.81□□□□□ -2.28
CCDC42Q96M95 AL022345.2-201ENST00000606307 135 ntBASIC0.81□□□□□ -2.28
CCDC42Q96M95 AC024060.1-201ENST00000607052 494 ntBASIC0.81□□□□□ -2.28
CCDC42Q96M95 RNU6ATAC35P-201ENST00000609276 444 ntBASIC0.81□□□□□ -2.28
CCDC42Q96M95 AC092104.1-201ENST00000497346 1441 ntBASIC0.81□□□□□ -2.28
CCDC42Q96M95 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
CCDC42Q96M95 OR5AK2-201ENST00000326855 996 ntAPPRIS P1 BASIC0.8□□□□□ -2.28
CCDC42Q96M95 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.8□□□□□ -2.28
CCDC42Q96M95 RNU6-1080P-201ENST00000383982 107 ntBASIC0.8□□□□□ -2.28
CCDC42Q96M95 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.8□□□□□ -2.28
CCDC42Q96M95 AC079395.1-201ENST00000510981 262 ntBASIC0.8□□□□□ -2.28
CCDC42Q96M95 AC079140.3-201ENST00000511111 550 ntBASIC0.8□□□□□ -2.28
CCDC42Q96M95 Y_RNA.687-201ENST00000516558 91 ntBASIC0.8□□□□□ -2.28
CCDC42Q96M95 RN7SKP88-201ENST00000516847 250 ntBASIC0.8□□□□□ -2.28
CCDC42Q96M95 CYCSP23-201ENST00000519781 313 ntBASIC0.8□□□□□ -2.28
CCDC42Q96M95 LINC02448-201ENST00000548613 583 ntTSL 2 BASIC0.8□□□□□ -2.28
CCDC42Q96M95 BNIP3P6-201ENST00000549284 499 ntBASIC0.8□□□□□ -2.28
CCDC42Q96M95 KC877982.1-201ENST00000602313 470 ntBASIC0.8□□□□□ -2.28
CCDC42Q96M95 snoU13.31-201ENST00000607291 104 ntBASIC0.8□□□□□ -2.28
CCDC42Q96M95 7SK.8-201ENST00000612110 250 ntBASIC0.8□□□□□ -2.28
CCDC42Q96M95 7SK.11-201ENST00000615477 250 ntBASIC0.8□□□□□ -2.28
CCDC42Q96M95 FAS-AS1.2-201ENST00000620386 170 ntBASIC0.8□□□□□ -2.28
CCDC42Q96M95 7SK.13-201ENST00000622040 250 ntBASIC0.8□□□□□ -2.28
CCDC42Q96M95 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC0.8□□□□□ -2.28
CCDC42Q96M95 NPAT-201ENST00000278612 6117 ntAPPRIS P2 TSL 1 (best) BASIC0.8□□□□□ -2.28
CCDC42Q96M95 AC245060.5-201ENST00000610778 3293 ntBASIC0.79□□□□□ -2.28
CCDC42Q96M95 HSBP1P2-201ENST00000299671 229 ntBASIC0.79□□□□□ -2.28
CCDC42Q96M95 SNORD56.1-201ENST00000362913 68 ntBASIC0.79□□□□□ -2.28
CCDC42Q96M95 RNU6-392P-201ENST00000364926 101 ntBASIC0.79□□□□□ -2.28
CCDC42Q96M95 TRAJ47-201ENST00000390490 57 ntAPPRIS P1 BASIC0.79□□□□□ -2.28
CCDC42Q96M95 CYCSP33-201ENST00000414485 327 ntBASIC0.79□□□□□ -2.28
CCDC42Q96M95 ELOCP17-201ENST00000414751 326 ntBASIC0.79□□□□□ -2.28
CCDC42Q96M95 ELOCP9-201ENST00000418624 239 ntBASIC0.79□□□□□ -2.28
CCDC42Q96M95 MTND4P20-201ENST00000424125 869 ntBASIC0.79□□□□□ -2.28
CCDC42Q96M95 AC006041.1-201ENST00000425322 328 ntTSL 3 BASIC0.79□□□□□ -2.28
CCDC42Q96M95 Z82205.1-201ENST00000428456 297 ntBASIC0.79□□□□□ -2.28
CCDC42Q96M95 AC244505.5-201ENST00000443639 207 ntBASIC0.79□□□□□ -2.28
CCDC42Q96M95 AL122001.1-201ENST00000457027 370 ntBASIC0.79□□□□□ -2.28
CCDC42Q96M95 AC112206.3-201ENST00000514578 389 ntBASIC0.79□□□□□ -2.28
CCDC42Q96M95 MIR449C-201ENST00000516047 92 ntBASIC0.79□□□□□ -2.28
CCDC42Q96M95 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC0.79□□□□□ -2.28
CCDC42Q96M95 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC0.79□□□□□ -2.28
CCDC42Q96M95 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC0.79□□□□□ -2.28
CCDC42Q96M95 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC0.79□□□□□ -2.28
CCDC42Q96M95 AP003049.1-201ENST00000529418 457 ntBASIC0.79□□□□□ -2.28
CCDC42Q96M95 AL590229.1-201ENST00000603497 542 ntBASIC0.79□□□□□ -2.28
CCDC42Q96M95 AL365434.2-201ENST00000607979 234 ntBASIC0.79□□□□□ -2.28
CCDC42Q96M95 AL512506.1-201ENST00000613918 449 ntBASIC0.79□□□□□ -2.28
CCDC42Q96M95 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC0.79□□□□□ -2.28
CCDC42Q96M95 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC0.79□□□□□ -2.28
CCDC42Q96M95 GNPDA2-204ENST00000509756 5382 ntAPPRIS ALT1 TSL 1 (best) BASIC0.78□□□□□ -2.28
CCDC42Q96M95 SNORA63D-201ENST00000364359 132 ntBASIC0.78□□□□□ -2.28
CCDC42Q96M95 RNU6-946P-201ENST00000383878 107 ntBASIC0.78□□□□□ -2.28
CCDC42Q96M95 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC0.78□□□□□ -2.28
CCDC42Q96M95 AC099677.2-201ENST00000436385 175 ntBASIC0.78□□□□□ -2.28
CCDC42Q96M95 LINC01073-201ENST00000441659 149 ntTSL 3 BASIC0.78□□□□□ -2.28
CCDC42Q96M95 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC0.78□□□□□ -2.28
CCDC42Q96M95 AC021146.8-201ENST00000507455 733 ntBASIC0.78□□□□□ -2.28
CCDC42Q96M95 SCARNA16.2-201ENST00000516520 172 ntBASIC0.78□□□□□ -2.28
CCDC42Q96M95 RNU6-113P-201ENST00000516653 101 ntBASIC0.78□□□□□ -2.28
CCDC42Q96M95 IL7-206ENST00000520269 456 ntTSL 3 BASIC0.78□□□□□ -2.28
CCDC42Q96M95 MIR3146-201ENST00000580367 79 ntBASIC0.78□□□□□ -2.28
CCDC42Q96M95 AC018889.1-201ENST00000605372 397 ntBASIC0.78□□□□□ -2.28
CCDC42Q96M95 AC211469.2-201ENST00000605461 205 ntBASIC0.78□□□□□ -2.28
CCDC42Q96M95 AC008945.2-201ENST00000606056 604 ntBASIC0.78□□□□□ -2.28
CCDC42Q96M95 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC0.78□□□□□ -2.28
CCDC42Q96M95 RNU5E-6P-201ENST00000365574 115 ntBASIC0.77□□□□□ -2.29
CCDC42Q96M95 RNU6-1176P-201ENST00000390955 107 ntBASIC0.77□□□□□ -2.29
CCDC42Q96M95 RAP1BP3-201ENST00000407180 549 ntBASIC0.77□□□□□ -2.29
CCDC42Q96M95 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.77□□□□□ -2.29
CCDC42Q96M95 MTND5P15-201ENST00000434246 349 ntBASIC0.77□□□□□ -2.29
CCDC42Q96M95 RPS25P9-201ENST00000435591 252 ntBASIC0.77□□□□□ -2.29
CCDC42Q96M95 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC0.77□□□□□ -2.29
CCDC42Q96M95 HMGN2P9-201ENST00000476875 229 ntBASIC0.77□□□□□ -2.29
CCDC42Q96M95 AC109445.1-201ENST00000512356 383 ntBASIC0.77□□□□□ -2.29
CCDC42Q96M95 RNU5F-2P-201ENST00000516066 82 ntBASIC0.77□□□□□ -2.29
CCDC42Q96M95 Y_RNA.689-201ENST00000516589 107 ntBASIC0.77□□□□□ -2.29
Retrieved 100 of 98,524 protein–RNA pairs in 84.4 ms