Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 SNORA40.15-201ENST00000516884 107 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 AL137100.2-201ENST00000555786 315 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 AL133279.1-202ENST00000556789 456 ntTSL 5 BASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 AC026462.2-201ENST00000565771 286 ntTSL 2 BASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 AC103988.1-201ENST00000566382 2177 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 MIR5701-3-201ENST00000578890 82 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 MIR5701-1-201ENST00000585138 82 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 ZNF99-202ENST00000596209 7817 ntTSL 5 BASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 AC010900.2-201ENST00000604508 210 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 MIR5701-2-201ENST00000615634 82 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 AP001282.2-201ENST00000616149 309 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 DLEU2_6.2-201ENST00000620994 136 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 AC110079.1-202ENST00000635213 138 ntBASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 IBTK-209ENST00000510291 4109 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 DMD-201ENST00000288447 3856 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CLIP3Q96DZ5 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 ZNF99-201ENST00000397104 3114 ntAPPRIS P1 TSL 5 BASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 AC004944.1-201ENST00000517807 3059 ntBASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 RNU5E-7P-201ENST00000365290 117 ntBASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 U8.8-201ENST00000365399 135 ntBASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 RNU6-338P-201ENST00000383888 105 ntBASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 RNU6-790P-201ENST00000384479 105 ntBASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 Y_RNA.526-201ENST00000384572 110 ntBASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 Y_RNA.533-201ENST00000384596 114 ntBASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 TRAJ31-201ENST00000390506 57 ntAPPRIS P1 BASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 RNU6-750P-201ENST00000390946 107 ntBASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 HMGN2P8-201ENST00000391458 268 ntBASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 EIF4EP2-201ENST00000422816 654 ntBASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 RPEP5-201ENST00000441137 268 ntBASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 RPL7P49-201ENST00000471402 708 ntBASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 AC098869.1-201ENST00000481627 292 ntBASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 LINC02494-201ENST00000509824 427 ntTSL 3 BASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 Y_RNA.700-201ENST00000516806 100 ntBASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 RNU6-182P-201ENST00000516970 105 ntBASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 AC034114.1-201ENST00000520293 285 ntBASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 AC130289.1-201ENST00000577321 73 ntBASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 MIR4273-201ENST00000582824 84 ntBASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 MIR3976-201ENST00000606807 139 ntBASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 AC019176.2-201ENST00000611579 315 ntBASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 RNVU1-4-201ENST00000612985 164 ntBASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 DLEU2_2.2-201ENST00000615474 90 ntBASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 AC084757.4-201ENST00000616350 526 ntBASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 AC012314.7-201ENST00000619693 93 ntBASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 MIR181A1HG-203ENST00000436880 2308 ntTSL 1 (best) BASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 RHOT1-204ENST00000394692 2960 ntTSL 2 BASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 AC025164.2-202ENST00000499685 5699 ntTSL 3 BASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.56□□□□□ -1.84
CLIP3Q96DZ5 MAPK10-373ENST00000641983 6772 ntBASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 C2orf78-201ENST00000409561 3045 ntAPPRIS P1 TSL 2 BASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 CCDC141-202ENST00000409284 6960 ntAPPRIS P2 TSL 1 (best) BASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 AC010889.1-201ENST00000566193 2666 ntBASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 SNORA19-201ENST00000384737 128 ntBASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 MIR625-201ENST00000385047 85 ntBASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 SNORD58.1-201ENST00000391313 66 ntBASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 SAR1AP2-201ENST00000392696 594 ntBASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 SNORD56-201ENST00000413522 71 ntBASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 AC017079.2-201ENST00000416102 485 ntBASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 HMGN2P31-201ENST00000432430 273 ntBASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 RPL23AP45-201ENST00000476406 468 ntBASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 AC006483.1-201ENST00000487308 313 ntBASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 ACA59.1-201ENST00000515966 143 ntBASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 RNU6-911P-201ENST00000516523 104 ntBASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 SNORA81.3-201ENST00000517283 198 ntBASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 AC109479.2-201ENST00000517842 174 ntBASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 AP002892.1-201ENST00000537727 550 ntTSL 4 BASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 AC004584.2-201ENST00000570407 410 ntBASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 AC020895.1-201ENST00000595362 272 ntBASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 AL390123.1-201ENST00000603216 237 ntBASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 SNORA62.6-201ENST00000606322 83 ntBASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 LRRC70-201ENST00000334994 2249 ntAPPRIS P1 TSL 1 (best) BASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.55□□□□□ -1.84
CLIP3Q96DZ5 FAM35CP-201ENST00000554755 2470 ntBASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 AP000560.1-201ENST00000624150 1937 ntBASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 RNU6-212P-201ENST00000362642 104 ntBASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 RNU6-942P-201ENST00000363002 107 ntBASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 Y_RNA.84-201ENST00000363011 104 ntBASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 Y_RNA.183-201ENST00000363882 113 ntBASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 RNU6-708P-201ENST00000384217 107 ntBASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 Y_RNA.471-201ENST00000384312 102 ntBASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 RNU6-1203P-201ENST00000410703 110 ntBASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 AP000275.1-201ENST00000411943 390 ntBASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 AC010745.2-201ENST00000420404 839 ntTSL 3 BASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 TTTY8-202ENST00000426035 518 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 AC004383.1-201ENST00000438135 289 ntBASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 TTTY8B-202ENST00000455570 518 ntTSL 1 (best) BASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 PRELID3BP1-201ENST00000457142 540 ntBASIC3.54□□□□□ -1.84
CLIP3Q96DZ5 AC093663.1-201ENST00000497190 394 ntBASIC3.54□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 174.9 ms