Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 EEF1A1P40-201ENST00000412883 573 ntBASIC1.21□□□□□ -2.22
LMX1AQ8TE12 UBE2V1P10-201ENST00000414685 269 ntBASIC1.21□□□□□ -2.22
LMX1AQ8TE12 AL589872.1-201ENST00000426602 288 ntBASIC1.21□□□□□ -2.22
LMX1AQ8TE12 MED13P1-201ENST00000428342 171 ntBASIC1.21□□□□□ -2.22
LMX1AQ8TE12 AC092839.1-201ENST00000433475 536 ntTSL 4 BASIC1.21□□□□□ -2.22
LMX1AQ8TE12 FAR2P3-204ENST00000434661 444 ntTSL 2 BASIC1.21□□□□□ -2.22
LMX1AQ8TE12 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC1.21□□□□□ -2.22
LMX1AQ8TE12 AC245102.2-201ENST00000448956 180 ntBASIC1.21□□□□□ -2.22
LMX1AQ8TE12 HMGN2P18-201ENST00000450680 270 ntBASIC1.21□□□□□ -2.22
LMX1AQ8TE12 AC004936.1-201ENST00000451755 361 ntTSL 3 BASIC1.21□□□□□ -2.22
LMX1AQ8TE12 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.21□□□□□ -2.22
LMX1AQ8TE12 snoU109.2-201ENST00000459316 135 ntBASIC1.21□□□□□ -2.22
LMX1AQ8TE12 COX6CP14-201ENST00000469580 174 ntBASIC1.21□□□□□ -2.22
LMX1AQ8TE12 AP000797.1-201ENST00000478870 387 ntBASIC1.21□□□□□ -2.22
LMX1AQ8TE12 AC093852.1-201ENST00000503587 266 ntBASIC1.21□□□□□ -2.22
LMX1AQ8TE12 LYRM7-202ENST00000507584 317 ntTSL 2 BASIC1.21□□□□□ -2.22
LMX1AQ8TE12 VCAN-AS1-201ENST00000512090 424 ntTSL 3 BASIC1.21□□□□□ -2.22
LMX1AQ8TE12 RNU4ATAC11P-201ENST00000515939 126 ntBASIC1.21□□□□□ -2.22
LMX1AQ8TE12 RNA5SP220-201ENST00000516298 104 ntBASIC1.21□□□□□ -2.22
LMX1AQ8TE12 RNU6-667P-201ENST00000517186 102 ntBASIC1.21□□□□□ -2.22
LMX1AQ8TE12 RN7SKP256-201ENST00000517201 314 ntBASIC1.21□□□□□ -2.22
LMX1AQ8TE12 AP001372.4-201ENST00000524889 472 ntBASIC1.21□□□□□ -2.22
LMX1AQ8TE12 LINC02546-202ENST00000528119 801 ntTSL 5 BASIC1.21□□□□□ -2.22
LMX1AQ8TE12 BNIP3P6-201ENST00000549284 499 ntBASIC1.21□□□□□ -2.22
LMX1AQ8TE12 ADI1P3-201ENST00000549509 470 ntBASIC1.21□□□□□ -2.22
LMX1AQ8TE12 AL035425.2-201ENST00000563887 563 ntAPPRIS P1 TSL 4 BASIC1.21□□□□□ -2.22
LMX1AQ8TE12 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC1.21□□□□□ -2.22
LMX1AQ8TE12 MIR548AC-201ENST00000585049 88 ntBASIC1.21□□□□□ -2.22
LMX1AQ8TE12 AC008521.1-201ENST00000587471 187 ntBASIC1.21□□□□□ -2.22
LMX1AQ8TE12 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC1.21□□□□□ -2.22
LMX1AQ8TE12 SCARNA4-202ENST00000625402 129 ntBASIC1.21□□□□□ -2.22
LMX1AQ8TE12 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
LMX1AQ8TE12 RNU6-858P-201ENST00000362436 107 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 RNU6-1210P-201ENST00000363775 107 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 RNU6-61P-201ENST00000365528 109 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC1.2□□□□□ -2.22
LMX1AQ8TE12 RNU6-1-201ENST00000383898 107 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 RNU6-42P-201ENST00000384165 107 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 RNU6-36P-201ENST00000384172 107 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 RNU6-4P-201ENST00000384205 107 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 RNU6-5P-201ENST00000384238 107 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 RNU6-3P-201ENST00000384314 107 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 SNORA24.1-201ENST00000384401 135 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 RNU6-2-201ENST00000384627 107 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 RNU6-9-201ENST00000384776 107 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 RNU6-33P-201ENST00000384793 107 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 MIR10A-201ENST00000385043 110 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 CISD1P1-201ENST00000393907 327 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 MIR1262-201ENST00000408276 93 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 LINC00301-202ENST00000412599 772 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
LMX1AQ8TE12 AL365400.1-201ENST00000431854 640 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC1.2□□□□□ -2.22
LMX1AQ8TE12 MTCYBP39-201ENST00000437562 491 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC1.2□□□□□ -2.22
LMX1AQ8TE12 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC1.2□□□□□ -2.22
LMX1AQ8TE12 RNA5SP445-201ENST00000515889 115 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 RNU1-86P-201ENST00000516108 154 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 RNU1-107P-201ENST00000516617 154 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 SNORA43.2-201ENST00000516652 128 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 RNU6-685P-201ENST00000517088 95 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC1.2□□□□□ -2.22
LMX1AQ8TE12 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC1.2□□□□□ -2.22
LMX1AQ8TE12 AC025524.2-207ENST00000520097 506 ntTSL 3 BASIC1.2□□□□□ -2.22
LMX1AQ8TE12 AC022878.1-201ENST00000530684 149 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC1.2□□□□□ -2.22
LMX1AQ8TE12 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC1.2□□□□□ -2.22
LMX1AQ8TE12 ELOCP32-201ENST00000548625 324 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 AL136038.2-201ENST00000553983 283 ntTSL 3 BASIC1.2□□□□□ -2.22
LMX1AQ8TE12 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC1.2□□□□□ -2.22
LMX1AQ8TE12 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC1.2□□□□□ -2.22
LMX1AQ8TE12 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC1.2□□□□□ -2.22
LMX1AQ8TE12 UBE2Q2P8-201ENST00000560644 102 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 AC005909.1-201ENST00000577835 755 ntTSL 3 BASIC1.2□□□□□ -2.22
LMX1AQ8TE12 SNORA4-201ENST00000584302 138 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 HMGN1P30-201ENST00000589286 268 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 AL353778.1-201ENST00000603149 408 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 AC011458.1-201ENST00000604034 617 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 RNU6-6P-201ENST00000606623 107 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC1.2□□□□□ -2.22
LMX1AQ8TE12 AC091304.9-201ENST00000612091 226 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 RMST_4.1-201ENST00000616886 107 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 U6.42-201ENST00000618440 107 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 AC093648.1-201ENST00000623546 606 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC1.2□□□□□ -2.22
LMX1AQ8TE12 AL133216.2-202ENST00000634512 349 ntBASIC1.2□□□□□ -2.22
LMX1AQ8TE12 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.19□□□□□ -2.22
LMX1AQ8TE12 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.19□□□□□ -2.22
LMX1AQ8TE12 RNU6-655P-201ENST00000362858 107 ntBASIC1.19□□□□□ -2.22
LMX1AQ8TE12 SNORD116-20-201ENST00000384529 92 ntBASIC1.19□□□□□ -2.22
LMX1AQ8TE12 RNU2-39P-201ENST00000410604 198 ntBASIC1.19□□□□□ -2.22
LMX1AQ8TE12 BTF3L4P1-201ENST00000413813 468 ntBASIC1.19□□□□□ -2.22
LMX1AQ8TE12 AC138623.1-201ENST00000418060 216 ntBASIC1.19□□□□□ -2.22
LMX1AQ8TE12 AC007283.2-201ENST00000424739 197 ntBASIC1.19□□□□□ -2.22
LMX1AQ8TE12 MYCBP2-AS2-201ENST00000428716 428 ntTSL 5 BASIC1.19□□□□□ -2.22
LMX1AQ8TE12 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC1.19□□□□□ -2.22
LMX1AQ8TE12 RPS24P1-201ENST00000438550 371 ntBASIC1.19□□□□□ -2.22
LMX1AQ8TE12 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC1.19□□□□□ -2.22
LMX1AQ8TE12 AC112492.4-201ENST00000456549 352 ntBASIC1.19□□□□□ -2.22
LMX1AQ8TE12 MTCO3P9-201ENST00000506989 781 ntBASIC1.19□□□□□ -2.22
LMX1AQ8TE12 MTCYBP40-201ENST00000509390 1135 ntBASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 112.3 ms