Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 RN7SL610P-201ENST00000463845 291 ntBASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 MTATP8P1-201ENST00000467115 207 ntBASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 BX284632.1-201ENST00000478218 541 ntBASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 AC010655.3-201ENST00000478818 450 ntBASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 AC140059.1-201ENST00000489238 361 ntBASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 AC008953.1-201ENST00000497334 318 ntBASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 AC110794.1-201ENST00000505816 425 ntBASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 MTCO2P24-201ENST00000515611 426 ntBASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 RNU6-635P-201ENST00000516651 102 ntBASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 RN7SKP49-201ENST00000516675 260 ntBASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 RNU6ATAC24P-201ENST00000516811 135 ntBASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 IGHVII-62-1-201ENST00000519283 235 ntBASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 AC009623.2-201ENST00000522524 465 ntTSL 3 BASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 LINC02164-201ENST00000566684 272 ntTSL 3 BASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 AC007598.2-201ENST00000569490 539 ntTSL 3 BASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 AC105245.1-201ENST00000581934 244 ntBASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 MIR3199-1-201ENST00000582434 88 ntBASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 MIR4527HG-203ENST00000600127 704 ntTSL 5 BASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 U6.92-201ENST00000636464 89 ntBASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 ZNF204P-201ENST00000416749 2397 ntBASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.17□□□□□ -1.9
CLRN3Q8NCR9 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 LGI1-210ENST00000629035 2251 ntTSL 5 BASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 ADGRG7-202ENST00000475887 2035 ntTSL 2 BASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 RNU6-873P-201ENST00000363833 107 ntBASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 RNU6-283P-201ENST00000364788 107 ntBASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 RNU6-281P-201ENST00000384212 103 ntBASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 MIR487A-201ENST00000385009 80 ntBASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 RNU6-1328P-201ENST00000410938 106 ntBASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 RPL30P4-201ENST00000429309 333 ntBASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 MTCYBP9-201ENST00000431021 303 ntBASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 AL772161.1-201ENST00000439130 476 ntBASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 RPL23AP58-201ENST00000440453 469 ntBASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 FCF1P4-201ENST00000448326 183 ntBASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 AC080013.2-201ENST00000460866 323 ntBASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 RN7SL826P-201ENST00000479724 288 ntBASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 SLC25A15P5-201ENST00000508033 253 ntBASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 RNU6-1143P-201ENST00000516125 104 ntBASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 AC087341.1-201ENST00000521490 491 ntTSL 2 BASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 COX6CP5-201ENST00000527162 228 ntBASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 AP002404.1-201ENST00000532005 451 ntBASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 RPL17P51-201ENST00000605218 238 ntBASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 AC069294.1-201ENST00000608397 350 ntBASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 AC090517.3-201ENST00000625170 141 ntBASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 LINC01002-227ENST00000633363 541 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 SPTY2D1-AS1-205ENST00000635674 450 ntAPPRIS ALT2 TSL 2 BASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 THEMIS-202ENST00000368250 4101 ntAPPRIS P3 TSL 5 BASIC3.16□□□□□ -1.9
CLRN3Q8NCR9 ADGRL2-207ENST00000370723 5254 ntTSL 5 BASIC3.15□□□□□ -1.9
CLRN3Q8NCR9 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC3.15□□□□□ -1.9
CLRN3Q8NCR9 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
CLRN3Q8NCR9 RGS18-201ENST00000367460 2150 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
CLRN3Q8NCR9 PTPN22-211ENST00000538253 3575 ntTSL 1 (best) BASIC3.15□□□□□ -1.9
CLRN3Q8NCR9 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.9
CLRN3Q8NCR9 DYNLT3P1-201ENST00000378574 347 ntBASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 RNU6-708P-201ENST00000384217 107 ntBASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 RNU6-196P-201ENST00000384315 107 ntBASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 MIR3065-201ENST00000390137 79 ntBASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 TRIAP1P1-201ENST00000427062 225 ntBASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 AL117341.1-201ENST00000437213 373 ntTSL 5 BASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 AC016831.4-201ENST00000438302 307 ntBASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 RPEP5-201ENST00000441137 268 ntBASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 NDUFAF4P3-201ENST00000456468 525 ntBASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 RN7SL271P-201ENST00000487601 295 ntBASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 SNORA25.14-201ENST00000516481 132 ntBASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 SNORA40.15-201ENST00000516884 107 ntBASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 CYCSP23-201ENST00000519781 313 ntBASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 AC068657.1-201ENST00000520807 306 ntBASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 ASB8-204ENST00000536071 568 ntTSL 4 BASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 AC022655.2-201ENST00000577280 318 ntBASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 MIR3667-201ENST00000581025 74 ntBASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 AC100778.1-201ENST00000583579 332 ntTSL 3 BASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 MIR3616-201ENST00000584070 92 ntBASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 AC015911.9-201ENST00000591634 185 ntTSL 5 BASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 AC125232.2-201ENST00000592457 143 ntBASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 AC022601.1-201ENST00000596954 577 ntTSL 4 BASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 AP000942.4-201ENST00000604811 241 ntBASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 Y_RNA.772-201ENST00000606692 102 ntBASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 AC010205.1-201ENST00000616668 449 ntBASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
CLRN3Q8NCR9 FZD3-201ENST00000240093 13736 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 RLIMP1-201ENST00000339626 1680 ntBASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 LRRTM2-201ENST00000274711 6017 ntAPPRIS P1 TSL 1 (best) BASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 RNU6-611P-201ENST00000384276 104 ntBASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 RNU6-463P-201ENST00000384340 107 ntBASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 Y_RNA.574-201ENST00000384766 95 ntBASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 MIR218-1-201ENST00000384999 110 ntBASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 MIR298-201ENST00000401212 88 ntBASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 RNA5SP113-201ENST00000410486 84 ntBASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 AC009969.1-201ENST00000438726 172 ntBASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 RPL21P2-201ENST00000440049 481 ntBASIC3.14□□□□□ -1.91
CLRN3Q8NCR9 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC3.14□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 154.7 ms