Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
USHBP1Q8N6Y0 PPIP5K2-215ENST00000613674 4933 ntAPPRIS ALT2 TSL 2 BASIC4.14□□□□□ -1.75
USHBP1Q8N6Y0 R3HDM1-220ENST00000628915 4325 ntTSL 5 BASIC4.14□□□□□ -1.75
USHBP1Q8N6Y0 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC4.14□□□□□ -1.75
USHBP1Q8N6Y0 Y_RNA.458-201ENST00000384240 102 ntBASIC4.14□□□□□ -1.75
USHBP1Q8N6Y0 MIR10A-201ENST00000385043 110 ntBASIC4.14□□□□□ -1.75
USHBP1Q8N6Y0 MIR34A-201ENST00000385130 110 ntBASIC4.14□□□□□ -1.75
USHBP1Q8N6Y0 MIR1290-201ENST00000408735 78 ntBASIC4.14□□□□□ -1.75
USHBP1Q8N6Y0 MORN2-203ENST00000409131 544 ntTSL 5 BASIC4.14□□□□□ -1.75
USHBP1Q8N6Y0 RPL21P38-201ENST00000418090 167 ntBASIC4.14□□□□□ -1.75
USHBP1Q8N6Y0 NDUFB4P7-201ENST00000423198 363 ntBASIC4.14□□□□□ -1.75
USHBP1Q8N6Y0 MTND3P9-201ENST00000429526 346 ntBASIC4.14□□□□□ -1.75
USHBP1Q8N6Y0 CST9LP2-201ENST00000437612 320 ntBASIC4.14□□□□□ -1.75
USHBP1Q8N6Y0 HIGD1AP2-201ENST00000446367 280 ntBASIC4.14□□□□□ -1.75
USHBP1Q8N6Y0 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC4.14□□□□□ -1.75
USHBP1Q8N6Y0 AC013470.1-201ENST00000453438 462 ntBASIC4.14□□□□□ -1.75
USHBP1Q8N6Y0 GZMAP1-201ENST00000503054 631 ntBASIC4.14□□□□□ -1.75
USHBP1Q8N6Y0 RNU6-138P-201ENST00000515952 107 ntBASIC4.14□□□□□ -1.75
USHBP1Q8N6Y0 RNU6-1256P-201ENST00000516539 103 ntBASIC4.14□□□□□ -1.75
USHBP1Q8N6Y0 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC4.14□□□□□ -1.75
USHBP1Q8N6Y0 MED28P6-201ENST00000558776 231 ntBASIC4.14□□□□□ -1.75
USHBP1Q8N6Y0 AC006023.1-201ENST00000603944 259 ntBASIC4.14□□□□□ -1.75
USHBP1Q8N6Y0 AC004825.2-201ENST00000616634 455 ntBASIC4.14□□□□□ -1.75
USHBP1Q8N6Y0 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
USHBP1Q8N6Y0 BCLAF1-213ENST00000530767 4186 ntAPPRIS ALT2 TSL 1 (best) BASIC4.14□□□□□ -1.75
USHBP1Q8N6Y0 HSPA8P1-201ENST00000425843 1833 ntBASIC4.14□□□□□ -1.75
USHBP1Q8N6Y0 CCDC178-205ENST00000406524 3039 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
USHBP1Q8N6Y0 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC4.13□□□□□ -1.75
USHBP1Q8N6Y0 USH2A-201ENST00000307340 18883 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
USHBP1Q8N6Y0 TOP2A-201ENST00000423485 5758 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
USHBP1Q8N6Y0 BCLAF1P1-201ENST00000505813 2752 ntBASIC4.13□□□□□ -1.75
USHBP1Q8N6Y0 MIR335-201ENST00000362173 94 ntBASIC4.13□□□□□ -1.75
USHBP1Q8N6Y0 Y_RNA.84-201ENST00000363011 104 ntBASIC4.13□□□□□ -1.75
USHBP1Q8N6Y0 U3.6-201ENST00000363622 211 ntBASIC4.13□□□□□ -1.75
USHBP1Q8N6Y0 SNORA71.1-201ENST00000364523 117 ntBASIC4.13□□□□□ -1.75
USHBP1Q8N6Y0 Y_RNA.785-201ENST00000384290 109 ntBASIC4.13□□□□□ -1.75
USHBP1Q8N6Y0 MIR190B-201ENST00000401119 79 ntBASIC4.13□□□□□ -1.75
USHBP1Q8N6Y0 RN7SKP220-201ENST00000410611 288 ntBASIC4.13□□□□□ -1.75
USHBP1Q8N6Y0 RNU6-1203P-201ENST00000410703 110 ntBASIC4.13□□□□□ -1.75
USHBP1Q8N6Y0 AL117337.1-201ENST00000412789 444 ntTSL 3 BASIC4.13□□□□□ -1.75
USHBP1Q8N6Y0 NHS-AS1-201ENST00000452788 366 ntTSL 3 BASIC4.13□□□□□ -1.75
USHBP1Q8N6Y0 RPL7P47-201ENST00000497299 556 ntBASIC4.13□□□□□ -1.75
USHBP1Q8N6Y0 RNU6-377P-201ENST00000515965 102 ntBASIC4.13□□□□□ -1.75
USHBP1Q8N6Y0 RRN3P3-201ENST00000549207 578 ntBASIC4.13□□□□□ -1.75
USHBP1Q8N6Y0 AC073410.2-201ENST00000603240 332 ntBASIC4.13□□□□□ -1.75
USHBP1Q8N6Y0 AP002826.1-201ENST00000608835 315 ntBASIC4.13□□□□□ -1.75
USHBP1Q8N6Y0 BIRC3-201ENST00000263464 5197 ntAPPRIS P1 TSL 1 (best) BASIC4.13□□□□□ -1.75
USHBP1Q8N6Y0 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC4.13□□□□□ -1.75
USHBP1Q8N6Y0 DICER1-203ENST00000526495 10331 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
USHBP1Q8N6Y0 CACNB4-260ENST00000637762 3800 ntTSL 5 BASIC4.13□□□□□ -1.75
USHBP1Q8N6Y0 PRKD3-202ENST00000379066 6111 ntAPPRIS P1 TSL 5 BASIC4.13□□□□□ -1.75
USHBP1Q8N6Y0 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC4.12□□□□□ -1.75
USHBP1Q8N6Y0 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
USHBP1Q8N6Y0 LBR-202ENST00000338179 3812 ntAPPRIS P1 TSL 5 BASIC4.12□□□□□ -1.75
USHBP1Q8N6Y0 SNORA7.2-201ENST00000364446 145 ntBASIC4.12□□□□□ -1.75
USHBP1Q8N6Y0 SNORA40C-201ENST00000391285 128 ntBASIC4.12□□□□□ -1.75
USHBP1Q8N6Y0 MIR1183-201ENST00000408856 89 ntBASIC4.12□□□□□ -1.75
USHBP1Q8N6Y0 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC4.12□□□□□ -1.75
USHBP1Q8N6Y0 AL139132.1-201ENST00000431587 344 ntBASIC4.12□□□□□ -1.75
USHBP1Q8N6Y0 LINC01810-201ENST00000450397 411 ntTSL 3 BASIC4.12□□□□□ -1.75
USHBP1Q8N6Y0 AC079354.2-201ENST00000453523 154 ntBASIC4.12□□□□□ -1.75
USHBP1Q8N6Y0 AC067945.3-201ENST00000456176 386 ntTSL 5 BASIC4.12□□□□□ -1.75
USHBP1Q8N6Y0 AC010285.1-201ENST00000470580 392 ntBASIC4.12□□□□□ -1.75
USHBP1Q8N6Y0 AC067942.3-201ENST00000512025 362 ntBASIC4.12□□□□□ -1.75
USHBP1Q8N6Y0 Y_RNA.700-201ENST00000516806 100 ntBASIC4.12□□□□□ -1.75
USHBP1Q8N6Y0 Y_RNA.713-201ENST00000517013 96 ntBASIC4.12□□□□□ -1.75
USHBP1Q8N6Y0 AL356133.2-201ENST00000521572 371 ntTSL 3 BASIC4.12□□□□□ -1.75
USHBP1Q8N6Y0 AL442163.3-201ENST00000554110 156 ntBASIC4.12□□□□□ -1.75
USHBP1Q8N6Y0 HMGB1P14-201ENST00000557424 591 ntBASIC4.12□□□□□ -1.75
USHBP1Q8N6Y0 AC025946.2-201ENST00000603398 234 ntBASIC4.12□□□□□ -1.75
USHBP1Q8N6Y0 HEATR5B-201ENST00000233099 6905 ntAPPRIS P1 TSL 1 (best) BASIC4.12□□□□□ -1.75
USHBP1Q8N6Y0 KIAA1107-203ENST00000637221 4337 ntTSL 1 (best) BASIC4.12□□□□□ -1.75
USHBP1Q8N6Y0 AL353746.1-201ENST00000566293 6881 ntBASIC4.12□□□□□ -1.75
USHBP1Q8N6Y0 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC4.12□□□□□ -1.75
USHBP1Q8N6Y0 ABCA5-208ENST00000588877 6525 ntAPPRIS P1 TSL 1 (best) BASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 TMEM67-202ENST00000409623 3255 ntTSL 2 BASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 AL391987.6-201ENST00000305671 199 ntBASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 RNU6-227P-201ENST00000362865 103 ntBASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 RNU6-428P-201ENST00000362942 107 ntBASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 SNORD27-201ENST00000363981 72 ntBASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 RNU6-338P-201ENST00000383888 105 ntBASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 SNORA12.2-201ENST00000391040 156 ntBASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 EEF1A1P41-201ENST00000414667 207 ntBASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 AL109914.1-201ENST00000414740 146 ntTSL 5 BASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 LHFPL3-AS1-203ENST00000417290 950 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 AC007919.1-201ENST00000429380 217 ntBASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 RPL37P4-201ENST00000448908 268 ntBASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 AL513124.1-201ENST00000450410 614 ntBASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 RPS29P27-201ENST00000463711 170 ntBASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 AC087190.1-201ENST00000484462 480 ntBASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 AC107032.1-201ENST00000485945 480 ntBASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 AC091826.1-201ENST00000514065 313 ntBASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 RNU7-175P-201ENST00000515915 61 ntBASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 SNORA31.6-201ENST00000516241 130 ntBASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 RNA5SP291-201ENST00000517222 105 ntBASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 AC104581.2-201ENST00000572227 430 ntBASIC4.11□□□□□ -1.75
USHBP1Q8N6Y0 AC005046.1-201ENST00000608515 625 ntBASIC4.11□□□□□ -1.75
Retrieved 100 of 98,524 protein–RNA pairs in 109.4 ms