Protein–RNA interactions for Protein: Q7Z6J8

UBE3D, E3 ubiquitin-protein ligase E3D, humanhuman

Predictions only

Length 389 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3DQ7Z6J8 AP000705.1-201ENST00000454567 350 ntBASIC3.85□□□□□ -1.79
UBE3DQ7Z6J8 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC3.85□□□□□ -1.79
UBE3DQ7Z6J8 RPL29P14-201ENST00000495837 428 ntBASIC3.85□□□□□ -1.79
UBE3DQ7Z6J8 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.85□□□□□ -1.79
UBE3DQ7Z6J8 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC3.85□□□□□ -1.79
UBE3DQ7Z6J8 AC025627.2-201ENST00000576220 160 ntBASIC3.85□□□□□ -1.79
UBE3DQ7Z6J8 MIR4308-201ENST00000580634 81 ntBASIC3.85□□□□□ -1.79
UBE3DQ7Z6J8 MIR6867-201ENST00000610636 67 ntBASIC3.85□□□□□ -1.79
UBE3DQ7Z6J8 AC005520.5-201ENST00000613926 164 ntBASIC3.85□□□□□ -1.79
UBE3DQ7Z6J8 MIR4727-201ENST00000622232 55 ntBASIC3.85□□□□□ -1.79
UBE3DQ7Z6J8 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.85□□□□□ -1.79
UBE3DQ7Z6J8 MIR492-201ENST00000638676 116 ntBASIC3.85□□□□□ -1.79
UBE3DQ7Z6J8 PHF20L1-210ENST00000395390 5900 ntTSL 5 BASIC3.85□□□□□ -1.79
UBE3DQ7Z6J8 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
UBE3DQ7Z6J8 AC135776.4-201ENST00000624300 1904 ntBASIC3.85□□□□□ -1.79
UBE3DQ7Z6J8 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
UBE3DQ7Z6J8 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
UBE3DQ7Z6J8 OR9G4-204ENST00000641668 2608 ntAPPRIS P1 BASIC3.85□□□□□ -1.79
UBE3DQ7Z6J8 QSER1-201ENST00000399302 9335 ntAPPRIS P1 TSL 1 (best) BASIC3.85□□□□□ -1.79
UBE3DQ7Z6J8 UBE2D3-233ENST00000618836 3472 ntAPPRIS ALT1 TSL 5 BASIC3.85□□□□□ -1.79
UBE3DQ7Z6J8 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.85□□□□□ -1.79
UBE3DQ7Z6J8 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 OTOGL-202ENST00000458043 8083 ntAPPRIS P5 TSL 5 BASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 BCHE-201ENST00000264381 2454 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 TJP1-204ENST00000400011 6764 ntAPPRIS ALT2 TSL 1 (best) BASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 RNU1-62P-201ENST00000362599 164 ntBASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 Y_RNA.308-201ENST00000365043 101 ntBASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 RNU6-1135P-201ENST00000411083 103 ntBASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 AC138623.1-201ENST00000418060 216 ntBASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 RAB28P5-201ENST00000427490 651 ntBASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 AL645939.1-201ENST00000453429 797 ntBASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 RPL23AP3-201ENST00000453844 468 ntBASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 snoU13.6-201ENST00000458785 104 ntBASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 AC146944.2-203ENST00000502493 354 ntBASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 AC139495.1-202ENST00000513164 354 ntBASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 RNU6-1219P-201ENST00000516143 112 ntBASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 RNU6-191P-201ENST00000516295 94 ntBASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 MFAP5-205ENST00000535336 566 ntTSL 4 BASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 AC027288.1-203ENST00000552167 567 ntTSL 4 BASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 CYP4A27P-201ENST00000567218 190 ntBASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 GALP-203ENST00000590002 150 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 AL078605.1-201ENST00000603529 500 ntBASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 MIR6868-201ENST00000611215 58 ntBASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 ZCCHC10-201ENST00000324170 2178 ntAPPRIS P3 TSL 1 (best) BASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.84□□□□□ -1.79
UBE3DQ7Z6J8 CUL1P1-201ENST00000509510 2425 ntBASIC3.84□□□□□ -1.8
UBE3DQ7Z6J8 DNAH12-202ENST00000351747 9542 ntTSL 5 BASIC3.84□□□□□ -1.8
UBE3DQ7Z6J8 MGA-202ENST00000545763 11413 ntAPPRIS ALT2 TSL 5 BASIC3.84□□□□□ -1.8
UBE3DQ7Z6J8 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
UBE3DQ7Z6J8 AC016588.2-201ENST00000632484 3021 ntBASIC3.84□□□□□ -1.8
UBE3DQ7Z6J8 AC092593.1-201ENST00000515413 1815 ntBASIC3.84□□□□□ -1.8
UBE3DQ7Z6J8 OTUD6B-AS1-201ENST00000522817 4275 ntTSL 2 BASIC3.84□□□□□ -1.8
UBE3DQ7Z6J8 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC3.84□□□□□ -1.8
UBE3DQ7Z6J8 AC106871.1-201ENST00000568324 3102 ntBASIC3.84□□□□□ -1.8
UBE3DQ7Z6J8 ZNF705E-201ENST00000525199 3442 ntAPPRIS P1 TSL 2 BASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 SNORA60-201ENST00000362396 134 ntBASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 SNORD74.4-201ENST00000364129 80 ntBASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 RN7SKP280-201ENST00000364196 304 ntBASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 Y_RNA.498-201ENST00000384460 102 ntBASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 SNORA70C-201ENST00000384538 135 ntBASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 SNORA1.3-201ENST00000384676 136 ntBASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 SNORA3C-201ENST00000408792 125 ntBASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 RNA5SP317-201ENST00000410176 116 ntBASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 RNA5SP306-201ENST00000411087 107 ntBASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 RNA5SP39-201ENST00000411245 120 ntBASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 RNA5SP311-201ENST00000411290 116 ntBASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 AC092941.1-201ENST00000415940 427 ntTSL 5 BASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 AC090952.1-201ENST00000424242 446 ntTSL 3 BASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 TBCAP1-201ENST00000436520 327 ntBASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 AL121594.1-201ENST00000475906 575 ntBASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 AL049830.2-201ENST00000480072 201 ntBASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 AC140059.1-201ENST00000489238 361 ntBASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 RPL31P61-201ENST00000496160 376 ntBASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 AC005840.1-201ENST00000498412 377 ntBASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 RNA5SP315-201ENST00000516340 116 ntBASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 ACA59.2-201ENST00000517061 156 ntBASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 RNA5SP312-201ENST00000517068 116 ntBASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 MTND5P41-201ENST00000517498 206 ntBASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 HIGD1AP1-201ENST00000550979 275 ntBASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 AL133393.1-201ENST00000603277 287 ntBASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 AC005828.6-201ENST00000606610 232 ntBASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 MSANTD4-206ENST00000617528 508 ntTSL 5 BASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 MYOT-208ENST00000515645 1578 ntTSL 2 BASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 ANKRD30BP1-201ENST00000451052 2186 ntBASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 PTP4A1-205ENST00000626021 2203 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 FBXO11-201ENST00000402508 3844 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
UBE3DQ7Z6J8 NFAT5-203ENST00000393742 13067 ntAPPRIS ALT1 TSL 1 (best) BASIC3.82□□□□□ -1.8
UBE3DQ7Z6J8 BMPR1B-203ENST00000440890 5388 ntTSL 2 BASIC3.82□□□□□ -1.8
UBE3DQ7Z6J8 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.82□□□□□ -1.8
UBE3DQ7Z6J8 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC3.82□□□□□ -1.8
UBE3DQ7Z6J8 COPS2-202ENST00000388901 6628 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 161.4 ms