Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 RNA5SP493-201ENST00000364115 91 ntBASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 Y_RNA.332-201ENST00000365271 113 ntBASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 Y_RNA.534-201ENST00000384599 112 ntBASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 RNU6-1025P-201ENST00000410629 104 ntBASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 AL035666.1-201ENST00000446195 348 ntBASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 ITGA9-AS1-208ENST00000449586 726 ntTSL 3 BASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 MTCO3P9-201ENST00000506989 781 ntBASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 MTCYBP43-201ENST00000513621 740 ntBASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 MTND1P36-201ENST00000522384 936 ntBASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 LINC02384-208ENST00000546086 565 ntTSL 3 BASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 AC133485.1-201ENST00000567176 124 ntBASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 AC138907.6-201ENST00000568401 126 ntBASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 XRCC4-202ENST00000338635 1579 ntAPPRIS P4 TSL 2 BASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 RNU6-1257P-201ENST00000384625 110 ntBASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 MIR1267-201ENST00000408723 78 ntBASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 AL606517.1-201ENST00000446914 387 ntBASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 RPL39P29-201ENST00000447779 157 ntBASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 AL353752.1-201ENST00000454946 260 ntBASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 SNORD116-28-201ENST00000516123 91 ntBASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 RNU6-64P-201ENST00000517119 105 ntBASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 AC005668.1-201ENST00000571142 476 ntBASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 AC022893.3-201ENST00000607665 437 ntBASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 AC006927.4-201ENST00000639187 543 ntBASIC0.92□□□□□ -2.26
CCDC88AQ3V6T2 RNY4P24-201ENST00000362735 96 ntBASIC0.91□□□□□ -2.26
CCDC88AQ3V6T2 RNU5A-8P-201ENST00000364102 114 ntBASIC0.91□□□□□ -2.26
CCDC88AQ3V6T2 AC006366.1-201ENST00000422002 759 ntBASIC0.91□□□□□ -2.26
CCDC88AQ3V6T2 FTH1P12-201ENST00000432137 551 ntBASIC0.91□□□□□ -2.26
CCDC88AQ3V6T2 ZNF736P5Y-201ENST00000451173 805 ntBASIC0.91□□□□□ -2.26
CCDC88AQ3V6T2 AL356272.1-201ENST00000454538 832 ntTSL 2 BASIC0.91□□□□□ -2.26
CCDC88AQ3V6T2 snoU109.3-201ENST00000459477 145 ntBASIC0.91□□□□□ -2.26
CCDC88AQ3V6T2 RPL30P7-201ENST00000479312 323 ntBASIC0.91□□□□□ -2.26
CCDC88AQ3V6T2 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC0.91□□□□□ -2.26
CCDC88AQ3V6T2 RRN3P3-201ENST00000549207 578 ntBASIC0.91□□□□□ -2.26
CCDC88AQ3V6T2 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC0.91□□□□□ -2.26
CCDC88AQ3V6T2 AL355816.2-201ENST00000610049 647 ntBASIC0.91□□□□□ -2.26
CCDC88AQ3V6T2 AC245297.2-201ENST00000610119 565 ntBASIC0.91□□□□□ -2.26
CCDC88AQ3V6T2 AC097478.2-201ENST00000610572 514 ntBASIC0.91□□□□□ -2.26
CCDC88AQ3V6T2 CENPF-206ENST00000614578 528 ntTSL 5 BASIC0.91□□□□□ -2.26
CCDC88AQ3V6T2 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC0.91□□□□□ -2.26
CCDC88AQ3V6T2 SCARNA4-202ENST00000625402 129 ntBASIC0.91□□□□□ -2.26
CCDC88AQ3V6T2 AC106858.1-201ENST00000637497 429 ntBASIC0.91□□□□□ -2.26
CCDC88AQ3V6T2 AC099786.3-201ENST00000565735 1410 ntBASIC0.91□□□□□ -2.26
CCDC88AQ3V6T2 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC0.9□□□□□ -2.26
CCDC88AQ3V6T2 RNY3P13-201ENST00000365542 102 ntBASIC0.9□□□□□ -2.26
CCDC88AQ3V6T2 RNU6-723P-201ENST00000383973 107 ntBASIC0.9□□□□□ -2.26
CCDC88AQ3V6T2 RNU6-16P-201ENST00000384385 107 ntBASIC0.9□□□□□ -2.26
CCDC88AQ3V6T2 USP9YP33-201ENST00000412220 421 ntBASIC0.9□□□□□ -2.26
CCDC88AQ3V6T2 MRPL35P3-201ENST00000421557 364 ntBASIC0.9□□□□□ -2.26
CCDC88AQ3V6T2 AL023581.1-201ENST00000423500 455 ntTSL 2 BASIC0.9□□□□□ -2.26
CCDC88AQ3V6T2 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC0.9□□□□□ -2.26
CCDC88AQ3V6T2 USP9YP35-201ENST00000435696 412 ntBASIC0.9□□□□□ -2.26
CCDC88AQ3V6T2 MTND4P25-201ENST00000441039 533 ntBASIC0.9□□□□□ -2.26
CCDC88AQ3V6T2 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC0.9□□□□□ -2.26
CCDC88AQ3V6T2 RNU2-10P-201ENST00000516375 211 ntBASIC0.9□□□□□ -2.26
CCDC88AQ3V6T2 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC0.9□□□□□ -2.26
CCDC88AQ3V6T2 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC0.9□□□□□ -2.26
CCDC88AQ3V6T2 BNIP3P30-201ENST00000601184 574 ntBASIC0.9□□□□□ -2.26
CCDC88AQ3V6T2 VN1R82P-201ENST00000601481 356 ntBASIC0.9□□□□□ -2.26
CCDC88AQ3V6T2 AC009269.6-201ENST00000621778 588 ntBASIC0.9□□□□□ -2.26
CCDC88AQ3V6T2 FRG1KP-201ENST00000623592 341 ntBASIC0.9□□□□□ -2.26
CCDC88AQ3V6T2 AL136313.1-201ENST00000624804 202 ntBASIC0.9□□□□□ -2.26
CCDC88AQ3V6T2 CTDSPL2-202ENST00000558373 4255 ntTSL 1 (best) BASIC0.9□□□□□ -2.27
CCDC88AQ3V6T2 OR4G2P-201ENST00000328113 903 ntBASIC0.9□□□□□ -2.27
CCDC88AQ3V6T2 RNA5SP499-201ENST00000363982 119 ntBASIC0.9□□□□□ -2.27
CCDC88AQ3V6T2 Y_RNA.433-201ENST00000384089 102 ntBASIC0.9□□□□□ -2.27
CCDC88AQ3V6T2 Y_RNA.597-201ENST00000410463 100 ntBASIC0.9□□□□□ -2.27
CCDC88AQ3V6T2 RNU2-7P-201ENST00000410794 178 ntBASIC0.9□□□□□ -2.27
CCDC88AQ3V6T2 RPL22P18-201ENST00000417197 377 ntBASIC0.9□□□□□ -2.27
CCDC88AQ3V6T2 MTND4P20-201ENST00000424125 869 ntBASIC0.9□□□□□ -2.27
CCDC88AQ3V6T2 AL592466.1-201ENST00000428346 307 ntTSL 5 BASIC0.9□□□□□ -2.27
CCDC88AQ3V6T2 HSPE1P21-201ENST00000438283 308 ntBASIC0.9□□□□□ -2.27
CCDC88AQ3V6T2 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC0.9□□□□□ -2.27
CCDC88AQ3V6T2 AC093766.1-202ENST00000513400 718 ntTSL 3 BASIC0.9□□□□□ -2.27
CCDC88AQ3V6T2 RNU6-965P-201ENST00000516721 96 ntBASIC0.9□□□□□ -2.27
CCDC88AQ3V6T2 MIR3169-201ENST00000578032 83 ntBASIC0.9□□□□□ -2.27
CCDC88AQ3V6T2 AC005357.2-201ENST00000586473 583 ntTSL 2 BASIC0.9□□□□□ -2.27
CCDC88AQ3V6T2 AC130324.3-201ENST00000614165 542 ntBASIC0.9□□□□□ -2.27
CCDC88AQ3V6T2 U6.42-201ENST00000618440 107 ntBASIC0.9□□□□□ -2.27
CCDC88AQ3V6T2 MIR3529-201ENST00000637713 78 ntBASIC0.9□□□□□ -2.27
CCDC88AQ3V6T2 Y_RNA.99-201ENST00000363138 105 ntBASIC0.89□□□□□ -2.27
CCDC88AQ3V6T2 Y_RNA.110-201ENST00000363220 99 ntBASIC0.89□□□□□ -2.27
CCDC88AQ3V6T2 MIR194-1-201ENST00000384892 85 ntBASIC0.89□□□□□ -2.27
CCDC88AQ3V6T2 AL136310.1-201ENST00000404926 654 ntBASIC0.89□□□□□ -2.27
CCDC88AQ3V6T2 RN7SKP200-201ENST00000410564 320 ntBASIC0.89□□□□□ -2.27
CCDC88AQ3V6T2 RNA5SP501-201ENST00000410990 112 ntBASIC0.89□□□□□ -2.27
CCDC88AQ3V6T2 RNU2-72P-201ENST00000411175 163 ntBASIC0.89□□□□□ -2.27
CCDC88AQ3V6T2 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.89□□□□□ -2.27
CCDC88AQ3V6T2 LARP1BP3-201ENST00000437229 869 ntBASIC0.89□□□□□ -2.27
CCDC88AQ3V6T2 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.89□□□□□ -2.27
CCDC88AQ3V6T2 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC0.89□□□□□ -2.27
CCDC88AQ3V6T2 AC087477.1-201ENST00000465747 340 ntBASIC0.89□□□□□ -2.27
CCDC88AQ3V6T2 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC0.89□□□□□ -2.27
CCDC88AQ3V6T2 AC078880.1-201ENST00000546696 553 ntTSL 4 BASIC0.89□□□□□ -2.27
CCDC88AQ3V6T2 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC0.89□□□□□ -2.27
CCDC88AQ3V6T2 AP001485.1-201ENST00000604799 199 ntBASIC0.89□□□□□ -2.27
CCDC88AQ3V6T2 AL355802.3-201ENST00000607571 545 ntBASIC0.89□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms