Protein–RNA interactions for Protein: Q12873

CHD3, Chromodomain-helicase-DNA-binding protein 3, humanhuman

Known RBP Predictions only

Length 2,000 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3Q12873 RNU6-777P-201ENST00000364265 104 ntBASIC0.65□□□□□ -2.31
CHD3Q12873 Y_RNA.472-201ENST00000384322 102 ntBASIC0.65□□□□□ -2.31
CHD3Q12873 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC0.65□□□□□ -2.31
CHD3Q12873 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC0.65□□□□□ -2.31
CHD3Q12873 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC0.65□□□□□ -2.31
CHD3Q12873 CECR9-201ENST00000453421 199 ntBASIC0.65□□□□□ -2.31
CHD3Q12873 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC0.65□□□□□ -2.31
CHD3Q12873 AC093899.1-201ENST00000457984 376 ntBASIC0.65□□□□□ -2.31
CHD3Q12873 RPL31P3-201ENST00000458430 332 ntBASIC0.65□□□□□ -2.31
CHD3Q12873 AP002075.1-201ENST00000505091 603 ntTSL 3 BASIC0.65□□□□□ -2.31
CHD3Q12873 RNU6-583P-201ENST00000516012 92 ntBASIC0.65□□□□□ -2.31
CHD3Q12873 RNU2-53P-201ENST00000516257 147 ntBASIC0.65□□□□□ -2.31
CHD3Q12873 AC010183.2-202ENST00000546791 382 ntTSL 3 BASIC0.65□□□□□ -2.31
CHD3Q12873 AC090115.3-201ENST00000553218 849 ntBASIC0.65□□□□□ -2.31
CHD3Q12873 AL132657.2-201ENST00000564417 358 ntBASIC0.65□□□□□ -2.31
CHD3Q12873 MIR3169-201ENST00000578032 83 ntBASIC0.65□□□□□ -2.31
CHD3Q12873 AC091588.1-201ENST00000578504 359 ntTSL 3 BASIC0.65□□□□□ -2.31
CHD3Q12873 AC068620.3-201ENST00000602749 560 ntBASIC0.65□□□□□ -2.31
CHD3Q12873 AL365204.3-201ENST00000612448 685 ntBASIC0.65□□□□□ -2.31
CHD3Q12873 AL109933.3-201ENST00000619095 188 ntBASIC0.65□□□□□ -2.31
CHD3Q12873 CYP3A43-217ENST00000631161 328 ntTSL 5 BASIC0.65□□□□□ -2.31
CHD3Q12873 U6.99-201ENST00000637524 83 ntBASIC0.65□□□□□ -2.31
CHD3Q12873 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.65□□□□□ -2.31
CHD3Q12873 RNU5B-4P-201ENST00000363508 111 ntBASIC0.64□□□□□ -2.31
CHD3Q12873 RNU6-1019P-201ENST00000364424 107 ntBASIC0.64□□□□□ -2.31
CHD3Q12873 SNORA72.2-201ENST00000365028 127 ntBASIC0.64□□□□□ -2.31
CHD3Q12873 RNU6-395P-201ENST00000365662 106 ntBASIC0.64□□□□□ -2.31
CHD3Q12873 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC0.64□□□□□ -2.31
CHD3Q12873 MIR320C1-201ENST00000408566 88 ntBASIC0.64□□□□□ -2.31
CHD3Q12873 AL353621.1-201ENST00000418219 243 ntBASIC0.64□□□□□ -2.31
CHD3Q12873 UBE2D3P3-201ENST00000426992 425 ntBASIC0.64□□□□□ -2.31
CHD3Q12873 MTND5P15-201ENST00000434246 349 ntBASIC0.64□□□□□ -2.31
CHD3Q12873 USP9YP17-201ENST00000444617 696 ntBASIC0.64□□□□□ -2.31
CHD3Q12873 Y_RNA.689-201ENST00000516589 107 ntBASIC0.64□□□□□ -2.31
CHD3Q12873 DEFB130C-202ENST00000530001 230 ntBASIC0.64□□□□□ -2.31
CHD3Q12873 AL589743.1-201ENST00000551932 2712 ntBASIC0.64□□□□□ -2.31
CHD3Q12873 UBE2Q2P8-201ENST00000560644 102 ntBASIC0.64□□□□□ -2.31
CHD3Q12873 AC026470.3-201ENST00000563994 438 ntTSL 3 BASIC0.64□□□□□ -2.31
CHD3Q12873 MTATP6P25-201ENST00000574491 261 ntBASIC0.64□□□□□ -2.31
CHD3Q12873 MIR4653-201ENST00000585107 83 ntBASIC0.64□□□□□ -2.31
CHD3Q12873 AF038458.1-201ENST00000588406 262 ntBASIC0.64□□□□□ -2.31
CHD3Q12873 AC009229.3-201ENST00000608056 282 ntBASIC0.64□□□□□ -2.31
CHD3Q12873 OR4G2P-201ENST00000328113 903 ntBASIC0.64□□□□□ -2.31
CHD3Q12873 MIR608-201ENST00000384820 100 ntBASIC0.64□□□□□ -2.31
CHD3Q12873 RNU2-36P-201ENST00000410361 191 ntBASIC0.64□□□□□ -2.31
CHD3Q12873 AL109924.3-201ENST00000413324 393 ntTSL 2 BASIC0.64□□□□□ -2.31
CHD3Q12873 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC0.64□□□□□ -2.31
CHD3Q12873 RPL21P111-201ENST00000418453 477 ntBASIC0.64□□□□□ -2.31
CHD3Q12873 LINC00446-202ENST00000438327 357 ntTSL 3 BASIC0.64□□□□□ -2.31
CHD3Q12873 AC092625.1-201ENST00000442706 393 ntTSL 3 BASIC0.64□□□□□ -2.31
CHD3Q12873 AC091770.1-201ENST00000456513 373 ntTSL 2 BASIC0.64□□□□□ -2.31
CHD3Q12873 AC114982.1-201ENST00000469402 321 ntBASIC0.64□□□□□ -2.31
CHD3Q12873 AC116655.1-201ENST00000508324 901 ntBASIC0.64□□□□□ -2.31
CHD3Q12873 RNU6-334P-201ENST00000517072 102 ntBASIC0.64□□□□□ -2.31
CHD3Q12873 AC011377.1-201ENST00000517708 275 ntTSL 3 BASIC0.64□□□□□ -2.31
CHD3Q12873 AC009712.1-201ENST00000564938 316 ntBASIC0.64□□□□□ -2.31
CHD3Q12873 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC0.64□□□□□ -2.31
CHD3Q12873 AC022022.2-201ENST00000602989 360 ntBASIC0.64□□□□□ -2.31
CHD3Q12873 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC0.64□□□□□ -2.31
CHD3Q12873 SNRPE-201ENST00000367208 355 ntTSL 2 BASIC0.63□□□□□ -2.31
CHD3Q12873 RNU6-26P-201ENST00000383985 107 ntBASIC0.63□□□□□ -2.31
CHD3Q12873 MIR19A-201ENST00000384878 82 ntBASIC0.63□□□□□ -2.31
CHD3Q12873 RNU2-3P-201ENST00000410144 191 ntBASIC0.63□□□□□ -2.31
CHD3Q12873 PIGFP2-201ENST00000421400 651 ntBASIC0.63□□□□□ -2.31
CHD3Q12873 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC0.63□□□□□ -2.31
CHD3Q12873 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC0.63□□□□□ -2.31
CHD3Q12873 RNA5SP57-201ENST00000459463 123 ntBASIC0.63□□□□□ -2.31
CHD3Q12873 AHI1-208ENST00000488690 712 ntTSL 5 BASIC0.63□□□□□ -2.31
CHD3Q12873 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC0.63□□□□□ -2.31
CHD3Q12873 AC109445.1-201ENST00000512356 383 ntBASIC0.63□□□□□ -2.31
CHD3Q12873 RNU6-667P-201ENST00000517186 102 ntBASIC0.63□□□□□ -2.31
CHD3Q12873 RNU6-902P-201ENST00000517212 91 ntBASIC0.63□□□□□ -2.31
CHD3Q12873 AC133485.1-201ENST00000567176 124 ntBASIC0.63□□□□□ -2.31
CHD3Q12873 AC138907.6-201ENST00000568401 126 ntBASIC0.63□□□□□ -2.31
CHD3Q12873 AC136932.1-201ENST00000574771 208 ntBASIC0.63□□□□□ -2.31
CHD3Q12873 AL109811.3-202ENST00000612387 651 ntTSL 3 BASIC0.63□□□□□ -2.31
CHD3Q12873 TUG1_2.1-201ENST00000614234 87 ntBASIC0.63□□□□□ -2.31
CHD3Q12873 AC130454.1-201ENST00000622948 401 ntBASIC0.63□□□□□ -2.31
CHD3Q12873 AC004808.1-201ENST00000627671 721 ntBASIC0.63□□□□□ -2.31
CHD3Q12873 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC0.63□□□□□ -2.31
CHD3Q12873 RNU6-853P-201ENST00000364306 107 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 Y_RNA.294-201ENST00000364916 102 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 RNU6-946P-201ENST00000383878 107 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 SNORD116-12-201ENST00000384468 92 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 Y_RNA.623-201ENST00000411128 95 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 UBE2V1P10-201ENST00000414685 269 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC0.62□□□□□ -2.31
CHD3Q12873 AL161651.1-201ENST00000440882 223 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 MTND4P25-201ENST00000441039 533 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 MTND2P4-201ENST00000445034 1004 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 AL096829.2-201ENST00000446582 742 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 AC132479.1-201ENST00000449160 144 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 AC013269.3-201ENST00000450486 444 ntTSL 3 BASIC0.62□□□□□ -2.31
CHD3Q12873 AC087477.1-201ENST00000465747 340 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 RPS27P22-201ENST00000478056 241 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 AC099513.1-201ENST00000490423 301 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 HMGB1P30-201ENST00000492455 606 ntBASIC0.62□□□□□ -2.31
CHD3Q12873 AC092892.1-201ENST00000496067 327 ntTSL 5 BASIC0.62□□□□□ -2.31
CHD3Q12873 AC104137.1-201ENST00000503625 385 ntTSL 3 BASIC0.62□□□□□ -2.31
CHD3Q12873 AC074344.1-201ENST00000512823 224 ntBASIC0.62□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 119.6 ms