Protein–RNA interactions for Protein: P78367

NKX3-2, Homeobox protein Nkx-3.2, humanhuman

Predictions only

Length 333 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-2P78367 SNORD27-201ENST00000363981 72 ntBASIC3.75□□□□□ -1.81
NKX3-2P78367 RNU6-72P-201ENST00000384285 79 ntBASIC3.75□□□□□ -1.81
NKX3-2P78367 U3.26-201ENST00000391236 204 ntBASIC3.75□□□□□ -1.81
NKX3-2P78367 HSPE1P26-201ENST00000405341 275 ntBASIC3.75□□□□□ -1.81
NKX3-2P78367 MTCYBP2-201ENST00000407745 171 ntBASIC3.75□□□□□ -1.81
NKX3-2P78367 AL590135.1-201ENST00000422215 156 ntBASIC3.75□□□□□ -1.81
NKX3-2P78367 SDAD1P3-201ENST00000427380 333 ntBASIC3.75□□□□□ -1.81
NKX3-2P78367 MTND5P15-201ENST00000434246 349 ntBASIC3.75□□□□□ -1.81
NKX3-2P78367 Z82188.1-201ENST00000436709 154 ntBASIC3.75□□□□□ -1.81
NKX3-2P78367 SNRPEP9-201ENST00000436794 238 ntBASIC3.75□□□□□ -1.81
NKX3-2P78367 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC3.75□□□□□ -1.81
NKX3-2P78367 AC006445.1-201ENST00000491925 405 ntBASIC3.75□□□□□ -1.81
NKX3-2P78367 AC010265.1-201ENST00000513509 211 ntBASIC3.75□□□□□ -1.81
NKX3-2P78367 UBE2Q2P8-201ENST00000560644 102 ntBASIC3.75□□□□□ -1.81
NKX3-2P78367 AC104581.2-201ENST00000572227 430 ntBASIC3.75□□□□□ -1.81
NKX3-2P78367 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.75□□□□□ -1.81
NKX3-2P78367 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC3.75□□□□□ -1.81
NKX3-2P78367 AC060766.3-201ENST00000591442 263 ntBASIC3.75□□□□□ -1.81
NKX3-2P78367 U7.8-201ENST00000619968 63 ntBASIC3.75□□□□□ -1.81
NKX3-2P78367 U6.92-201ENST00000636464 89 ntBASIC3.75□□□□□ -1.81
NKX3-2P78367 U6.99-201ENST00000637524 83 ntBASIC3.75□□□□□ -1.81
NKX3-2P78367 AC068647.1-201ENST00000489539 2265 ntBASIC3.75□□□□□ -1.81
NKX3-2P78367 LATS1-201ENST00000253339 4256 ntAPPRIS P1 TSL 1 (best) BASIC3.75□□□□□ -1.81
NKX3-2P78367 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.74□□□□□ -1.81
NKX3-2P78367 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
NKX3-2P78367 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.74□□□□□ -1.81
NKX3-2P78367 Y_RNA.237-201ENST00000364439 102 ntBASIC3.74□□□□□ -1.81
NKX3-2P78367 U3.13-201ENST00000364804 214 ntBASIC3.74□□□□□ -1.81
NKX3-2P78367 HDX-202ENST00000373177 2924 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
NKX3-2P78367 Y_RNA.478-201ENST00000384358 107 ntBASIC3.74□□□□□ -1.81
NKX3-2P78367 Y_RNA.539-201ENST00000384635 107 ntBASIC3.74□□□□□ -1.81
NKX3-2P78367 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC3.74□□□□□ -1.81
NKX3-2P78367 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.74□□□□□ -1.81
NKX3-2P78367 AL590383.1-201ENST00000428602 75 ntBASIC3.74□□□□□ -1.81
NKX3-2P78367 Z82210.1-201ENST00000440037 231 ntBASIC3.74□□□□□ -1.81
NKX3-2P78367 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
NKX3-2P78367 AC097462.2-201ENST00000504623 481 ntBASIC3.74□□□□□ -1.81
NKX3-2P78367 SNORA31.18-201ENST00000517043 134 ntBASIC3.74□□□□□ -1.81
NKX3-2P78367 RN7SKP289-201ENST00000517244 295 ntBASIC3.74□□□□□ -1.81
NKX3-2P78367 AC092120.1-201ENST00000562211 420 ntTSL 3 BASIC3.74□□□□□ -1.81
NKX3-2P78367 CYCSP39-201ENST00000565821 309 ntBASIC3.74□□□□□ -1.81
NKX3-2P78367 AC136932.1-201ENST00000574771 208 ntBASIC3.74□□□□□ -1.81
NKX3-2P78367 MIR5047-201ENST00000579212 100 ntBASIC3.74□□□□□ -1.81
NKX3-2P78367 LARP7P3-201ENST00000579888 337 ntBASIC3.74□□□□□ -1.81
NKX3-2P78367 AC016747.2-202ENST00000607743 332 ntTSL 5 BASIC3.74□□□□□ -1.81
NKX3-2P78367 MIR6852-201ENST00000621699 66 ntBASIC3.74□□□□□ -1.81
NKX3-2P78367 AC008568.2-201ENST00000623862 2313 ntBASIC3.74□□□□□ -1.81
NKX3-2P78367 AC243829.7-201ENST00000633081 225 ntBASIC3.74□□□□□ -1.81
NKX3-2P78367 UBE2W-203ENST00000517608 8426 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
NKX3-2P78367 NCAM2-201ENST00000284894 4699 ntAPPRIS ALT2 TSL 5 BASIC3.74□□□□□ -1.81
NKX3-2P78367 PDE1A-205ENST00000435564 4885 ntAPPRIS P3 TSL 1 (best) BASIC3.74□□□□□ -1.81
NKX3-2P78367 SYNE2-202ENST00000344113 21777 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
NKX3-2P78367 ADGRL2-210ENST00000370728 6302 ntAPPRIS ALT2 TSL 5 BASIC3.73□□□□□ -1.81
NKX3-2P78367 AL033397.1-201ENST00000502390 3653 ntTSL 2 BASIC3.73□□□□□ -1.81
NKX3-2P78367 RGPD1-202ENST00000409776 6692 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
NKX3-2P78367 Y_RNA.20-201ENST00000362479 113 ntBASIC3.73□□□□□ -1.81
NKX3-2P78367 SNORA80A-201ENST00000363922 136 ntBASIC3.73□□□□□ -1.81
NKX3-2P78367 RNU6-283P-201ENST00000364788 107 ntBASIC3.73□□□□□ -1.81
NKX3-2P78367 Z98749.2-208ENST00000381646 500 ntBASIC3.73□□□□□ -1.81
NKX3-2P78367 RNU6-338P-201ENST00000383888 105 ntBASIC3.73□□□□□ -1.81
NKX3-2P78367 Y_RNA.416-201ENST00000384014 113 ntBASIC3.73□□□□□ -1.81
NKX3-2P78367 SNORD115-46-201ENST00000390982 71 ntBASIC3.73□□□□□ -1.81
NKX3-2P78367 RNA5SP31-201ENST00000411144 127 ntBASIC3.73□□□□□ -1.81
NKX3-2P78367 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.73□□□□□ -1.81
NKX3-2P78367 LINC01349-201ENST00000416343 497 ntTSL 3 BASIC3.73□□□□□ -1.81
NKX3-2P78367 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC3.73□□□□□ -1.81
NKX3-2P78367 TOMM22P6-201ENST00000465035 409 ntBASIC3.73□□□□□ -1.81
NKX3-2P78367 RN7SL330P-201ENST00000469709 307 ntBASIC3.73□□□□□ -1.81
NKX3-2P78367 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC3.73□□□□□ -1.81
NKX3-2P78367 MRPS36P4-201ENST00000534436 298 ntBASIC3.73□□□□□ -1.81
NKX3-2P78367 SYF2P1-201ENST00000550658 413 ntBASIC3.73□□□□□ -1.81
NKX3-2P78367 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.73□□□□□ -1.81
NKX3-2P78367 AC026470.2-201ENST00000561492 181 ntBASIC3.73□□□□□ -1.81
NKX3-2P78367 RPL23AP78-201ENST00000599928 470 ntBASIC3.73□□□□□ -1.81
NKX3-2P78367 HNRNPDLP4-201ENST00000605144 301 ntBASIC3.73□□□□□ -1.81
NKX3-2P78367 XIST_intron.1-201ENST00000619444 68 ntBASIC3.73□□□□□ -1.81
NKX3-2P78367 AC097372.5-201ENST00000623665 376 ntBASIC3.73□□□□□ -1.81
NKX3-2P78367 GYPB-216ENST00000638448 363 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
NKX3-2P78367 FAM35BP-202ENST00000497389 3337 ntBASIC3.73□□□□□ -1.81
NKX3-2P78367 CRISPLD1-205ENST00000523524 2100 ntTSL 2 BASIC3.73□□□□□ -1.81
NKX3-2P78367 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC3.73□□□□□ -1.81
NKX3-2P78367 ERBIN-214ENST00000511297 4257 ntAPPRIS ALT1 TSL 5 BASIC3.73□□□□□ -1.81
NKX3-2P78367 DNAJC10-201ENST00000264065 20129 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
NKX3-2P78367 MS4A1-212ENST00000534668 3475 ntAPPRIS P1 TSL 2 BASIC3.72□□□□□ -1.81
NKX3-2P78367 RNU6-200P-201ENST00000364743 107 ntBASIC3.72□□□□□ -1.81
NKX3-2P78367 Y_RNA.500-201ENST00000384466 111 ntBASIC3.72□□□□□ -1.81
NKX3-2P78367 RNU6-140P-201ENST00000384566 108 ntBASIC3.72□□□□□ -1.81
NKX3-2P78367 RNU2-14P-201ENST00000411053 191 ntBASIC3.72□□□□□ -1.81
NKX3-2P78367 ARF4P2-201ENST00000430209 526 ntBASIC3.72□□□□□ -1.81
NKX3-2P78367 GZMAP1-201ENST00000503054 631 ntBASIC3.72□□□□□ -1.81
NKX3-2P78367 AC108067.1-201ENST00000514304 215 ntTSL 5 BASIC3.72□□□□□ -1.81
NKX3-2P78367 RNU7-175P-201ENST00000515915 61 ntBASIC3.72□□□□□ -1.81
NKX3-2P78367 RNA5SP341-201ENST00000516261 117 ntBASIC3.72□□□□□ -1.81
NKX3-2P78367 RN7SKP83-201ENST00000516512 178 ntBASIC3.72□□□□□ -1.81
NKX3-2P78367 Y_RNA.706-201ENST00000516933 99 ntBASIC3.72□□□□□ -1.81
NKX3-2P78367 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.72□□□□□ -1.81
NKX3-2P78367 AP002770.2-201ENST00000543613 532 ntBASIC3.72□□□□□ -1.81
NKX3-2P78367 AC093732.2-201ENST00000607950 274 ntBASIC3.72□□□□□ -1.81
NKX3-2P78367 RNVU1-4-201ENST00000612985 164 ntBASIC3.72□□□□□ -1.81
NKX3-2P78367 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 116.5 ms