Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 AP001189.6-201ENST00000528781 831 ntTSL 1 (best) BASIC2.2□□□□□ -2.06
CDX1P47902 MRPL51-203ENST00000538814 501 ntTSL 2 BASIC2.2□□□□□ -2.06
CDX1P47902 GTF3AP2-201ENST00000557014 266 ntBASIC2.2□□□□□ -2.06
CDX1P47902 AC044840.1-201ENST00000577641 472 ntTSL 3 BASIC2.2□□□□□ -2.06
CDX1P47902 AL033523.1-201ENST00000605153 153 ntBASIC2.2□□□□□ -2.06
CDX1P47902 AC005046.1-201ENST00000608515 625 ntBASIC2.2□□□□□ -2.06
CDX1P47902 AC008162.2-201ENST00000613352 291 ntAPPRIS P1 TSL 3 BASIC2.2□□□□□ -2.06
CDX1P47902 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.2□□□□□ -2.06
CDX1P47902 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
CDX1P47902 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.19□□□□□ -2.06
CDX1P47902 Y_RNA.6-201ENST00000362350 114 ntBASIC2.19□□□□□ -2.06
CDX1P47902 RNU6-1141P-201ENST00000364520 107 ntBASIC2.19□□□□□ -2.06
CDX1P47902 RNU6-877P-201ENST00000383868 107 ntBASIC2.19□□□□□ -2.06
CDX1P47902 Y_RNA.450-201ENST00000384198 113 ntBASIC2.19□□□□□ -2.06
CDX1P47902 RNU6-43P-201ENST00000384302 107 ntBASIC2.19□□□□□ -2.06
CDX1P47902 MIR512-1-201ENST00000384913 84 ntBASIC2.19□□□□□ -2.06
CDX1P47902 MIR450B-201ENST00000401182 78 ntBASIC2.19□□□□□ -2.06
CDX1P47902 AL591034.2-201ENST00000402839 359 ntBASIC2.19□□□□□ -2.06
CDX1P47902 Y_RNA.615-201ENST00000410769 117 ntBASIC2.19□□□□□ -2.06
CDX1P47902 MRPS10P2-201ENST00000431226 381 ntBASIC2.19□□□□□ -2.06
CDX1P47902 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC2.19□□□□□ -2.06
CDX1P47902 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.19□□□□□ -2.06
CDX1P47902 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.19□□□□□ -2.06
CDX1P47902 AC068781.1-201ENST00000488231 618 ntBASIC2.19□□□□□ -2.06
CDX1P47902 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.19□□□□□ -2.06
CDX1P47902 RNU5F-2P-201ENST00000516066 82 ntBASIC2.19□□□□□ -2.06
CDX1P47902 RNU1-104P-201ENST00000517280 175 ntBASIC2.19□□□□□ -2.06
CDX1P47902 AC104576.1-201ENST00000524225 88 ntBASIC2.19□□□□□ -2.06
CDX1P47902 CYCSP26-201ENST00000534107 320 ntBASIC2.19□□□□□ -2.06
CDX1P47902 HSPE1P4-201ENST00000550617 308 ntBASIC2.19□□□□□ -2.06
CDX1P47902 PRELID2P1-201ENST00000552837 301 ntBASIC2.19□□□□□ -2.06
CDX1P47902 MIR3605-201ENST00000583214 100 ntBASIC2.19□□□□□ -2.06
CDX1P47902 AL512625.3-207ENST00000609749 477 ntTSL 3 BASIC2.19□□□□□ -2.06
CDX1P47902 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC2.19□□□□□ -2.06
CDX1P47902 AC063943.3-201ENST00000615562 356 ntBASIC2.19□□□□□ -2.06
CDX1P47902 AP006437.1-201ENST00000641440 3685 ntBASIC2.19□□□□□ -2.06
CDX1P47902 CYSLTR1-203ENST00000614798 2681 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
CDX1P47902 WWP1-201ENST00000265428 3362 ntAPPRIS P1 TSL 1 (best) BASIC2.19□□□□□ -2.06
CDX1P47902 AC121333.1-201ENST00000567488 2709 ntBASIC2.19□□□□□ -2.06
CDX1P47902 RNU6-451P-201ENST00000362921 107 ntBASIC2.18□□□□□ -2.06
CDX1P47902 RNU1-23P-201ENST00000363361 144 ntBASIC2.18□□□□□ -2.06
CDX1P47902 RNU6-1285P-201ENST00000363480 105 ntBASIC2.18□□□□□ -2.06
CDX1P47902 SNORA18.3-201ENST00000384122 132 ntBASIC2.18□□□□□ -2.06
CDX1P47902 Y_RNA.453-201ENST00000384223 109 ntBASIC2.18□□□□□ -2.06
CDX1P47902 RNU6-1274P-201ENST00000384557 107 ntBASIC2.18□□□□□ -2.06
CDX1P47902 MIR29B2-201ENST00000385055 81 ntBASIC2.18□□□□□ -2.06
CDX1P47902 MIR9-1-201ENST00000385198 89 ntBASIC2.18□□□□□ -2.06
CDX1P47902 RNU6-332P-201ENST00000391193 108 ntBASIC2.18□□□□□ -2.06
CDX1P47902 HMGB3P2-201ENST00000411913 584 ntBASIC2.18□□□□□ -2.06
CDX1P47902 SNAP23P1-201ENST00000433229 246 ntBASIC2.18□□□□□ -2.06
CDX1P47902 AC244670.1-201ENST00000436879 112 ntBASIC2.18□□□□□ -2.06
CDX1P47902 AL359672.1-201ENST00000442302 409 ntBASIC2.18□□□□□ -2.06
CDX1P47902 RNA5SP356-201ENST00000515972 94 ntBASIC2.18□□□□□ -2.06
CDX1P47902 RNU6-1332P-201ENST00000516666 104 ntBASIC2.18□□□□□ -2.06
CDX1P47902 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.18□□□□□ -2.06
CDX1P47902 AP005597.4-201ENST00000526762 229 ntBASIC2.18□□□□□ -2.06
CDX1P47902 AP000889.1-201ENST00000530968 660 ntBASIC2.18□□□□□ -2.06
CDX1P47902 AC118273.2-201ENST00000532092 465 ntBASIC2.18□□□□□ -2.06
CDX1P47902 AC007375.1-201ENST00000554513 578 ntBASIC2.18□□□□□ -2.06
CDX1P47902 MIR3126-201ENST00000577443 74 ntBASIC2.18□□□□□ -2.06
CDX1P47902 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.18□□□□□ -2.06
CDX1P47902 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC2.18□□□□□ -2.06
CDX1P47902 AC009314.1-201ENST00000603871 304 ntBASIC2.18□□□□□ -2.06
CDX1P47902 AL356157.2-201ENST00000605122 111 ntBASIC2.18□□□□□ -2.06
CDX1P47902 SNORD14A-201ENST00000606526 91 ntBASIC2.18□□□□□ -2.06
CDX1P47902 AC064836.2-201ENST00000609491 462 ntBASIC2.18□□□□□ -2.06
CDX1P47902 AC024614.3-201ENST00000637860 256 ntBASIC2.18□□□□□ -2.06
CDX1P47902 AC073869.6-201ENST00000640656 341 ntBASIC2.18□□□□□ -2.06
CDX1P47902 ZMYM1-201ENST00000359858 4175 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
CDX1P47902 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
CDX1P47902 ARHGAP5-202ENST00000345122 9604 ntAPPRIS P3 TSL 5 BASIC2.17□□□□□ -2.06
CDX1P47902 AC027514.1-201ENST00000588561 1603 ntBASIC2.17□□□□□ -2.06
CDX1P47902 TMEM232-201ENST00000455884 2501 ntAPPRIS P2 TSL 2 BASIC2.17□□□□□ -2.06
CDX1P47902 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC2.17□□□□□ -2.06
CDX1P47902 MIR26A1-201ENST00000362205 77 ntBASIC2.17□□□□□ -2.06
CDX1P47902 RNU6-522P-201ENST00000364497 107 ntBASIC2.17□□□□□ -2.06
CDX1P47902 SNORA67.1-201ENST00000364749 141 ntBASIC2.17□□□□□ -2.06
CDX1P47902 SNORA25B-201ENST00000365507 128 ntBASIC2.17□□□□□ -2.06
CDX1P47902 RNU6-1329P-201ENST00000365664 107 ntBASIC2.17□□□□□ -2.06
CDX1P47902 MIR524-201ENST00000385242 87 ntBASIC2.17□□□□□ -2.06
CDX1P47902 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.17□□□□□ -2.06
CDX1P47902 SNORD115-47-201ENST00000391226 86 ntBASIC2.17□□□□□ -2.06
CDX1P47902 RNA5SP184-201ENST00000411071 108 ntBASIC2.17□□□□□ -2.06
CDX1P47902 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC2.17□□□□□ -2.06
CDX1P47902 AL590135.1-201ENST00000422215 156 ntBASIC2.17□□□□□ -2.06
CDX1P47902 AC019205.3-201ENST00000424573 156 ntBASIC2.17□□□□□ -2.06
CDX1P47902 AC112220.1-201ENST00000434628 355 ntBASIC2.17□□□□□ -2.06
CDX1P47902 AC016700.2-201ENST00000446011 156 ntBASIC2.17□□□□□ -2.06
CDX1P47902 AL031659.1-201ENST00000447075 539 ntBASIC2.17□□□□□ -2.06
CDX1P47902 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC2.17□□□□□ -2.06
CDX1P47902 SRIP1-201ENST00000489235 288 ntBASIC2.17□□□□□ -2.06
CDX1P47902 AC015911.1-201ENST00000495111 156 ntBASIC2.17□□□□□ -2.06
CDX1P47902 AC008628.2-201ENST00000502605 298 ntBASIC2.17□□□□□ -2.06
CDX1P47902 AC022447.4-201ENST00000504053 364 ntBASIC2.17□□□□□ -2.06
CDX1P47902 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC2.17□□□□□ -2.06
CDX1P47902 IGLV3-17-201ENST00000519099 244 ntBASIC2.17□□□□□ -2.06
CDX1P47902 AC023796.2-201ENST00000545410 451 ntTSL 3 BASIC2.17□□□□□ -2.06
CDX1P47902 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.17□□□□□ -2.06
CDX1P47902 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC2.17□□□□□ -2.06
CDX1P47902 ELOCP5-201ENST00000604924 333 ntBASIC2.17□□□□□ -2.06
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms