Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AL139022.2-201ENST00000606934 443 ntBASIC1.22□□□□□ -2.21
COL18A1P39060 AC099842.1-201ENST00000619919 596 ntBASIC1.22□□□□□ -2.21
COL18A1P39060 AC024940.5-201ENST00000622889 474 ntBASIC1.22□□□□□ -2.21
COL18A1P39060 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC1.22□□□□□ -2.21
COL18A1P39060 RNU6-942P-201ENST00000363002 107 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 RNU4-42P-201ENST00000364738 142 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 Y_RNA.302-201ENST00000364997 102 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 RNU6-83P-201ENST00000384568 112 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 RNU1-78P-201ENST00000391248 165 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 UBE2V1P10-201ENST00000414685 269 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 AC008267.5-201ENST00000424928 265 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 USP9YP18-201ENST00000425912 695 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 AL008629.1-201ENST00000438615 184 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 SPIN4-AS1-201ENST00000451979 426 ntTSL 2 BASIC1.21□□□□□ -2.22
COL18A1P39060 AC087884.1-201ENST00000469738 328 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC1.21□□□□□ -2.22
COL18A1P39060 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC1.21□□□□□ -2.22
COL18A1P39060 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.21□□□□□ -2.22
COL18A1P39060 AP005639.2-201ENST00000527592 928 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 MTND4P33-201ENST00000556706 766 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 AC084756.1-201ENST00000558237 606 ntTSL 5 BASIC1.21□□□□□ -2.22
COL18A1P39060 AL022154.1-201ENST00000604698 785 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC1.21□□□□□ -2.22
COL18A1P39060 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC1.21□□□□□ -2.22
COL18A1P39060 AL031667.3-201ENST00000620124 655 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 U1.36-201ENST00000620684 176 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 MTND4P16-201ENST00000466108 1367 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC1.21□□□□□ -2.22
COL18A1P39060 RGS13-204ENST00000543215 1518 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
COL18A1P39060 Y_RNA.18-201ENST00000362461 102 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 RNU6-487P-201ENST00000365430 104 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 RNU6-546P-201ENST00000383991 107 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 RNU6-611P-201ENST00000384276 104 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 RNU11-3P-201ENST00000391111 133 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 MTATP6P19-201ENST00000413797 659 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 AC016831.2-201ENST00000417179 352 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 AC106883.1-201ENST00000418805 562 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 MTND1P32-201ENST00000433043 938 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 AL356270.1-201ENST00000456587 522 ntTSL 3 BASIC1.21□□□□□ -2.22
COL18A1P39060 AC027575.1-201ENST00000481064 460 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 AC020699.1-201ENST00000505161 445 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 AC124290.1-202ENST00000523342 387 ntTSL 3 BASIC1.21□□□□□ -2.22
COL18A1P39060 ADI1P3-201ENST00000549509 470 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 AC020891.3-201ENST00000560011 363 ntTSL 3 BASIC1.21□□□□□ -2.22
COL18A1P39060 AC073410.2-201ENST00000603240 332 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 AP000860.1-201ENST00000605250 559 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 AC103810.9-201ENST00000606688 112 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 AC103810.8-201ENST00000607347 118 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 AC022513.1-201ENST00000624512 117 ntBASIC1.21□□□□□ -2.22
COL18A1P39060 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC1.21□□□□□ -2.22
COL18A1P39060 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.2□□□□□ -2.22
COL18A1P39060 ZNF29P-201ENST00000225587 168 ntBASIC1.2□□□□□ -2.22
COL18A1P39060 RNU1-23P-201ENST00000363361 144 ntBASIC1.2□□□□□ -2.22
COL18A1P39060 RNU6-622P-201ENST00000384272 103 ntBASIC1.2□□□□□ -2.22
COL18A1P39060 OR6C66P-201ENST00000414917 930 ntBASIC1.2□□□□□ -2.22
COL18A1P39060 VN1R36P-201ENST00000414936 291 ntBASIC1.2□□□□□ -2.22
COL18A1P39060 RPL21P90-201ENST00000415692 466 ntBASIC1.2□□□□□ -2.22
COL18A1P39060 AL158834.1-201ENST00000419441 466 ntTSL 5 BASIC1.2□□□□□ -2.22
COL18A1P39060 ATP6V0E1P3-201ENST00000420036 246 ntBASIC1.2□□□□□ -2.22
COL18A1P39060 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC1.2□□□□□ -2.22
COL18A1P39060 AL606517.1-201ENST00000446914 387 ntBASIC1.2□□□□□ -2.22
COL18A1P39060 AC006026.2-201ENST00000457376 180 ntBASIC1.2□□□□□ -2.22
COL18A1P39060 snoU109.2-201ENST00000459316 135 ntBASIC1.2□□□□□ -2.22
COL18A1P39060 MED28P2-201ENST00000475771 317 ntBASIC1.2□□□□□ -2.22
COL18A1P39060 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC1.2□□□□□ -2.22
COL18A1P39060 RNU7-51P-201ENST00000516560 62 ntBASIC1.2□□□□□ -2.22
COL18A1P39060 FAM92A-209ENST00000519679 538 ntTSL 4 BASIC1.2□□□□□ -2.22
COL18A1P39060 MTCO2P2-201ENST00000591258 225 ntBASIC1.2□□□□□ -2.22
COL18A1P39060 BNIP3P25-201ENST00000596023 559 ntBASIC1.2□□□□□ -2.22
COL18A1P39060 AL353778.1-201ENST00000603149 408 ntBASIC1.2□□□□□ -2.22
COL18A1P39060 AL138889.2-201ENST00000603883 242 ntBASIC1.2□□□□□ -2.22
COL18A1P39060 AC105148.1-201ENST00000604961 409 ntBASIC1.2□□□□□ -2.22
COL18A1P39060 AC013244.3-201ENST00000605614 388 ntBASIC1.2□□□□□ -2.22
COL18A1P39060 AL139418.1-201ENST00000613613 177 ntBASIC1.2□□□□□ -2.22
COL18A1P39060 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC1.2□□□□□ -2.22
COL18A1P39060 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.2□□□□□ -2.22
COL18A1P39060 RNU6-1200P-201ENST00000384162 107 ntBASIC1.19□□□□□ -2.22
COL18A1P39060 SNORD115.1-201ENST00000391109 76 ntBASIC1.19□□□□□ -2.22
COL18A1P39060 MIR934-201ENST00000401241 83 ntBASIC1.19□□□□□ -2.22
COL18A1P39060 AL365434.1-201ENST00000412362 380 ntTSL 3 BASIC1.19□□□□□ -2.22
COL18A1P39060 AC004941.2-201ENST00000427009 228 ntBASIC1.19□□□□□ -2.22
COL18A1P39060 CBX3P6-201ENST00000430257 527 ntBASIC1.19□□□□□ -2.22
COL18A1P39060 AP001043.2-201ENST00000434589 288 ntTSL 3 BASIC1.19□□□□□ -2.22
COL18A1P39060 RPS29P28-201ENST00000446439 141 ntBASIC1.19□□□□□ -2.22
COL18A1P39060 WDR78-207ENST00000488333 613 ntTSL 3 BASIC1.19□□□□□ -2.22
COL18A1P39060 HMGB1P30-201ENST00000492455 606 ntBASIC1.19□□□□□ -2.22
COL18A1P39060 MTATP6P9-201ENST00000515039 680 ntBASIC1.19□□□□□ -2.22
COL18A1P39060 RNA5SP395-201ENST00000516567 118 ntBASIC1.19□□□□□ -2.22
COL18A1P39060 SNORA44.1-201ENST00000517031 108 ntBASIC1.19□□□□□ -2.22
COL18A1P39060 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC1.19□□□□□ -2.22
COL18A1P39060 MIR4713-201ENST00000582691 75 ntBASIC1.19□□□□□ -2.22
COL18A1P39060 AC093788.1-201ENST00000609356 927 ntBASIC1.19□□□□□ -2.22
COL18A1P39060 AL607023.1-201ENST00000620045 248 ntBASIC1.19□□□□□ -2.22
COL18A1P39060 AC093648.1-201ENST00000623546 606 ntBASIC1.19□□□□□ -2.22
COL18A1P39060 LRRIQ1-202ENST00000393217 5394 ntAPPRIS P1 TSL 1 (best) BASIC1.19□□□□□ -2.22
COL18A1P39060 FARSBP1-201ENST00000435808 1778 ntBASIC1.19□□□□□ -2.22
COL18A1P39060 RNU6-1210P-201ENST00000363775 107 ntBASIC1.19□□□□□ -2.22
COL18A1P39060 RNY4P16-201ENST00000364768 94 ntBASIC1.19□□□□□ -2.22
COL18A1P39060 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC1.19□□□□□ -2.22
COL18A1P39060 CBX3P9-201ENST00000402326 552 ntBASIC1.19□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 115.9 ms