Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MIR4474-201ENST00000579189 78 ntBASIC3.41□□□□□ -1.86
MSX2P35548 AC053481.4-201ENST00000583164 216 ntBASIC3.41□□□□□ -1.86
MSX2P35548 Y_RNA.772-201ENST00000606692 102 ntBASIC3.41□□□□□ -1.86
MSX2P35548 MIR6500-201ENST00000622700 86 ntBASIC3.41□□□□□ -1.86
MSX2P35548 U6.99-201ENST00000637524 83 ntBASIC3.41□□□□□ -1.86
MSX2P35548 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.41□□□□□ -1.86
MSX2P35548 DPP10-205ENST00000410059 6278 ntAPPRIS ALT2 TSL 1 (best) BASIC3.41□□□□□ -1.86
MSX2P35548 AC233981.2-201ENST00000611524 1614 ntBASIC3.41□□□□□ -1.86
MSX2P35548 PRKACB-201ENST00000370680 1914 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
MSX2P35548 PSG1-205ENST00000595124 1692 ntTSL 2 BASIC3.4□□□□□ -1.86
MSX2P35548 IL6ST-205ENST00000381294 2574 ntTSL 1 (best) BASIC3.4□□□□□ -1.86
MSX2P35548 Y_RNA.54-201ENST00000362766 105 ntBASIC3.4□□□□□ -1.87
MSX2P35548 Y_RNA.150-201ENST00000363562 102 ntBASIC3.4□□□□□ -1.87
MSX2P35548 Y_RNA.269-201ENST00000364685 89 ntBASIC3.4□□□□□ -1.87
MSX2P35548 RNU6-102P-201ENST00000384485 104 ntBASIC3.4□□□□□ -1.87
MSX2P35548 MIR518D-201ENST00000385014 87 ntBASIC3.4□□□□□ -1.87
MSX2P35548 MIR591-201ENST00000385290 95 ntBASIC3.4□□□□□ -1.87
MSX2P35548 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
MSX2P35548 TRAJ17-201ENST00000390520 63 ntAPPRIS P1 BASIC3.4□□□□□ -1.87
MSX2P35548 SNORD78.2-201ENST00000391076 69 ntBASIC3.4□□□□□ -1.87
MSX2P35548 U3.37-201ENST00000408528 213 ntBASIC3.4□□□□□ -1.87
MSX2P35548 RNU2-20P-201ENST00000410425 191 ntBASIC3.4□□□□□ -1.87
MSX2P35548 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC3.4□□□□□ -1.87
MSX2P35548 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC3.4□□□□□ -1.87
MSX2P35548 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC3.4□□□□□ -1.87
MSX2P35548 LINC01757-201ENST00000435552 480 ntTSL 2 BASIC3.4□□□□□ -1.87
MSX2P35548 RPL23AP75-201ENST00000491601 451 ntBASIC3.4□□□□□ -1.87
MSX2P35548 RNU6-496P-201ENST00000516145 99 ntBASIC3.4□□□□□ -1.87
MSX2P35548 RNA5SP164-201ENST00000516533 110 ntBASIC3.4□□□□□ -1.87
MSX2P35548 RNU6-1183P-201ENST00000517054 60 ntBASIC3.4□□□□□ -1.87
MSX2P35548 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.4□□□□□ -1.87
MSX2P35548 AC023824.2-201ENST00000566185 400 ntBASIC3.4□□□□□ -1.87
MSX2P35548 AC099793.1-201ENST00000567538 285 ntTSL 3 BASIC3.4□□□□□ -1.87
MSX2P35548 MIR3186-201ENST00000577404 85 ntBASIC3.4□□□□□ -1.87
MSX2P35548 MIR4643-201ENST00000577473 78 ntBASIC3.4□□□□□ -1.87
MSX2P35548 MIR4782-201ENST00000577987 79 ntBASIC3.4□□□□□ -1.87
MSX2P35548 MIR4659A-201ENST00000580269 81 ntBASIC3.4□□□□□ -1.87
MSX2P35548 AC024153.1-201ENST00000603103 365 ntBASIC3.4□□□□□ -1.87
MSX2P35548 IGKV1OR2-6-201ENST00000603485 277 ntBASIC3.4□□□□□ -1.87
MSX2P35548 AL591034.3-201ENST00000605511 685 ntBASIC3.4□□□□□ -1.87
MSX2P35548 RPL23AP88-201ENST00000605759 454 ntBASIC3.4□□□□□ -1.87
MSX2P35548 MIR663AHG-231ENST00000609044 590 ntTSL 5 BASIC3.4□□□□□ -1.87
MSX2P35548 AC092628.2-201ENST00000622492 339 ntBASIC3.4□□□□□ -1.87
MSX2P35548 U2.21-201ENST00000637295 81 ntBASIC3.4□□□□□ -1.87
MSX2P35548 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC3.4□□□□□ -1.87
MSX2P35548 AC241585.2-209ENST00000638217 143 ntBASIC3.4□□□□□ -1.87
MSX2P35548 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC3.4□□□□□ -1.87
MSX2P35548 ANO3-204ENST00000531568 3117 ntAPPRIS ALT2 TSL 2 BASIC3.39□□□□□ -1.87
MSX2P35548 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
MSX2P35548 PWAR6-201ENST00000552334 4618 ntBASIC3.39□□□□□ -1.87
MSX2P35548 CRISP3-204ENST00000433368 2205 ntAPPRIS ALT2 TSL 5 BASIC3.39□□□□□ -1.87
MSX2P35548 THEMIS-201ENST00000368248 3866 ntAPPRIS P3 TSL 1 (best) BASIC3.39□□□□□ -1.87
MSX2P35548 SPRR2C-201ENST00000290702 219 ntBASIC3.39□□□□□ -1.87
MSX2P35548 RNU6-942P-201ENST00000363002 107 ntBASIC3.39□□□□□ -1.87
MSX2P35548 RNU6-17P-201ENST00000384245 107 ntBASIC3.39□□□□□ -1.87
MSX2P35548 RNU6-937P-201ENST00000384325 106 ntBASIC3.39□□□□□ -1.87
MSX2P35548 RNU6-18P-201ENST00000384527 107 ntBASIC3.39□□□□□ -1.87
MSX2P35548 MIR325-201ENST00000385260 98 ntBASIC3.39□□□□□ -1.87
MSX2P35548 C1orf195-201ENST00000424792 255 ntTSL 2 BASIC3.39□□□□□ -1.87
MSX2P35548 AL591043.1-201ENST00000432461 424 ntBASIC3.39□□□□□ -1.87
MSX2P35548 AC009296.1-201ENST00000443146 155 ntBASIC3.39□□□□□ -1.87
MSX2P35548 RPS26P21-201ENST00000475397 348 ntBASIC3.39□□□□□ -1.87
MSX2P35548 RNU6-1282P-201ENST00000516735 96 ntBASIC3.39□□□□□ -1.87
MSX2P35548 AL137100.2-201ENST00000555786 315 ntBASIC3.39□□□□□ -1.87
MSX2P35548 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.39□□□□□ -1.87
MSX2P35548 AC011476.5-201ENST00000615594 130 ntBASIC3.39□□□□□ -1.87
MSX2P35548 AC097372.5-201ENST00000623665 376 ntBASIC3.39□□□□□ -1.87
MSX2P35548 RNA5SP196-201ENST00000625967 102 ntBASIC3.39□□□□□ -1.87
MSX2P35548 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.39□□□□□ -1.87
MSX2P35548 AC009541.1-201ENST00000438279 2662 ntBASIC3.39□□□□□ -1.87
MSX2P35548 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.39□□□□□ -1.87
MSX2P35548 ZNF483-201ENST00000309235 3655 ntAPPRIS P1 TSL 1 (best) BASIC3.39□□□□□ -1.87
MSX2P35548 RGPD3-202ENST00000409886 5594 ntAPPRIS P2 TSL 1 (best) BASIC3.38□□□□□ -1.87
MSX2P35548 C5orf51-201ENST00000381647 5241 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
MSX2P35548 CUL3-203ENST00000409096 2701 ntTSL 1 (best) BASIC3.38□□□□□ -1.87
MSX2P35548 TRIM36-201ENST00000282369 4050 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
MSX2P35548 PPP1R12A-204ENST00000546369 2977 ntTSL 2 BASIC3.38□□□□□ -1.87
MSX2P35548 EPS15-202ENST00000371730 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC3.38□□□□□ -1.87
MSX2P35548 FTLP6-201ENST00000355274 422 ntBASIC3.38□□□□□ -1.87
MSX2P35548 SNORD113-8-201ENST00000363497 74 ntBASIC3.38□□□□□ -1.87
MSX2P35548 RNU6-886P-201ENST00000384319 105 ntBASIC3.38□□□□□ -1.87
MSX2P35548 RNU6-140P-201ENST00000384566 108 ntBASIC3.38□□□□□ -1.87
MSX2P35548 RNA5SP213-201ENST00000391031 106 ntBASIC3.38□□□□□ -1.87
MSX2P35548 PCNPP3-201ENST00000393579 471 ntBASIC3.38□□□□□ -1.87
MSX2P35548 DEFB130A-201ENST00000400079 240 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
MSX2P35548 Y_RNA.602-201ENST00000410535 92 ntBASIC3.38□□□□□ -1.87
MSX2P35548 AC017074.1-201ENST00000424612 561 ntTSL 3 BASIC3.38□□□□□ -1.87
MSX2P35548 HMGN2P20-201ENST00000437531 273 ntBASIC3.38□□□□□ -1.87
MSX2P35548 DEFB130B-201ENST00000437818 240 ntAPPRIS P1 TSL 1 (best) BASIC3.38□□□□□ -1.87
MSX2P35548 AL031659.1-201ENST00000447075 539 ntBASIC3.38□□□□□ -1.87
MSX2P35548 HMGB3P8-201ENST00000449709 577 ntBASIC3.38□□□□□ -1.87
MSX2P35548 RPL30P14-201ENST00000482744 348 ntBASIC3.38□□□□□ -1.87
MSX2P35548 RPL30P1-201ENST00000488676 339 ntBASIC3.38□□□□□ -1.87
MSX2P35548 ABCA17P-206ENST00000512848 467 ntTSL 2 BASIC3.38□□□□□ -1.87
MSX2P35548 AC022868.1-201ENST00000517767 391 ntBASIC3.38□□□□□ -1.87
MSX2P35548 AC023632.4-201ENST00000517783 191 ntBASIC3.38□□□□□ -1.87
MSX2P35548 HSPE1P7-201ENST00000604681 321 ntBASIC3.38□□□□□ -1.87
MSX2P35548 AC005696.2-201ENST00000610120 626 ntTSL 3 BASIC3.38□□□□□ -1.87
MSX2P35548 U2.14-201ENST00000615943 113 ntBASIC3.38□□□□□ -1.87
MSX2P35548 AP000553.6-201ENST00000641242 118 ntBASIC3.38□□□□□ -1.87
Retrieved 100 of 98,524 protein–RNA pairs in 122.3 ms