Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 AC116337.1-201ENST00000509680 687 ntBASIC3.05□□□□□ -1.92
CIITAP33076 AC096745.1-201ENST00000509945 370 ntBASIC3.05□□□□□ -1.92
CIITAP33076 RPL39P5-202ENST00000512505 151 ntBASIC3.05□□□□□ -1.92
CIITAP33076 AC069113.1-201ENST00000517763 267 ntBASIC3.05□□□□□ -1.92
CIITAP33076 AC068880.3-201ENST00000519185 179 ntTSL 5 BASIC3.05□□□□□ -1.92
CIITAP33076 AC020661.2-201ENST00000560114 134 ntBASIC3.05□□□□□ -1.92
CIITAP33076 AC020895.1-201ENST00000595362 272 ntBASIC3.05□□□□□ -1.92
CIITAP33076 RNU6ATAC35P-201ENST00000609276 444 ntBASIC3.05□□□□□ -1.92
CIITAP33076 MIR6128-201ENST00000615528 109 ntBASIC3.05□□□□□ -1.92
CIITAP33076 HOTAIRM1_5.1-201ENST00000619311 145 ntBASIC3.05□□□□□ -1.92
CIITAP33076 MINDY3-202ENST00000378036 2452 ntTSL 2 BASIC3.05□□□□□ -1.92
CIITAP33076 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC3.05□□□□□ -1.92
CIITAP33076 AC108206.1-201ENST00000570186 4159 ntBASIC3.04□□□□□ -1.92
CIITAP33076 OR2J3-203ENST00000641960 3342 ntAPPRIS P1 BASIC3.04□□□□□ -1.92
CIITAP33076 RNU6-474P-201ENST00000384243 107 ntBASIC3.04□□□□□ -1.92
CIITAP33076 MIR518D-201ENST00000385014 87 ntBASIC3.04□□□□□ -1.92
CIITAP33076 AC007560.1-201ENST00000426912 237 ntBASIC3.04□□□□□ -1.92
CIITAP33076 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC3.04□□□□□ -1.92
CIITAP33076 AL353148.1-201ENST00000449761 463 ntTSL 2 BASIC3.04□□□□□ -1.92
CIITAP33076 AL365295.1-201ENST00000454942 514 ntTSL 5 BASIC3.04□□□□□ -1.92
CIITAP33076 Y_RNA.639-201ENST00000458981 102 ntBASIC3.04□□□□□ -1.92
CIITAP33076 AC128713.1-201ENST00000471495 306 ntBASIC3.04□□□□□ -1.92
CIITAP33076 AC113155.1-201ENST00000511141 769 ntBASIC3.04□□□□□ -1.92
CIITAP33076 Y_RNA.670-201ENST00000516255 105 ntBASIC3.04□□□□□ -1.92
CIITAP33076 RNU6-1183P-201ENST00000517054 60 ntBASIC3.04□□□□□ -1.92
CIITAP33076 AC092747.1-202ENST00000540595 380 ntTSL 5 BASIC3.04□□□□□ -1.92
CIITAP33076 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC3.04□□□□□ -1.92
CIITAP33076 OR1M4P-201ENST00000589199 287 ntBASIC3.04□□□□□ -1.92
CIITAP33076 AP000654.2-201ENST00000605633 586 ntBASIC3.04□□□□□ -1.92
CIITAP33076 AL161423.1-201ENST00000613700 262 ntBASIC3.04□□□□□ -1.92
CIITAP33076 AC010378.1-201ENST00000619270 362 ntBASIC3.04□□□□□ -1.92
CIITAP33076 AC002064.3-201ENST00000623448 346 ntBASIC3.04□□□□□ -1.92
CIITAP33076 HERC4-201ENST00000277817 4371 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
CIITAP33076 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.03□□□□□ -1.92
CIITAP33076 SNORD62.1-201ENST00000362541 86 ntBASIC3.03□□□□□ -1.92
CIITAP33076 Y_RNA.151-201ENST00000363566 112 ntBASIC3.03□□□□□ -1.92
CIITAP33076 RNU6-884P-201ENST00000363889 107 ntBASIC3.03□□□□□ -1.92
CIITAP33076 U8.9-201ENST00000365667 134 ntBASIC3.03□□□□□ -1.92
CIITAP33076 Y_RNA.404-201ENST00000383978 102 ntBASIC3.03□□□□□ -1.92
CIITAP33076 RNU6-310P-201ENST00000384655 107 ntBASIC3.03□□□□□ -1.92
CIITAP33076 RPL21P75-201ENST00000396599 483 ntBASIC3.03□□□□□ -1.92
CIITAP33076 RPL21P28-201ENST00000401418 483 ntBASIC3.03□□□□□ -1.92
CIITAP33076 MTCYBP4-201ENST00000401524 249 ntBASIC3.03□□□□□ -1.92
CIITAP33076 RNU2-52P-201ENST00000410680 190 ntBASIC3.03□□□□□ -1.92
CIITAP33076 Y_RNA.646-201ENST00000410980 101 ntBASIC3.03□□□□□ -1.92
CIITAP33076 MTCO2P12-201ENST00000427426 682 ntBASIC3.03□□□□□ -1.92
CIITAP33076 AC007566.1-201ENST00000427458 643 ntTSL 5 BASIC3.03□□□□□ -1.92
CIITAP33076 KCNMA1-AS2-201ENST00000428936 427 ntTSL 3 BASIC3.03□□□□□ -1.92
CIITAP33076 AC005534.2-201ENST00000431047 433 ntBASIC3.03□□□□□ -1.92
CIITAP33076 AC092573.2-202ENST00000437243 336 ntTSL 3 BASIC3.03□□□□□ -1.92
CIITAP33076 AC098831.1-201ENST00000440661 216 ntBASIC3.03□□□□□ -1.92
CIITAP33076 AC013727.2-201ENST00000447761 545 ntTSL 4 BASIC3.03□□□□□ -1.92
CIITAP33076 AL109933.2-201ENST00000452651 260 ntBASIC3.03□□□□□ -1.92
CIITAP33076 ELOCP24-201ENST00000456370 334 ntBASIC3.03□□□□□ -1.92
CIITAP33076 SNORD5.1-201ENST00000458800 75 ntBASIC3.03□□□□□ -1.92
CIITAP33076 RPL21P39-201ENST00000463605 483 ntBASIC3.03□□□□□ -1.92
CIITAP33076 RPL23AP45-201ENST00000476406 468 ntBASIC3.03□□□□□ -1.92
CIITAP33076 AC027575.1-201ENST00000481064 460 ntBASIC3.03□□□□□ -1.92
CIITAP33076 AC103975.1-201ENST00000482506 483 ntBASIC3.03□□□□□ -1.92
CIITAP33076 AC087190.1-201ENST00000484462 480 ntBASIC3.03□□□□□ -1.92
CIITAP33076 RPS29P20-201ENST00000489592 171 ntBASIC3.03□□□□□ -1.92
CIITAP33076 AC093591.1-201ENST00000491435 481 ntBASIC3.03□□□□□ -1.92
CIITAP33076 RPL21P16-201ENST00000495531 483 ntBASIC3.03□□□□□ -1.92
CIITAP33076 AL359273.1-202ENST00000505585 905 ntTSL 1 (best) BASIC3.03□□□□□ -1.92
CIITAP33076 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC3.03□□□□□ -1.92
CIITAP33076 RNA5SP282-201ENST00000516355 108 ntBASIC3.03□□□□□ -1.92
CIITAP33076 SCARNA15.1-201ENST00000516384 125 ntBASIC3.03□□□□□ -1.92
CIITAP33076 RNU6-1016P-201ENST00000516689 94 ntBASIC3.03□□□□□ -1.92
CIITAP33076 AC127894.1-201ENST00000548266 851 ntTSL 3 BASIC3.03□□□□□ -1.92
CIITAP33076 AC022035.1-201ENST00000579923 302 ntTSL 2 BASIC3.03□□□□□ -1.92
CIITAP33076 MIR3162-201ENST00000581818 82 ntBASIC3.03□□□□□ -1.92
CIITAP33076 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC3.03□□□□□ -1.92
CIITAP33076 AC022432.1-201ENST00000595739 310 ntBASIC3.03□□□□□ -1.92
CIITAP33076 AC008739.2-201ENST00000597006 317 ntBASIC3.03□□□□□ -1.92
CIITAP33076 AL355877.2-201ENST00000603670 358 ntBASIC3.03□□□□□ -1.92
CIITAP33076 AL645944.1-201ENST00000603857 493 ntBASIC3.03□□□□□ -1.92
CIITAP33076 AC018462.2-201ENST00000605375 395 ntBASIC3.03□□□□□ -1.92
CIITAP33076 DLEU2_5.1-201ENST00000615567 84 ntBASIC3.03□□□□□ -1.92
CIITAP33076 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.03□□□□□ -1.92
CIITAP33076 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC3.03□□□□□ -1.92
CIITAP33076 KPNA2P1-201ENST00000458289 1591 ntBASIC3.03□□□□□ -1.92
CIITAP33076 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CIITAP33076 ANKRD18EP-201ENST00000405487 2632 ntBASIC3.02□□□□□ -1.93
CIITAP33076 LINC00836-202ENST00000626230 1640 ntTSL 2 BASIC3.02□□□□□ -1.93
CIITAP33076 RNU6-859P-201ENST00000362728 107 ntBASIC3.02□□□□□ -1.93
CIITAP33076 RNU6-593P-201ENST00000364716 112 ntBASIC3.02□□□□□ -1.93
CIITAP33076 Y_RNA.326-201ENST00000365176 113 ntBASIC3.02□□□□□ -1.93
CIITAP33076 RNU1-73P-201ENST00000383971 164 ntBASIC3.02□□□□□ -1.93
CIITAP33076 RNU6-306P-201ENST00000384617 107 ntBASIC3.02□□□□□ -1.93
CIITAP33076 MIR1302-11-201ENST00000408051 138 ntBASIC3.02□□□□□ -1.93
CIITAP33076 MIR1302-9-201ENST00000408365 138 ntBASIC3.02□□□□□ -1.93
CIITAP33076 MIR1302-10-201ENST00000408734 138 ntBASIC3.02□□□□□ -1.93
CIITAP33076 AC096649.2-201ENST00000416186 393 ntBASIC3.02□□□□□ -1.93
CIITAP33076 MTCO2P27-201ENST00000420740 428 ntBASIC3.02□□□□□ -1.93
CIITAP33076 GYPB-201ENST00000429670 239 ntTSL 1 (best) BASIC3.02□□□□□ -1.93
CIITAP33076 USP9YP30-201ENST00000430729 455 ntBASIC3.02□□□□□ -1.93
CIITAP33076 HIGD1AP2-201ENST00000446367 280 ntBASIC3.02□□□□□ -1.93
CIITAP33076 MTATP6P7-201ENST00000453315 681 ntBASIC3.02□□□□□ -1.93
CIITAP33076 snoU109.2-201ENST00000459316 135 ntBASIC3.02□□□□□ -1.93
CIITAP33076 RNU4ATAC17P-201ENST00000517272 120 ntBASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 99.8 ms