Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AL118558.2-201ENST00000556294 238 ntBASIC1.96□□□□□ -2.1
SDC1P18827 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC1.96□□□□□ -2.1
SDC1P18827 AC002984.1-201ENST00000591692 448 ntBASIC1.96□□□□□ -2.1
SDC1P18827 AL355297.2-201ENST00000604792 129 ntBASIC1.96□□□□□ -2.1
SDC1P18827 AC092954.2-201ENST00000609103 430 ntBASIC1.96□□□□□ -2.1
SDC1P18827 AL159153.1-201ENST00000619688 317 ntBASIC1.96□□□□□ -2.1
SDC1P18827 MIR6873-201ENST00000622788 63 ntBASIC1.96□□□□□ -2.1
SDC1P18827 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC1.96□□□□□ -2.1
SDC1P18827 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
SDC1P18827 RNU6-336P-201ENST00000364891 107 ntBASIC1.95□□□□□ -2.1
SDC1P18827 RNA5SP219-201ENST00000390940 113 ntBASIC1.95□□□□□ -2.1
SDC1P18827 SNORD37.1-201ENST00000390968 65 ntBASIC1.95□□□□□ -2.1
SDC1P18827 RPL17P50-201ENST00000396131 546 ntBASIC1.95□□□□□ -2.1
SDC1P18827 AL591034.2-201ENST00000402839 359 ntBASIC1.95□□□□□ -2.1
SDC1P18827 MTCO3P41-201ENST00000414801 328 ntBASIC1.95□□□□□ -2.1
SDC1P18827 AL117339.3-201ENST00000418733 162 ntBASIC1.95□□□□□ -2.1
SDC1P18827 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC1.95□□□□□ -2.1
SDC1P18827 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC1.95□□□□□ -2.1
SDC1P18827 AL121601.2-201ENST00000438019 707 ntBASIC1.95□□□□□ -2.1
SDC1P18827 AL161788.1-201ENST00000441805 169 ntBASIC1.95□□□□□ -2.1
SDC1P18827 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC1.95□□□□□ -2.1
SDC1P18827 MTND1P1-201ENST00000445453 368 ntBASIC1.95□□□□□ -2.1
SDC1P18827 PSPHP1-201ENST00000450062 261 ntBASIC1.95□□□□□ -2.1
SDC1P18827 AC013470.1-201ENST00000453438 462 ntBASIC1.95□□□□□ -2.1
SDC1P18827 RNU6-261P-201ENST00000459506 102 ntBASIC1.95□□□□□ -2.1
SDC1P18827 MTCO3P38-201ENST00000468910 766 ntBASIC1.95□□□□□ -2.1
SDC1P18827 CKS1BP2-201ENST00000497342 240 ntBASIC1.95□□□□□ -2.1
SDC1P18827 AC019235.1-201ENST00000503847 207 ntBASIC1.95□□□□□ -2.1
SDC1P18827 NAF1-205ENST00000509434 385 ntTSL 3 BASIC1.95□□□□□ -2.1
SDC1P18827 AC009646.1-201ENST00000510455 318 ntBASIC1.95□□□□□ -2.1
SDC1P18827 RNA5SP401-201ENST00000515920 127 ntBASIC1.95□□□□□ -2.1
SDC1P18827 RNU6-377P-201ENST00000515965 102 ntBASIC1.95□□□□□ -2.1
SDC1P18827 RNU6-1038P-201ENST00000516516 104 ntBASIC1.95□□□□□ -2.1
SDC1P18827 Y_RNA.693-201ENST00000516641 110 ntBASIC1.95□□□□□ -2.1
SDC1P18827 OR11H5P-201ENST00000554039 926 ntBASIC1.95□□□□□ -2.1
SDC1P18827 AC018554.1-202ENST00000565133 444 ntTSL 3 BASIC1.95□□□□□ -2.1
SDC1P18827 U4atac.1-201ENST00000618345 95 ntBASIC1.95□□□□□ -2.1
SDC1P18827 AC002543.1-201ENST00000299783 1954 ntBASIC1.94□□□□□ -2.1
SDC1P18827 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
SDC1P18827 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
SDC1P18827 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC1.94□□□□□ -2.1
SDC1P18827 RNU6-655P-201ENST00000362858 107 ntBASIC1.94□□□□□ -2.1
SDC1P18827 RNU1-23P-201ENST00000363361 144 ntBASIC1.94□□□□□ -2.1
SDC1P18827 RNU6-1210P-201ENST00000363775 107 ntBASIC1.94□□□□□ -2.1
SDC1P18827 SNORA3A-201ENST00000364113 130 ntBASIC1.94□□□□□ -2.1
SDC1P18827 RNA5SP240-201ENST00000365355 128 ntBASIC1.94□□□□□ -2.1
SDC1P18827 RNU4-52P-201ENST00000384209 138 ntBASIC1.94□□□□□ -2.1
SDC1P18827 Y_RNA.481-201ENST00000384373 102 ntBASIC1.94□□□□□ -2.1
SDC1P18827 RNU1-148P-201ENST00000384472 162 ntBASIC1.94□□□□□ -2.1
SDC1P18827 MIR544A-201ENST00000384855 91 ntBASIC1.94□□□□□ -2.1
SDC1P18827 AL023284.1-201ENST00000403956 276 ntBASIC1.94□□□□□ -2.1
SDC1P18827 RNU6-648P-201ENST00000410190 107 ntBASIC1.94□□□□□ -2.1
SDC1P18827 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC1.94□□□□□ -2.1
SDC1P18827 HMGN2P38-201ENST00000423806 265 ntBASIC1.94□□□□□ -2.1
SDC1P18827 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC1.94□□□□□ -2.1
SDC1P18827 AC243964.1-201ENST00000441814 261 ntBASIC1.94□□□□□ -2.1
SDC1P18827 AL592309.2-201ENST00000444647 607 ntTSL 5 BASIC1.94□□□□□ -2.1
SDC1P18827 AL031274.1-201ENST00000450334 232 ntBASIC1.94□□□□□ -2.1
SDC1P18827 CYP2C59P-201ENST00000457790 269 ntBASIC1.94□□□□□ -2.1
SDC1P18827 AL354824.2-201ENST00000458004 446 ntTSL 3 BASIC1.94□□□□□ -2.1
SDC1P18827 SNORA48.11-201ENST00000517015 89 ntBASIC1.94□□□□□ -2.1
SDC1P18827 AC109479.2-201ENST00000517842 174 ntBASIC1.94□□□□□ -2.1
SDC1P18827 IGKV3-31-201ENST00000523109 329 ntBASIC1.94□□□□□ -2.1
SDC1P18827 COPS8P3-201ENST00000526024 482 ntBASIC1.94□□□□□ -2.1
SDC1P18827 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.94□□□□□ -2.1
SDC1P18827 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC1.94□□□□□ -2.1
SDC1P18827 IMMP1LP2-201ENST00000552954 492 ntBASIC1.94□□□□□ -2.1
SDC1P18827 AL512360.1-201ENST00000555346 234 ntBASIC1.94□□□□□ -2.1
SDC1P18827 AC245505.1-201ENST00000556398 224 ntBASIC1.94□□□□□ -2.1
SDC1P18827 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.94□□□□□ -2.1
SDC1P18827 AL138976.2-201ENST00000563989 694 ntBASIC1.94□□□□□ -2.1
SDC1P18827 RPS3AP23-202ENST00000574601 686 ntBASIC1.94□□□□□ -2.1
SDC1P18827 SNORD53-201ENST00000579969 78 ntBASIC1.94□□□□□ -2.1
SDC1P18827 VN1R80P-201ENST00000597126 338 ntBASIC1.94□□□□□ -2.1
SDC1P18827 Z82243.1-201ENST00000609432 473 ntBASIC1.94□□□□□ -2.1
SDC1P18827 AC087241.4-201ENST00000612441 480 ntBASIC1.94□□□□□ -2.1
SDC1P18827 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC1.94□□□□□ -2.1
SDC1P18827 CUL2-206ENST00000421317 2376 ntTSL 2 BASIC1.94□□□□□ -2.1
SDC1P18827 MTND4P1-201ENST00000457501 1466 ntBASIC1.94□□□□□ -2.1
SDC1P18827 ATP8A2P2-201ENST00000437678 1568 ntBASIC1.93□□□□□ -2.1
SDC1P18827 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC1.93□□□□□ -2.1
SDC1P18827 RNU4-82P-201ENST00000362443 140 ntBASIC1.93□□□□□ -2.1
SDC1P18827 RNU6-623P-201ENST00000363143 105 ntBASIC1.93□□□□□ -2.1
SDC1P18827 Y_RNA.372-201ENST00000365599 102 ntBASIC1.93□□□□□ -2.1
SDC1P18827 RNU6-38P-201ENST00000384085 107 ntBASIC1.93□□□□□ -2.1
SDC1P18827 U3.40-201ENST00000408706 208 ntBASIC1.93□□□□□ -2.1
SDC1P18827 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC1.93□□□□□ -2.1
SDC1P18827 AC027124.2-201ENST00000428249 105 ntBASIC1.93□□□□□ -2.1
SDC1P18827 AC018816.1-203ENST00000441894 338 ntTSL 3 BASIC1.93□□□□□ -2.1
SDC1P18827 RPL39P29-201ENST00000447779 157 ntBASIC1.93□□□□□ -2.1
SDC1P18827 TPTE2P5-203ENST00000458118 728 ntBASIC1.93□□□□□ -2.1
SDC1P18827 RNU6-333P-201ENST00000459117 107 ntBASIC1.93□□□□□ -2.1
SDC1P18827 AC079140.5-201ENST00000507882 310 ntBASIC1.93□□□□□ -2.1
SDC1P18827 AC069113.1-201ENST00000517763 267 ntBASIC1.93□□□□□ -2.1
SDC1P18827 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC1.93□□□□□ -2.1
SDC1P18827 AC139497.1-201ENST00000524042 501 ntTSL 5 BASIC1.93□□□□□ -2.1
SDC1P18827 CENPUP1-201ENST00000526649 1202 ntBASIC1.93□□□□□ -2.1
SDC1P18827 AK6P1-201ENST00000540219 478 ntBASIC1.93□□□□□ -2.1
SDC1P18827 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.93□□□□□ -2.1
SDC1P18827 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC1.93□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 97.2 ms