Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC3.24□□□□□ -1.89
HMGB1P09429 IGLV3-17-201ENST00000519099 244 ntBASIC3.24□□□□□ -1.89
HMGB1P09429 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC3.24□□□□□ -1.89
HMGB1P09429 AC080013.6-201ENST00000606185 215 ntBASIC3.24□□□□□ -1.89
HMGB1P09429 AC004492.1-201ENST00000607036 742 ntBASIC3.24□□□□□ -1.89
HMGB1P09429 AC092807.2-201ENST00000609367 243 ntBASIC3.24□□□□□ -1.89
HMGB1P09429 IDE-201ENST00000265986 5877 ntAPPRIS P1 TSL 1 (best) BASIC3.24□□□□□ -1.89
HMGB1P09429 AC092268.1-201ENST00000342691 405 ntBASIC3.23□□□□□ -1.89
HMGB1P09429 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC3.23□□□□□ -1.89
HMGB1P09429 SNORA18.3-201ENST00000384122 132 ntBASIC3.23□□□□□ -1.89
HMGB1P09429 MIR491-201ENST00000384877 84 ntBASIC3.23□□□□□ -1.89
HMGB1P09429 RNU6-780P-201ENST00000391030 104 ntBASIC3.23□□□□□ -1.89
HMGB1P09429 AL138827.1-201ENST00000402666 306 ntBASIC3.23□□□□□ -1.89
HMGB1P09429 RNA5SP21-201ENST00000410917 96 ntBASIC3.23□□□□□ -1.89
HMGB1P09429 SRIP3-201ENST00000413200 219 ntBASIC3.23□□□□□ -1.89
HMGB1P09429 BX510359.4-201ENST00000423750 193 ntBASIC3.23□□□□□ -1.89
HMGB1P09429 AC096920.1-201ENST00000423991 241 ntBASIC3.23□□□□□ -1.89
HMGB1P09429 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.23□□□□□ -1.89
HMGB1P09429 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC3.23□□□□□ -1.89
HMGB1P09429 IPO7P1-201ENST00000442031 636 ntBASIC3.23□□□□□ -1.89
HMGB1P09429 AL135938.1-201ENST00000443141 297 ntBASIC3.23□□□□□ -1.89
HMGB1P09429 PMCHL2-203ENST00000457791 237 ntBASIC3.23□□□□□ -1.89
HMGB1P09429 Y_RNA.654-201ENST00000497848 106 ntBASIC3.23□□□□□ -1.89
HMGB1P09429 AC093259.1-201ENST00000509755 300 ntBASIC3.23□□□□□ -1.89
HMGB1P09429 SNORA74D-201ENST00000516404 141 ntBASIC3.23□□□□□ -1.89
HMGB1P09429 AP000889.2-201ENST00000532684 490 ntBASIC3.23□□□□□ -1.89
HMGB1P09429 AC068205.1-204ENST00000532989 481 ntTSL 3 BASIC3.23□□□□□ -1.89
HMGB1P09429 AC121758.2-201ENST00000553271 193 ntBASIC3.23□□□□□ -1.89
HMGB1P09429 AC109446.1-201ENST00000566172 220 ntBASIC3.23□□□□□ -1.89
HMGB1P09429 MIR3923-201ENST00000579521 83 ntBASIC3.23□□□□□ -1.89
HMGB1P09429 AP005671.1-201ENST00000581798 463 ntTSL 3 BASIC3.23□□□□□ -1.89
HMGB1P09429 AC025754.2-201ENST00000606491 432 ntBASIC3.23□□□□□ -1.89
HMGB1P09429 AC068944.2-201ENST00000610373 403 ntBASIC3.23□□□□□ -1.89
HMGB1P09429 MIR6840-201ENST00000611937 71 ntBASIC3.23□□□□□ -1.89
HMGB1P09429 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC3.22□□□□□ -1.89
HMGB1P09429 Y_RNA.436-201ENST00000384097 102 ntBASIC3.22□□□□□ -1.89
HMGB1P09429 SNORA9-201ENST00000384215 133 ntBASIC3.22□□□□□ -1.89
HMGB1P09429 MIR9-1-201ENST00000385198 89 ntBASIC3.22□□□□□ -1.89
HMGB1P09429 U3.40-201ENST00000408706 208 ntBASIC3.22□□□□□ -1.89
HMGB1P09429 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC3.22□□□□□ -1.89
HMGB1P09429 TIMM9P3-201ENST00000428659 274 ntBASIC3.22□□□□□ -1.89
HMGB1P09429 AC087499.2-201ENST00000432861 149 ntBASIC3.22□□□□□ -1.89
HMGB1P09429 MTND1P1-201ENST00000445453 368 ntBASIC3.22□□□□□ -1.89
HMGB1P09429 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC3.22□□□□□ -1.89
HMGB1P09429 RNU6-1037P-201ENST00000459571 107 ntBASIC3.22□□□□□ -1.89
HMGB1P09429 RN7SL297P-201ENST00000483161 293 ntBASIC3.22□□□□□ -1.89
HMGB1P09429 ANXA2P1-201ENST00000505539 926 ntBASIC3.22□□□□□ -1.89
HMGB1P09429 AC091885.1-201ENST00000506658 268 ntBASIC3.22□□□□□ -1.89
HMGB1P09429 AC093831.1-201ENST00000509166 434 ntTSL 3 BASIC3.22□□□□□ -1.89
HMGB1P09429 AC091887.1-201ENST00000514002 439 ntTSL 5 BASIC3.22□□□□□ -1.89
HMGB1P09429 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC3.22□□□□□ -1.89
HMGB1P09429 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.22□□□□□ -1.89
HMGB1P09429 AC084879.2-201ENST00000551656 369 ntTSL 3 BASIC3.22□□□□□ -1.89
HMGB1P09429 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC3.22□□□□□ -1.89
HMGB1P09429 AC023906.2-201ENST00000558343 462 ntTSL 3 BASIC3.22□□□□□ -1.89
HMGB1P09429 AC078795.3-201ENST00000602913 472 ntBASIC3.22□□□□□ -1.89
HMGB1P09429 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC3.22□□□□□ -1.89
HMGB1P09429 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.22□□□□□ -1.89
HMGB1P09429 SCOC-201ENST00000338517 1864 ntTSL 4 BASIC3.22□□□□□ -1.89
HMGB1P09429 RNA5SP387-201ENST00000364226 106 ntBASIC3.21□□□□□ -1.9
HMGB1P09429 RNU4-24P-201ENST00000364565 139 ntBASIC3.21□□□□□ -1.9
HMGB1P09429 Y_RNA.333-201ENST00000365274 102 ntBASIC3.21□□□□□ -1.9
HMGB1P09429 Y_RNA.372-201ENST00000365599 102 ntBASIC3.21□□□□□ -1.9
HMGB1P09429 RNU11-3P-201ENST00000391111 133 ntBASIC3.21□□□□□ -1.9
HMGB1P09429 RNU6-648P-201ENST00000410190 107 ntBASIC3.21□□□□□ -1.9
HMGB1P09429 RNU6-1068P-201ENST00000410958 103 ntBASIC3.21□□□□□ -1.9
HMGB1P09429 AC073626.1-201ENST00000415146 582 ntTSL 4 BASIC3.21□□□□□ -1.9
HMGB1P09429 AL133396.1-201ENST00000432048 687 ntBASIC3.21□□□□□ -1.9
HMGB1P09429 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC3.21□□□□□ -1.9
HMGB1P09429 RPS27P21-201ENST00000486977 252 ntBASIC3.21□□□□□ -1.9
HMGB1P09429 AC020703.1-201ENST00000505051 521 ntTSL 3 BASIC3.21□□□□□ -1.9
HMGB1P09429 RNU6-1281P-201ENST00000516223 105 ntBASIC3.21□□□□□ -1.9
HMGB1P09429 RNU6-1069P-201ENST00000516612 133 ntBASIC3.21□□□□□ -1.9
HMGB1P09429 AP005597.4-201ENST00000526762 229 ntBASIC3.21□□□□□ -1.9
HMGB1P09429 AC004486.1-201ENST00000546846 233 ntBASIC3.21□□□□□ -1.9
HMGB1P09429 C20orf24-208ENST00000639924 351 ntTSL 5 BASIC3.21□□□□□ -1.9
HMGB1P09429 RNF219-AS1-214ENST00000607862 6001 ntTSL 1 (best) BASIC3.21□□□□□ -1.9
HMGB1P09429 AC009541.1-201ENST00000438279 2662 ntBASIC3.2□□□□□ -1.9
HMGB1P09429 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC3.2□□□□□ -1.9
HMGB1P09429 AL136369.2-201ENST00000420825 537 ntTSL 3 BASIC3.2□□□□□ -1.9
HMGB1P09429 LINC00407-201ENST00000426509 295 ntTSL 5 BASIC3.2□□□□□ -1.9
HMGB1P09429 RPL23AP95-201ENST00000426806 265 ntBASIC3.2□□□□□ -1.9
HMGB1P09429 BMPR1B-AS1-201ENST00000510795 511 ntTSL 3 BASIC3.2□□□□□ -1.9
HMGB1P09429 RNU6-314P-201ENST00000516574 104 ntBASIC3.2□□□□□ -1.9
HMGB1P09429 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.2□□□□□ -1.9
HMGB1P09429 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.2□□□□□ -1.9
HMGB1P09429 FOPNL-205ENST00000573429 646 ntTSL 3 BASIC3.2□□□□□ -1.9
HMGB1P09429 MIR5692C1-201ENST00000585309 91 ntBASIC3.2□□□□□ -1.9
HMGB1P09429 AC064836.2-201ENST00000609491 462 ntBASIC3.2□□□□□ -1.9
HMGB1P09429 AL359314.1-201ENST00000616913 261 ntBASIC3.2□□□□□ -1.9
HMGB1P09429 CENPE-201ENST00000265148 8612 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
HMGB1P09429 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
HMGB1P09429 RGPD1-204ENST00000559485 5247 ntAPPRIS P2 TSL 1 (best) BASIC3.2□□□□□ -1.9
HMGB1P09429 SNORA36A-201ENST00000384221 132 ntBASIC3.19□□□□□ -1.9
HMGB1P09429 AP000275.1-201ENST00000411943 390 ntBASIC3.19□□□□□ -1.9
HMGB1P09429 TTTY3-201ENST00000417334 344 ntTSL 1 (best) BASIC3.19□□□□□ -1.9
HMGB1P09429 ARL5AP1-201ENST00000418991 388 ntBASIC3.19□□□□□ -1.9
HMGB1P09429 SEPT14P3-201ENST00000439401 183 ntBASIC3.19□□□□□ -1.9
HMGB1P09429 AL732372.2-207ENST00000445840 183 ntBASIC3.19□□□□□ -1.9
HMGB1P09429 MIR4435-2HG-213ENST00000451884 423 ntTSL 3 BASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 104.3 ms