Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 Y_RNA.783-201ENST00000613546 102 ntBASIC2.07□□□□□ -2.08
SDC3O75056 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.07□□□□□ -2.08
SDC3O75056 TTK-202ENST00000369798 3010 ntAPPRIS P3 TSL 1 (best) BASIC2.07□□□□□ -2.08
SDC3O75056 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.06□□□□□ -2.08
SDC3O75056 MTND5P26-201ENST00000426018 1752 ntBASIC2.06□□□□□ -2.08
SDC3O75056 RNU6-996P-201ENST00000365438 107 ntBASIC2.06□□□□□ -2.08
SDC3O75056 RNU6-1032P-201ENST00000384100 107 ntBASIC2.06□□□□□ -2.08
SDC3O75056 RNU6-1158P-201ENST00000391167 107 ntBASIC2.06□□□□□ -2.08
SDC3O75056 AC068050.1-201ENST00000394891 380 ntBASIC2.06□□□□□ -2.08
SDC3O75056 RNU6-1140P-201ENST00000410517 106 ntBASIC2.06□□□□□ -2.08
SDC3O75056 RNU4-55P-201ENST00000410731 137 ntBASIC2.06□□□□□ -2.08
SDC3O75056 BTF3L4P1-201ENST00000413813 468 ntBASIC2.06□□□□□ -2.08
SDC3O75056 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.06□□□□□ -2.08
SDC3O75056 AC010975.2-201ENST00000427781 588 ntBASIC2.06□□□□□ -2.08
SDC3O75056 DNAJC19P4-201ENST00000440115 345 ntBASIC2.06□□□□□ -2.08
SDC3O75056 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2.06□□□□□ -2.08
SDC3O75056 PRPS1P1-201ENST00000445305 876 ntBASIC2.06□□□□□ -2.08
SDC3O75056 AC073415.1-201ENST00000449240 153 ntBASIC2.06□□□□□ -2.08
SDC3O75056 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC2.06□□□□□ -2.08
SDC3O75056 SCARNA18-201ENST00000459004 134 ntBASIC2.06□□□□□ -2.08
SDC3O75056 AC105313.1-201ENST00000509121 353 ntBASIC2.06□□□□□ -2.08
SDC3O75056 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC2.06□□□□□ -2.08
SDC3O75056 SNORA4.4-201ENST00000515921 135 ntBASIC2.06□□□□□ -2.08
SDC3O75056 RNU4ATAC8P-201ENST00000516196 109 ntBASIC2.06□□□□□ -2.08
SDC3O75056 AC078814.3-201ENST00000553036 491 ntBASIC2.06□□□□□ -2.08
SDC3O75056 PWRN1-205ENST00000565295 465 ntTSL 3 BASIC2.06□□□□□ -2.08
SDC3O75056 AC080013.6-201ENST00000606185 215 ntBASIC2.06□□□□□ -2.08
SDC3O75056 AP001330.5-201ENST00000607176 411 ntBASIC2.06□□□□□ -2.08
SDC3O75056 uc_338.15-201ENST00000615470 191 ntBASIC2.06□□□□□ -2.08
SDC3O75056 U4.7-201ENST00000638126 106 ntBASIC2.06□□□□□ -2.08
SDC3O75056 AC002543.1-201ENST00000299783 1954 ntBASIC2.06□□□□□ -2.08
SDC3O75056 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.06□□□□□ -2.08
SDC3O75056 AP006437.1-201ENST00000641440 3685 ntBASIC2.05□□□□□ -2.08
SDC3O75056 PTPRQ-209ENST00000616559 8165 ntTSL 5 BASIC2.05□□□□□ -2.08
SDC3O75056 RNU6-1303P-201ENST00000364841 107 ntBASIC2.05□□□□□ -2.08
SDC3O75056 RNU5E-7P-201ENST00000365290 117 ntBASIC2.05□□□□□ -2.08
SDC3O75056 RNU4-52P-201ENST00000384209 138 ntBASIC2.05□□□□□ -2.08
SDC3O75056 MIR186-201ENST00000384988 86 ntBASIC2.05□□□□□ -2.08
SDC3O75056 RNU2-23P-201ENST00000410545 195 ntBASIC2.05□□□□□ -2.08
SDC3O75056 RNU2-16P-201ENST00000410712 136 ntBASIC2.05□□□□□ -2.08
SDC3O75056 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC2.05□□□□□ -2.08
SDC3O75056 EDDM3CP-201ENST00000415977 425 ntBASIC2.05□□□□□ -2.08
SDC3O75056 AC093911.1-201ENST00000419129 552 ntTSL 4 BASIC2.05□□□□□ -2.08
SDC3O75056 AC008267.5-201ENST00000424928 265 ntBASIC2.05□□□□□ -2.08
SDC3O75056 USP9YP14-201ENST00000430663 563 ntBASIC2.05□□□□□ -2.08
SDC3O75056 AL445646.1-201ENST00000431784 216 ntBASIC2.05□□□□□ -2.08
SDC3O75056 RNU7-180P-201ENST00000459240 63 ntBASIC2.05□□□□□ -2.08
SDC3O75056 snoU13.14-201ENST00000459372 104 ntBASIC2.05□□□□□ -2.08
SDC3O75056 AL163973.1-201ENST00000484753 577 ntBASIC2.05□□□□□ -2.08
SDC3O75056 MTND2P33-201ENST00000506452 1031 ntBASIC2.05□□□□□ -2.08
SDC3O75056 MTND3P5-201ENST00000512798 333 ntBASIC2.05□□□□□ -2.08
SDC3O75056 RNU6-295P-201ENST00000516901 104 ntBASIC2.05□□□□□ -2.08
SDC3O75056 AC108449.1-202ENST00000517632 478 ntTSL 3 BASIC2.05□□□□□ -2.08
SDC3O75056 AC023050.3-201ENST00000541142 333 ntBASIC2.05□□□□□ -2.08
SDC3O75056 HIF1AP1-201ENST00000553642 175 ntBASIC2.05□□□□□ -2.08
SDC3O75056 AC007631.1-201ENST00000578545 189 ntTSL 3 BASIC2.05□□□□□ -2.08
SDC3O75056 AC012507.3-201ENST00000603556 477 ntBASIC2.05□□□□□ -2.08
SDC3O75056 AC104073.3-201ENST00000610942 955 ntBASIC2.05□□□□□ -2.08
SDC3O75056 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC2.05□□□□□ -2.08
SDC3O75056 AC073534.2-201ENST00000620377 381 ntBASIC2.05□□□□□ -2.08
SDC3O75056 MTND4P14-201ENST00000435799 1354 ntBASIC2.05□□□□□ -2.08
SDC3O75056 OR2L2-202ENST00000641771 4300 ntAPPRIS P1 BASIC2.05□□□□□ -2.08
SDC3O75056 RNA5SP37-201ENST00000365420 130 ntBASIC2.04□□□□□ -2.08
SDC3O75056 RNU6-259P-201ENST00000383999 107 ntBASIC2.04□□□□□ -2.08
SDC3O75056 AL355497.1-201ENST00000406262 551 ntBASIC2.04□□□□□ -2.08
SDC3O75056 RNU6ATAC15P-201ENST00000408279 121 ntBASIC2.04□□□□□ -2.08
SDC3O75056 RNU2-2P-201ENST00000410396 191 ntBASIC2.04□□□□□ -2.08
SDC3O75056 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
SDC3O75056 HMGN2P38-201ENST00000423806 265 ntBASIC2.04□□□□□ -2.08
SDC3O75056 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC2.04□□□□□ -2.08
SDC3O75056 ODF2L-216ENST00000486215 311 ntTSL 2 BASIC2.04□□□□□ -2.08
SDC3O75056 AC090255.1-201ENST00000495779 349 ntBASIC2.04□□□□□ -2.08
SDC3O75056 AC097375.2-201ENST00000510416 579 ntTSL 5 BASIC2.04□□□□□ -2.08
SDC3O75056 RNU6ATAC9P-201ENST00000516210 116 ntBASIC2.04□□□□□ -2.08
SDC3O75056 RNU2-53P-201ENST00000516257 147 ntBASIC2.04□□□□□ -2.08
SDC3O75056 SNORA40.12-201ENST00000516329 111 ntBASIC2.04□□□□□ -2.08
SDC3O75056 SNORA25.17-201ENST00000517184 124 ntBASIC2.04□□□□□ -2.08
SDC3O75056 AP003469.3-201ENST00000518090 473 ntTSL 3 BASIC2.04□□□□□ -2.08
SDC3O75056 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC2.04□□□□□ -2.08
SDC3O75056 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC2.04□□□□□ -2.08
SDC3O75056 AP003392.2-201ENST00000527269 208 ntBASIC2.04□□□□□ -2.08
SDC3O75056 DEUP1-203ENST00000527307 767 ntTSL 3 BASIC2.04□□□□□ -2.08
SDC3O75056 AC007229.1-201ENST00000590455 412 ntBASIC2.04□□□□□ -2.08
SDC3O75056 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.04□□□□□ -2.08
SDC3O75056 AL589765.7-201ENST00000601684 629 ntTSL 3 BASIC2.04□□□□□ -2.08
SDC3O75056 AC097065.2-201ENST00000608159 533 ntBASIC2.04□□□□□ -2.08
SDC3O75056 U2.15-201ENST00000611544 191 ntBASIC2.04□□□□□ -2.08
SDC3O75056 U2.16-201ENST00000613119 191 ntBASIC2.04□□□□□ -2.08
SDC3O75056 U2.12-201ENST00000613778 191 ntBASIC2.04□□□□□ -2.08
SDC3O75056 U2.20-201ENST00000613956 192 ntBASIC2.04□□□□□ -2.08
SDC3O75056 ATG5-207ENST00000613993 733 ntTSL 1 (best) BASIC2.04□□□□□ -2.08
SDC3O75056 U2.9-201ENST00000615427 191 ntBASIC2.04□□□□□ -2.08
SDC3O75056 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC2.04□□□□□ -2.08
SDC3O75056 U2.11-201ENST00000616345 191 ntBASIC2.04□□□□□ -2.08
SDC3O75056 U2.2-201ENST00000616535 191 ntBASIC2.04□□□□□ -2.08
SDC3O75056 U2.3-201ENST00000617785 191 ntBASIC2.04□□□□□ -2.08
SDC3O75056 U2.19-201ENST00000618602 191 ntBASIC2.04□□□□□ -2.08
SDC3O75056 RNU2-1-201ENST00000618664 191 ntBASIC2.04□□□□□ -2.08
SDC3O75056 U2.6-201ENST00000619225 191 ntBASIC2.04□□□□□ -2.08
SDC3O75056 U2.5-201ENST00000619465 191 ntBASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 167 ms