Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 RRM2B-207ENST00000519962 201 ntTSL 1 (best) BASIC2.59□□□□□ -1.99
LMX1BO60663 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC2.59□□□□□ -1.99
LMX1BO60663 SUB1P3-201ENST00000564581 315 ntBASIC2.59□□□□□ -1.99
LMX1BO60663 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.59□□□□□ -1.99
LMX1BO60663 BNIP3P16-201ENST00000589779 534 ntBASIC2.59□□□□□ -1.99
LMX1BO60663 AP000942.4-201ENST00000604811 241 ntBASIC2.59□□□□□ -1.99
LMX1BO60663 MIR3976-201ENST00000606807 139 ntBASIC2.59□□□□□ -1.99
LMX1BO60663 SNORD58B-201ENST00000607313 66 ntBASIC2.59□□□□□ -1.99
LMX1BO60663 FTX_3.1-201ENST00000610451 147 ntBASIC2.59□□□□□ -1.99
LMX1BO60663 SMAD5-AS1_1.1-201ENST00000619886 266 ntBASIC2.59□□□□□ -1.99
LMX1BO60663 AC090617.7-201ENST00000623952 126 ntBASIC2.59□□□□□ -1.99
LMX1BO60663 MAP3K2-203ENST00000409947 10992 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
LMX1BO60663 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC2.58□□□□□ -2
LMX1BO60663 Y_RNA.80-201ENST00000362996 102 ntBASIC2.58□□□□□ -2
LMX1BO60663 RNU6-778P-201ENST00000363269 103 ntBASIC2.58□□□□□ -2
LMX1BO60663 Y_RNA.144-201ENST00000363521 113 ntBASIC2.58□□□□□ -2
LMX1BO60663 RNU6-1317P-201ENST00000364582 104 ntBASIC2.58□□□□□ -2
LMX1BO60663 RNU6-827P-201ENST00000365553 106 ntBASIC2.58□□□□□ -2
LMX1BO60663 OR51A4-201ENST00000380373 1002 ntAPPRIS P1 BASIC2.58□□□□□ -2
LMX1BO60663 Y_RNA.485-201ENST00000384395 102 ntBASIC2.58□□□□□ -2
LMX1BO60663 MIR518D-201ENST00000385014 87 ntBASIC2.58□□□□□ -2
LMX1BO60663 Y_RNA.605-201ENST00000410577 105 ntBASIC2.58□□□□□ -2
LMX1BO60663 HMGB3P2-201ENST00000411913 584 ntBASIC2.58□□□□□ -2
LMX1BO60663 EEF1A1P41-201ENST00000414667 207 ntBASIC2.58□□□□□ -2
LMX1BO60663 TRAPPC2P4-201ENST00000421750 331 ntBASIC2.58□□□□□ -2
LMX1BO60663 AL139281.1-201ENST00000422120 335 ntBASIC2.58□□□□□ -2
LMX1BO60663 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC2.58□□□□□ -2
LMX1BO60663 AC069257.1-202ENST00000425275 422 ntTSL 3 BASIC2.58□□□□□ -2
LMX1BO60663 AC098614.2-201ENST00000426040 255 ntBASIC2.58□□□□□ -2
LMX1BO60663 AC092573.2-201ENST00000434546 243 ntBASIC2.58□□□□□ -2
LMX1BO60663 RPS29P6-201ENST00000438196 145 ntBASIC2.58□□□□□ -2
LMX1BO60663 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.58□□□□□ -2
LMX1BO60663 DAP3P1-201ENST00000441522 278 ntBASIC2.58□□□□□ -2
LMX1BO60663 RPS29P27-201ENST00000463711 170 ntBASIC2.58□□□□□ -2
LMX1BO60663 HMGN2P13-201ENST00000476476 274 ntBASIC2.58□□□□□ -2
LMX1BO60663 Y_RNA.661-201ENST00000516003 99 ntBASIC2.58□□□□□ -2
LMX1BO60663 RNU4-77P-201ENST00000516692 156 ntBASIC2.58□□□□□ -2
LMX1BO60663 RNU6-1282P-201ENST00000516735 96 ntBASIC2.58□□□□□ -2
LMX1BO60663 CBX3P8-201ENST00000532412 525 ntBASIC2.58□□□□□ -2
LMX1BO60663 AC126177.2-201ENST00000552154 452 ntTSL 3 BASIC2.58□□□□□ -2
LMX1BO60663 AL117187.1-201ENST00000555482 181 ntBASIC2.58□□□□□ -2
LMX1BO60663 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC2.58□□□□□ -2
LMX1BO60663 MSMB-202ENST00000582163 488 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
LMX1BO60663 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC2.58□□□□□ -2
LMX1BO60663 AL158827.2-201ENST00000602494 330 ntBASIC2.58□□□□□ -2
LMX1BO60663 AL645944.1-201ENST00000603857 493 ntBASIC2.58□□□□□ -2
LMX1BO60663 AC005046.1-201ENST00000608515 625 ntBASIC2.58□□□□□ -2
LMX1BO60663 AC006157.1-201ENST00000611750 366 ntBASIC2.58□□□□□ -2
LMX1BO60663 AL161629.2-201ENST00000615347 275 ntBASIC2.58□□□□□ -2
LMX1BO60663 AL691447.3-201ENST00000635020 330 ntBASIC2.58□□□□□ -2
LMX1BO60663 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.58□□□□□ -2
LMX1BO60663 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC2.58□□□□□ -2
LMX1BO60663 ECT2-211ENST00000441497 2825 ntAPPRIS P2 TSL 1 (best) BASIC2.58□□□□□ -2
LMX1BO60663 NEDD4-208ENST00000508342 7235 ntTSL 1 (best) BASIC2.58□□□□□ -2
LMX1BO60663 AC103988.1-201ENST00000566382 2177 ntBASIC2.57□□□□□ -2
LMX1BO60663 ZNF280C-201ENST00000370978 4634 ntAPPRIS P1 TSL 1 (best) BASIC2.57□□□□□ -2
LMX1BO60663 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.57□□□□□ -2
LMX1BO60663 RPL9P7-201ENST00000330965 580 ntBASIC2.57□□□□□ -2
LMX1BO60663 MIR449A-201ENST00000362113 91 ntBASIC2.57□□□□□ -2
LMX1BO60663 MIR22-201ENST00000362190 85 ntBASIC2.57□□□□□ -2
LMX1BO60663 RNU6-428P-201ENST00000362942 107 ntBASIC2.57□□□□□ -2
LMX1BO60663 RNU6-1309P-201ENST00000363305 108 ntBASIC2.57□□□□□ -2
LMX1BO60663 RNU6-270P-201ENST00000364131 105 ntBASIC2.57□□□□□ -2
LMX1BO60663 RNU1-115P-201ENST00000365329 160 ntBASIC2.57□□□□□ -2
LMX1BO60663 Y_RNA.364-201ENST00000365532 101 ntBASIC2.57□□□□□ -2
LMX1BO60663 DYNLT3P1-201ENST00000378574 347 ntBASIC2.57□□□□□ -2
LMX1BO60663 DEFB109C-201ENST00000382575 264 ntBASIC2.57□□□□□ -2
LMX1BO60663 DEFB109B-201ENST00000382656 264 ntBASIC2.57□□□□□ -2
LMX1BO60663 RNU6-574P-201ENST00000384265 107 ntBASIC2.57□□□□□ -2
LMX1BO60663 RNU6-463P-201ENST00000384340 107 ntBASIC2.57□□□□□ -2
LMX1BO60663 Y_RNA.527-201ENST00000384573 102 ntBASIC2.57□□□□□ -2
LMX1BO60663 MIR181A2-201ENST00000384863 110 ntBASIC2.57□□□□□ -2
LMX1BO60663 SAR1AP2-201ENST00000392696 594 ntBASIC2.57□□□□□ -2
LMX1BO60663 RN7SKP220-201ENST00000410611 288 ntBASIC2.57□□□□□ -2
LMX1BO60663 AL590383.1-201ENST00000428602 75 ntBASIC2.57□□□□□ -2
LMX1BO60663 AL513043.1-201ENST00000439124 535 ntBASIC2.57□□□□□ -2
LMX1BO60663 AC098831.1-201ENST00000440661 216 ntBASIC2.57□□□□□ -2
LMX1BO60663 IPO7P1-201ENST00000442031 636 ntBASIC2.57□□□□□ -2
LMX1BO60663 AL078601.1-201ENST00000444542 271 ntBASIC2.57□□□□□ -2
LMX1BO60663 snoU109.2-201ENST00000459316 135 ntBASIC2.57□□□□□ -2
LMX1BO60663 RNU6-1037P-201ENST00000459571 107 ntBASIC2.57□□□□□ -2
LMX1BO60663 RPL9P9-202ENST00000466501 579 ntBASIC2.57□□□□□ -2
LMX1BO60663 AC117440.1-201ENST00000474107 571 ntBASIC2.57□□□□□ -2
LMX1BO60663 FO393415.2-201ENST00000480085 343 ntBASIC2.57□□□□□ -2
LMX1BO60663 AC068781.1-201ENST00000488231 618 ntBASIC2.57□□□□□ -2
LMX1BO60663 Y_RNA.687-201ENST00000516558 91 ntBASIC2.57□□□□□ -2
LMX1BO60663 RNA5SP468-201ENST00000516782 93 ntBASIC2.57□□□□□ -2
LMX1BO60663 RNA5SP291-201ENST00000517222 105 ntBASIC2.57□□□□□ -2
LMX1BO60663 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.57□□□□□ -2
LMX1BO60663 IGHVII-62-1-201ENST00000519283 235 ntBASIC2.57□□□□□ -2
LMX1BO60663 AC103996.1-201ENST00000555468 102 ntBASIC2.57□□□□□ -2
LMX1BO60663 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC2.57□□□□□ -2
LMX1BO60663 AC024610.1-201ENST00000582685 323 ntTSL 3 BASIC2.57□□□□□ -2
LMX1BO60663 AC005899.2-201ENST00000584353 90 ntBASIC2.57□□□□□ -2
LMX1BO60663 ELOCP29-201ENST00000588193 334 ntBASIC2.57□□□□□ -2
LMX1BO60663 AC009314.1-201ENST00000603871 304 ntBASIC2.57□□□□□ -2
LMX1BO60663 AL162373.1-201ENST00000620433 407 ntBASIC2.57□□□□□ -2
LMX1BO60663 MPP6-209ENST00000625307 126 ntTSL 5 BASIC2.57□□□□□ -2
LMX1BO60663 LRIF1-203ENST00000494675 1912 ntAPPRIS ALT2 TSL 2 BASIC2.57□□□□□ -2
LMX1BO60663 ZGRF1-212ENST00000612287 2176 ntTSL 1 (best) BASIC2.57□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 100.3 ms