Protein–RNA interactions for Protein: O43248

HOXC11, Homeobox protein Hox-C11, humanhuman

Predicted RBP Predictions only

Length 304 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11O43248 AL138963.2-201ENST00000605137 226 ntBASIC2.79□□□□□ -1.96
HOXC11O43248 RNU4-82P-201ENST00000362443 140 ntBASIC2.78□□□□□ -1.96
HOXC11O43248 U3.12-201ENST00000364498 214 ntBASIC2.78□□□□□ -1.96
HOXC11O43248 RNU6-1329P-201ENST00000365664 107 ntBASIC2.78□□□□□ -1.96
HOXC11O43248 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.78□□□□□ -1.96
HOXC11O43248 AL451074.5-201ENST00000415894 435 ntBASIC2.78□□□□□ -1.96
HOXC11O43248 CYCSP48-201ENST00000417124 323 ntBASIC2.78□□□□□ -1.96
HOXC11O43248 AC112220.1-201ENST00000434628 355 ntBASIC2.78□□□□□ -1.96
HOXC11O43248 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC2.78□□□□□ -1.96
HOXC11O43248 AC091153.2-202ENST00000441700 384 ntTSL 3 BASIC2.78□□□□□ -1.96
HOXC11O43248 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC2.78□□□□□ -1.96
HOXC11O43248 snoU13.14-201ENST00000459372 104 ntBASIC2.78□□□□□ -1.96
HOXC11O43248 MTCYBP18-201ENST00000501056 747 ntBASIC2.78□□□□□ -1.96
HOXC11O43248 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.78□□□□□ -1.96
HOXC11O43248 AC009314.1-201ENST00000603871 304 ntBASIC2.78□□□□□ -1.96
HOXC11O43248 AL355297.2-201ENST00000604792 129 ntBASIC2.78□□□□□ -1.96
HOXC11O43248 AC005046.1-201ENST00000608515 625 ntBASIC2.78□□□□□ -1.96
HOXC11O43248 AL020991.1-201ENST00000612314 373 ntBASIC2.78□□□□□ -1.96
HOXC11O43248 AC093913.1-201ENST00000614178 329 ntBASIC2.78□□□□□ -1.96
HOXC11O43248 ZNRD1-AS1_2.5-201ENST00000614729 76 ntBASIC2.78□□□□□ -1.96
HOXC11O43248 AC092608.2-201ENST00000624427 218 ntBASIC2.78□□□□□ -1.96
HOXC11O43248 AL160394.1-201ENST00000624765 724 ntBASIC2.78□□□□□ -1.96
HOXC11O43248 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC2.78□□□□□ -1.96
HOXC11O43248 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC2.78□□□□□ -1.97
HOXC11O43248 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC2.77□□□□□ -1.97
HOXC11O43248 RNU6-1252P-201ENST00000363054 104 ntBASIC2.77□□□□□ -1.97
HOXC11O43248 RNU6-254P-201ENST00000363377 107 ntBASIC2.77□□□□□ -1.97
HOXC11O43248 RNA5SP125-201ENST00000364843 120 ntBASIC2.77□□□□□ -1.97
HOXC11O43248 RNA5SP126-201ENST00000365092 109 ntBASIC2.77□□□□□ -1.97
HOXC11O43248 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
HOXC11O43248 RNU6-128P-201ENST00000383976 107 ntBASIC2.77□□□□□ -1.97
HOXC11O43248 RNU6-301P-201ENST00000384277 107 ntBASIC2.77□□□□□ -1.97
HOXC11O43248 RNU6-692P-201ENST00000384496 107 ntBASIC2.77□□□□□ -1.97
HOXC11O43248 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
HOXC11O43248 AC007314.1-201ENST00000414538 565 ntTSL 4 BASIC2.77□□□□□ -1.97
HOXC11O43248 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXC11O43248 AC003685.2-201ENST00000422795 395 ntBASIC2.77□□□□□ -1.97
HOXC11O43248 UBE2V1P4-201ENST00000425374 344 ntBASIC2.77□□□□□ -1.97
HOXC11O43248 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXC11O43248 AL161788.1-201ENST00000441805 169 ntBASIC2.77□□□□□ -1.97
HOXC11O43248 AL118523.1-201ENST00000444436 480 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXC11O43248 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXC11O43248 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC2.77□□□□□ -1.97
HOXC11O43248 RPS3P1-201ENST00000456781 192 ntBASIC2.77□□□□□ -1.97
HOXC11O43248 U8.21-201ENST00000459536 136 ntBASIC2.77□□□□□ -1.97
HOXC11O43248 AL121594.1-201ENST00000475906 575 ntBASIC2.77□□□□□ -1.97
HOXC11O43248 RPS27AP9-201ENST00000477681 438 ntBASIC2.77□□□□□ -1.97
HOXC11O43248 AC090525.1-201ENST00000479116 478 ntBASIC2.77□□□□□ -1.97
HOXC11O43248 AC008526.1-201ENST00000509149 338 ntBASIC2.77□□□□□ -1.97
HOXC11O43248 AC096725.1-201ENST00000514266 313 ntBASIC2.77□□□□□ -1.97
HOXC11O43248 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC2.77□□□□□ -1.97
HOXC11O43248 RGS4-209ENST00000531057 544 ntTSL 4 BASIC2.77□□□□□ -1.97
HOXC11O43248 AC026371.1-201ENST00000551867 419 ntBASIC2.77□□□□□ -1.97
HOXC11O43248 AC100830.2-201ENST00000581636 240 ntBASIC2.77□□□□□ -1.97
HOXC11O43248 MIR3605-201ENST00000583214 100 ntBASIC2.77□□□□□ -1.97
HOXC11O43248 AL356157.2-201ENST00000605122 111 ntBASIC2.77□□□□□ -1.97
HOXC11O43248 CTHRC1P1-201ENST00000605383 469 ntBASIC2.77□□□□□ -1.97
HOXC11O43248 AC090517.3-201ENST00000625170 141 ntBASIC2.77□□□□□ -1.97
HOXC11O43248 AL160287.1-202ENST00000638113 454 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXC11O43248 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC2.77□□□□□ -1.97
HOXC11O43248 KCNIP4-IT1-201ENST00000627566 9848 ntBASIC2.77□□□□□ -1.97
HOXC11O43248 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.77□□□□□ -1.97
HOXC11O43248 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.77□□□□□ -1.97
HOXC11O43248 MTND4P5-201ENST00000435821 1374 ntBASIC2.76□□□□□ -1.97
HOXC11O43248 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.76□□□□□ -1.97
HOXC11O43248 RNU6-1072P-201ENST00000384703 107 ntBASIC2.76□□□□□ -1.97
HOXC11O43248 RNU6-443P-201ENST00000384780 107 ntBASIC2.76□□□□□ -1.97
HOXC11O43248 CBX3P9-201ENST00000402326 552 ntBASIC2.76□□□□□ -1.97
HOXC11O43248 AL356057.3-201ENST00000402607 340 ntBASIC2.76□□□□□ -1.97
HOXC11O43248 AL139095.1-201ENST00000404326 391 ntBASIC2.76□□□□□ -1.97
HOXC11O43248 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXC11O43248 AC005482.1-201ENST00000420758 575 ntTSL 4 BASIC2.76□□□□□ -1.97
HOXC11O43248 AC073342.1-202ENST00000446192 457 ntTSL 5 BASIC2.76□□□□□ -1.97
HOXC11O43248 NFU1P2-201ENST00000448700 469 ntBASIC2.76□□□□□ -1.97
HOXC11O43248 AP000852.1-201ENST00000472460 573 ntBASIC2.76□□□□□ -1.97
HOXC11O43248 RN7SL429P-201ENST00000479090 223 ntBASIC2.76□□□□□ -1.97
HOXC11O43248 RPS29P25-201ENST00000481709 171 ntBASIC2.76□□□□□ -1.97
HOXC11O43248 RN7SL489P-201ENST00000486185 223 ntBASIC2.76□□□□□ -1.97
HOXC11O43248 RN7SL327P-201ENST00000488659 223 ntBASIC2.76□□□□□ -1.97
HOXC11O43248 RPL30P1-201ENST00000488676 339 ntBASIC2.76□□□□□ -1.97
HOXC11O43248 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXC11O43248 FAM206BP-201ENST00000510179 541 ntBASIC2.76□□□□□ -1.97
HOXC11O43248 AF213884.2-201ENST00000510417 903 ntBASIC2.76□□□□□ -1.97
HOXC11O43248 AC008892.1-201ENST00000511861 384 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXC11O43248 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC2.76□□□□□ -1.97
HOXC11O43248 AC093249.1-201ENST00000567049 203 ntBASIC2.76□□□□□ -1.97
HOXC11O43248 ELOCP5-201ENST00000604924 333 ntBASIC2.76□□□□□ -1.97
HOXC11O43248 AC064836.2-201ENST00000609491 462 ntBASIC2.76□□□□□ -1.97
HOXC11O43248 HMGB1P24-202ENST00000615653 685 ntBASIC2.76□□□□□ -1.97
HOXC11O43248 RN7SL853P-201ENST00000617250 223 ntBASIC2.76□□□□□ -1.97
HOXC11O43248 AL159153.1-201ENST00000619688 317 ntBASIC2.76□□□□□ -1.97
HOXC11O43248 AC090617.10-201ENST00000624308 134 ntBASIC2.76□□□□□ -1.97
HOXC11O43248 FO624990.1-201ENST00000636373 85 ntBASIC2.76□□□□□ -1.97
HOXC11O43248 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
HOXC11O43248 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.76□□□□□ -1.97
HOXC11O43248 MAP4K3-205ENST00000437545 3924 ntTSL 5 BASIC2.76□□□□□ -1.97
HOXC11O43248 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.76□□□□□ -1.97
HOXC11O43248 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC2.75□□□□□ -1.97
HOXC11O43248 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.75□□□□□ -1.97
HOXC11O43248 RPL9P7-201ENST00000330965 580 ntBASIC2.75□□□□□ -1.97
Retrieved 100 of 98,524 protein–RNA pairs in 258.4 ms