Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 MIR4431-201ENST00000579990 94 ntBASIC4.43□□□□□ -1.7
USP3Q9Y6I4 PSMD5-AS1-203ENST00000589026 525 ntTSL 5 BASIC4.43□□□□□ -1.7
USP3Q9Y6I4 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC4.43□□□□□ -1.7
USP3Q9Y6I4 ARID2-206ENST00000457135 4356 ntTSL 1 (best) BASIC4.43□□□□□ -1.7
USP3Q9Y6I4 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC4.43□□□□□ -1.7
USP3Q9Y6I4 ADGRG2-201ENST00000340581 3594 ntTSL 2 BASIC4.43□□□□□ -1.7
USP3Q9Y6I4 RTKN2-201ENST00000315289 2383 ntTSL 2 BASIC4.43□□□□□ -1.7
USP3Q9Y6I4 AC024940.1-203ENST00000398963 4423 ntAPPRIS ALT2 TSL 5 BASIC4.43□□□□□ -1.7
USP3Q9Y6I4 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
USP3Q9Y6I4 CNTN6-205ENST00000446702 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.43□□□□□ -1.7
USP3Q9Y6I4 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
USP3Q9Y6I4 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC4.42□□□□□ -1.7
USP3Q9Y6I4 RC3H1-201ENST00000258349 10988 ntAPPRIS P3 TSL 1 (best) BASIC4.42□□□□□ -1.7
USP3Q9Y6I4 RNA5SP205-201ENST00000364653 136 ntBASIC4.42□□□□□ -1.7
USP3Q9Y6I4 RNU6-257P-201ENST00000410238 98 ntBASIC4.42□□□□□ -1.7
USP3Q9Y6I4 LINC01341-201ENST00000419361 552 ntTSL 2 BASIC4.42□□□□□ -1.7
USP3Q9Y6I4 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC4.42□□□□□ -1.7
USP3Q9Y6I4 AL158209.1-201ENST00000433460 439 ntTSL 3 BASIC4.42□□□□□ -1.7
USP3Q9Y6I4 FPGT-203ENST00000467578 601 ntTSL 2 BASIC4.42□□□□□ -1.7
USP3Q9Y6I4 AC017015.2-201ENST00000497946 376 ntTSL 2 BASIC4.42□□□□□ -1.7
USP3Q9Y6I4 AC113383.1-204ENST00000507060 552 ntTSL 3 BASIC4.42□□□□□ -1.7
USP3Q9Y6I4 AC005921.1-201ENST00000510589 286 ntBASIC4.42□□□□□ -1.7
USP3Q9Y6I4 LINC02374-202ENST00000515222 578 ntTSL 4 BASIC4.42□□□□□ -1.7
USP3Q9Y6I4 SNORA31.9-201ENST00000516429 84 ntBASIC4.42□□□□□ -1.7
USP3Q9Y6I4 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC4.42□□□□□ -1.7
USP3Q9Y6I4 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC4.42□□□□□ -1.7
USP3Q9Y6I4 OSBPL8-202ENST00000393249 7047 ntAPPRIS ALT1 TSL 1 (best) BASIC4.42□□□□□ -1.7
USP3Q9Y6I4 CTNNA3-203ENST00000433211 10675 ntAPPRIS P1 TSL 1 (best) BASIC4.42□□□□□ -1.7
USP3Q9Y6I4 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
USP3Q9Y6I4 OBSCN-214ENST00000636875 23907 ntTSL 5 BASIC4.41□□□□□ -1.7
USP3Q9Y6I4 RAP1GDS1-205ENST00000408927 3681 ntAPPRIS P3 TSL 2 BASIC4.41□□□□□ -1.7
USP3Q9Y6I4 MAPK10-349ENST00000641767 3661 ntBASIC4.41□□□□□ -1.7
USP3Q9Y6I4 PKHD1-202ENST00000371117 16282 ntAPPRIS P4 TSL 1 (best) BASIC4.41□□□□□ -1.7
USP3Q9Y6I4 AC010332.2-201ENST00000613083 1904 ntBASIC4.41□□□□□ -1.7
USP3Q9Y6I4 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC4.41□□□□□ -1.7
USP3Q9Y6I4 RNU6-799P-201ENST00000363567 107 ntBASIC4.41□□□□□ -1.7
USP3Q9Y6I4 RNU6-381P-201ENST00000391259 108 ntBASIC4.41□□□□□ -1.7
USP3Q9Y6I4 MIR1179-201ENST00000408703 91 ntBASIC4.41□□□□□ -1.7
USP3Q9Y6I4 AC099548.1-201ENST00000421443 426 ntBASIC4.41□□□□□ -1.7
USP3Q9Y6I4 VDAC1P3-201ENST00000434069 851 ntBASIC4.41□□□□□ -1.7
USP3Q9Y6I4 Y_RNA.637-201ENST00000459424 114 ntBASIC4.41□□□□□ -1.7
USP3Q9Y6I4 RPL29-203ENST00000475248 551 ntAPPRIS P1 TSL 3 BASIC4.41□□□□□ -1.7
USP3Q9Y6I4 PPBPP1-201ENST00000510807 373 ntBASIC4.41□□□□□ -1.7
USP3Q9Y6I4 AC107027.2-201ENST00000512197 115 ntBASIC4.41□□□□□ -1.7
USP3Q9Y6I4 RNU2-12P-201ENST00000517216 168 ntBASIC4.41□□□□□ -1.7
USP3Q9Y6I4 CARD18-203ENST00000532895 422 ntTSL 2 BASIC4.41□□□□□ -1.7
USP3Q9Y6I4 AC021739.1-201ENST00000559631 174 ntBASIC4.41□□□□□ -1.7
USP3Q9Y6I4 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
USP3Q9Y6I4 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC4.41□□□□□ -1.7
USP3Q9Y6I4 RPS6KA6-204ENST00000620340 8169 ntTSL 5 BASIC4.41□□□□□ -1.7
USP3Q9Y6I4 AL133383.2-201ENST00000622958 2336 ntBASIC4.41□□□□□ -1.7
USP3Q9Y6I4 GABRG2-214ENST00000639111 11735 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
USP3Q9Y6I4 C5orf63-205ENST00000535381 5680 ntTSL 3 BASIC4.41□□□□□ -1.7
USP3Q9Y6I4 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC4.41□□□□□ -1.7
USP3Q9Y6I4 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC4.41□□□□□ -1.7
USP3Q9Y6I4 LINC02458-201ENST00000500381 2941 ntTSL 2 BASIC4.41□□□□□ -1.7
USP3Q9Y6I4 ZNF285-205ENST00000614994 6012 ntAPPRIS P3 TSL 1 (best) BASIC4.41□□□□□ -1.7
USP3Q9Y6I4 USP8P1-201ENST00000494673 3183 ntBASIC4.41□□□□□ -1.7
USP3Q9Y6I4 PRKACB-202ENST00000370682 4288 ntTSL 1 (best) BASIC4.41□□□□□ -1.7
USP3Q9Y6I4 LINC01376-202ENST00000424895 1949 ntTSL 2 BASIC4.4□□□□□ -1.7
USP3Q9Y6I4 NEAT1-202ENST00000501122 22743 ntBASIC4.4□□□□□ -1.7
USP3Q9Y6I4 CEP152-203ENST00000399334 5097 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.7
USP3Q9Y6I4 CD80-201ENST00000264246 2725 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.7
USP3Q9Y6I4 LINC01630-206ENST00000635103 4292 ntTSL 5 BASIC4.4□□□□□ -1.7
USP3Q9Y6I4 DOCK7-211ENST00000634264 6303 ntAPPRIS ALT2 TSL 5 BASIC4.4□□□□□ -1.7
USP3Q9Y6I4 RNU1-94P-201ENST00000362627 173 ntBASIC4.4□□□□□ -1.71
USP3Q9Y6I4 U3.26-201ENST00000391236 204 ntBASIC4.4□□□□□ -1.71
USP3Q9Y6I4 RPS26P8-201ENST00000393490 348 ntBASIC4.4□□□□□ -1.71
USP3Q9Y6I4 RNU6-710P-201ENST00000410424 105 ntBASIC4.4□□□□□ -1.71
USP3Q9Y6I4 RPL30P13-201ENST00000418873 348 ntBASIC4.4□□□□□ -1.71
USP3Q9Y6I4 AL591419.1-201ENST00000427423 339 ntBASIC4.4□□□□□ -1.71
USP3Q9Y6I4 AC004975.1-201ENST00000428733 208 ntBASIC4.4□□□□□ -1.71
USP3Q9Y6I4 HLA-N-201ENST00000437516 135 ntBASIC4.4□□□□□ -1.71
USP3Q9Y6I4 AC090525.1-201ENST00000479116 478 ntBASIC4.4□□□□□ -1.71
USP3Q9Y6I4 RPS29P19-201ENST00000479709 171 ntBASIC4.4□□□□□ -1.71
USP3Q9Y6I4 AC027176.1-201ENST00000560204 514 ntBASIC4.4□□□□□ -1.71
USP3Q9Y6I4 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC4.4□□□□□ -1.71
USP3Q9Y6I4 AL162713.1-201ENST00000604480 262 ntBASIC4.4□□□□□ -1.71
USP3Q9Y6I4 LINC00901.1-201ENST00000617252 152 ntBASIC4.4□□□□□ -1.71
USP3Q9Y6I4 MIR7151-201ENST00000617477 60 ntBASIC4.4□□□□□ -1.71
USP3Q9Y6I4 ZFYVE16-201ENST00000338008 6773 ntAPPRIS P1 TSL 1 (best) BASIC4.4□□□□□ -1.71
USP3Q9Y6I4 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC4.4□□□□□ -1.71
USP3Q9Y6I4 MRE11-202ENST00000323977 2588 ntTSL 1 (best) BASIC4.4□□□□□ -1.71
USP3Q9Y6I4 FBXL13-204ENST00000436908 2577 ntTSL 5 BASIC4.4□□□□□ -1.71
USP3Q9Y6I4 ATP7A-202ENST00000343533 8289 ntTSL 5 BASIC4.39□□□□□ -1.71
USP3Q9Y6I4 RIMS2-201ENST00000262231 3854 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
USP3Q9Y6I4 EPHA7-202ENST00000369303 6588 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
USP3Q9Y6I4 AKAP11-201ENST00000025301 9920 ntAPPRIS P1 TSL 1 (best) BASIC4.39□□□□□ -1.71
USP3Q9Y6I4 Y_RNA.329-201ENST00000365209 107 ntBASIC4.39□□□□□ -1.71
USP3Q9Y6I4 RNU1-64P-201ENST00000365443 163 ntBASIC4.39□□□□□ -1.71
USP3Q9Y6I4 SNORA1.3-201ENST00000384676 136 ntBASIC4.39□□□□□ -1.71
USP3Q9Y6I4 EI24P2-201ENST00000397776 1076 ntBASIC4.39□□□□□ -1.71
USP3Q9Y6I4 MIR208B-201ENST00000401172 77 ntBASIC4.39□□□□□ -1.71
USP3Q9Y6I4 AL357075.1-201ENST00000404107 726 ntBASIC4.39□□□□□ -1.71
USP3Q9Y6I4 ATP5J2-209ENST00000488775 306 ntTSL 2 BASIC4.39□□□□□ -1.71
USP3Q9Y6I4 RN7SKP21-201ENST00000516503 220 ntBASIC4.39□□□□□ -1.71
USP3Q9Y6I4 ACA59.2-201ENST00000517061 156 ntBASIC4.39□□□□□ -1.71
USP3Q9Y6I4 MIR3923-201ENST00000579521 83 ntBASIC4.39□□□□□ -1.71
USP3Q9Y6I4 MIR4744-201ENST00000581563 82 ntBASIC4.39□□□□□ -1.71
USP3Q9Y6I4 MIR432-201ENST00000606207 94 ntBASIC4.39□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 108.4 ms