Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 MIR3616-201ENST00000584070 92 ntBASIC4.41□□□□□ -1.7
CCDC9Q9Y3X0 LARP7P1-201ENST00000605576 316 ntBASIC4.41□□□□□ -1.7
CCDC9Q9Y3X0 RNVU1-4-201ENST00000612985 164 ntBASIC4.41□□□□□ -1.7
CCDC9Q9Y3X0 ZBTB37-201ENST00000367701 19128 ntAPPRIS P1 TSL 1 (best) BASIC4.41□□□□□ -1.7
CCDC9Q9Y3X0 NOX4-202ENST00000343727 3347 ntTSL 2 BASIC4.41□□□□□ -1.7
CCDC9Q9Y3X0 FOXP2-206ENST00000393491 6085 ntTSL 5 BASIC4.41□□□□□ -1.7
CCDC9Q9Y3X0 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC4.4□□□□□ -1.7
CCDC9Q9Y3X0 AC069228.1-201ENST00000546936 1615 ntTSL 3 BASIC4.4□□□□□ -1.7
CCDC9Q9Y3X0 RNU6-529P-201ENST00000363383 104 ntBASIC4.4□□□□□ -1.71
CCDC9Q9Y3X0 U3.6-201ENST00000363622 211 ntBASIC4.4□□□□□ -1.71
CCDC9Q9Y3X0 U8.8-201ENST00000365399 135 ntBASIC4.4□□□□□ -1.71
CCDC9Q9Y3X0 Y_RNA.384-201ENST00000383909 102 ntBASIC4.4□□□□□ -1.71
CCDC9Q9Y3X0 Y_RNA.529-201ENST00000384586 119 ntBASIC4.4□□□□□ -1.71
CCDC9Q9Y3X0 CYCSP48-201ENST00000417124 323 ntBASIC4.4□□□□□ -1.71
CCDC9Q9Y3X0 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC9Q9Y3X0 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC9Q9Y3X0 AC022018.1-201ENST00000430685 241 ntBASIC4.4□□□□□ -1.71
CCDC9Q9Y3X0 ATP1B3-AS1-201ENST00000492725 376 ntTSL 5 BASIC4.4□□□□□ -1.71
CCDC9Q9Y3X0 AC016632.1-201ENST00000503994 196 ntBASIC4.4□□□□□ -1.71
CCDC9Q9Y3X0 FGF7P4-201ENST00000509595 295 ntBASIC4.4□□□□□ -1.71
CCDC9Q9Y3X0 MTND3P22-201ENST00000510932 243 ntBASIC4.4□□□□□ -1.71
CCDC9Q9Y3X0 RNU2-53P-201ENST00000516257 147 ntBASIC4.4□□□□□ -1.71
CCDC9Q9Y3X0 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC9Q9Y3X0 AC105245.1-201ENST00000581934 244 ntBASIC4.4□□□□□ -1.71
CCDC9Q9Y3X0 AC096708.3-201ENST00000584226 559 ntTSL 2 BASIC4.4□□□□□ -1.71
CCDC9Q9Y3X0 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC4.4□□□□□ -1.71
CCDC9Q9Y3X0 ZNF616-202ENST00000596290 568 ntTSL 4 BASIC4.4□□□□□ -1.71
CCDC9Q9Y3X0 AC069294.1-201ENST00000608397 350 ntBASIC4.4□□□□□ -1.71
CCDC9Q9Y3X0 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC4.4□□□□□ -1.71
CCDC9Q9Y3X0 MAPK10-373ENST00000641983 6772 ntBASIC4.4□□□□□ -1.71
CCDC9Q9Y3X0 MTND4P27-201ENST00000450813 1354 ntBASIC4.4□□□□□ -1.71
CCDC9Q9Y3X0 KCNH7-204ENST00000618399 3713 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC9Q9Y3X0 ERBIN-201ENST00000284037 8647 ntTSL 1 (best) BASIC4.39□□□□□ -1.71
CCDC9Q9Y3X0 CEP85L-202ENST00000368488 7118 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC9Q9Y3X0 ADAM29-211ENST00000514159 3010 ntAPPRIS P1 TSL 4 BASIC4.39□□□□□ -1.71
CCDC9Q9Y3X0 Y_RNA.123-201ENST00000363338 102 ntBASIC4.39□□□□□ -1.71
CCDC9Q9Y3X0 RNU6-283P-201ENST00000364788 107 ntBASIC4.39□□□□□ -1.71
CCDC9Q9Y3X0 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
CCDC9Q9Y3X0 U6atac.2-201ENST00000408644 118 ntBASIC4.39□□□□□ -1.71
CCDC9Q9Y3X0 RNU2-41P-201ENST00000410991 178 ntBASIC4.39□□□□□ -1.71
CCDC9Q9Y3X0 EIF1AXP1-201ENST00000419267 435 ntBASIC4.39□□□□□ -1.71
CCDC9Q9Y3X0 EIF4EP4-201ENST00000424916 578 ntBASIC4.39□□□□□ -1.71
CCDC9Q9Y3X0 RPL23AP95-201ENST00000426806 265 ntBASIC4.39□□□□□ -1.71
CCDC9Q9Y3X0 LINC02336-201ENST00000434117 330 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC9Q9Y3X0 AC244670.1-201ENST00000436879 112 ntBASIC4.39□□□□□ -1.71
CCDC9Q9Y3X0 AC095032.1-201ENST00000444810 527 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC9Q9Y3X0 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC4.39□□□□□ -1.71
CCDC9Q9Y3X0 snoU13.14-201ENST00000459372 104 ntBASIC4.39□□□□□ -1.71
CCDC9Q9Y3X0 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC4.39□□□□□ -1.71
CCDC9Q9Y3X0 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC4.39□□□□□ -1.71
CCDC9Q9Y3X0 MIR3162-201ENST00000581818 82 ntBASIC4.39□□□□□ -1.71
CCDC9Q9Y3X0 MIR4435-1-201ENST00000582552 80 ntBASIC4.39□□□□□ -1.71
CCDC9Q9Y3X0 AC016727.1-205ENST00000605437 569 ntBASIC4.39□□□□□ -1.71
CCDC9Q9Y3X0 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC4.39□□□□□ -1.71
CCDC9Q9Y3X0 AL159153.1-201ENST00000619688 317 ntBASIC4.39□□□□□ -1.71
CCDC9Q9Y3X0 TAS2R13-201ENST00000390677 1637 ntAPPRIS P1 BASIC4.39□□□□□ -1.71
CCDC9Q9Y3X0 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC4.38□□□□□ -1.71
CCDC9Q9Y3X0 RNU6-1210P-201ENST00000363775 107 ntBASIC4.38□□□□□ -1.71
CCDC9Q9Y3X0 SET-203ENST00000372688 801 ntTSL 2 BASIC4.38□□□□□ -1.71
CCDC9Q9Y3X0 RNU6-142P-201ENST00000384019 107 ntBASIC4.38□□□□□ -1.71
CCDC9Q9Y3X0 Y_RNA.474-201ENST00000384341 102 ntBASIC4.38□□□□□ -1.71
CCDC9Q9Y3X0 RN7SKP61-201ENST00000410642 295 ntBASIC4.38□□□□□ -1.71
CCDC9Q9Y3X0 USP9YP30-201ENST00000430729 455 ntBASIC4.38□□□□□ -1.71
CCDC9Q9Y3X0 AC140059.1-201ENST00000489238 361 ntBASIC4.38□□□□□ -1.71
CCDC9Q9Y3X0 BTF3L4P4-201ENST00000506381 449 ntBASIC4.38□□□□□ -1.71
CCDC9Q9Y3X0 MIR3117-201ENST00000584034 78 ntBASIC4.38□□□□□ -1.71
CCDC9Q9Y3X0 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC4.38□□□□□ -1.71
CCDC9Q9Y3X0 AL670379.2-201ENST00000604983 252 ntBASIC4.38□□□□□ -1.71
CCDC9Q9Y3X0 AC018462.2-201ENST00000605375 395 ntBASIC4.38□□□□□ -1.71
CCDC9Q9Y3X0 MFSD8-233ENST00000641482 4860 ntBASIC4.38□□□□□ -1.71
CCDC9Q9Y3X0 AP000560.1-201ENST00000624150 1937 ntBASIC4.38□□□□□ -1.71
CCDC9Q9Y3X0 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC4.38□□□□□ -1.71
CCDC9Q9Y3X0 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC9Q9Y3X0 AC092268.1-201ENST00000342691 405 ntBASIC4.37□□□□□ -1.71
CCDC9Q9Y3X0 RNA5SP322-201ENST00000363617 119 ntBASIC4.37□□□□□ -1.71
CCDC9Q9Y3X0 RNU6-1180P-201ENST00000364935 107 ntBASIC4.37□□□□□ -1.71
CCDC9Q9Y3X0 RFX3-203ENST00000381984 364 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC9Q9Y3X0 Y_RNA.504-201ENST00000384481 104 ntBASIC4.37□□□□□ -1.71
CCDC9Q9Y3X0 AC078809.1-201ENST00000427601 140 ntBASIC4.37□□□□□ -1.71
CCDC9Q9Y3X0 KRTAP19-11P-201ENST00000439851 104 ntBASIC4.37□□□□□ -1.71
CCDC9Q9Y3X0 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC9Q9Y3X0 UBBP3-201ENST00000445497 241 ntBASIC4.37□□□□□ -1.71
CCDC9Q9Y3X0 SNORD5.1-201ENST00000458800 75 ntBASIC4.37□□□□□ -1.71
CCDC9Q9Y3X0 AC073901.1-201ENST00000462471 408 ntBASIC4.37□□□□□ -1.71
CCDC9Q9Y3X0 AC091826.1-201ENST00000514065 313 ntBASIC4.37□□□□□ -1.71
CCDC9Q9Y3X0 Y_RNA.708-201ENST00000516950 96 ntBASIC4.37□□□□□ -1.71
CCDC9Q9Y3X0 AC109446.1-201ENST00000566172 220 ntBASIC4.37□□□□□ -1.71
CCDC9Q9Y3X0 AC019183.1-201ENST00000580524 505 ntTSL 3 BASIC4.37□□□□□ -1.71
CCDC9Q9Y3X0 FGF7P1-201ENST00000582820 288 ntBASIC4.37□□□□□ -1.71
CCDC9Q9Y3X0 AL359198.2-201ENST00000611836 194 ntBASIC4.37□□□□□ -1.71
CCDC9Q9Y3X0 PISRT1.1-201ENST00000616930 107 ntBASIC4.37□□□□□ -1.71
CCDC9Q9Y3X0 PIK3C2G-201ENST00000266497 4764 ntAPPRIS P1 TSL 1 (best) BASIC4.37□□□□□ -1.71
CCDC9Q9Y3X0 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC4.36□□□□□ -1.71
CCDC9Q9Y3X0 MTND5P19-201ENST00000424872 1794 ntBASIC4.36□□□□□ -1.71
CCDC9Q9Y3X0 RNU6-1285P-201ENST00000363480 105 ntBASIC4.36□□□□□ -1.71
CCDC9Q9Y3X0 Y_RNA.387-201ENST00000383918 102 ntBASIC4.36□□□□□ -1.71
CCDC9Q9Y3X0 AC069540.2-201ENST00000441776 351 ntTSL 3 BASIC4.36□□□□□ -1.71
CCDC9Q9Y3X0 GPM6BP3-201ENST00000442797 145 ntBASIC4.36□□□□□ -1.71
CCDC9Q9Y3X0 AL121594.1-201ENST00000475906 575 ntBASIC4.36□□□□□ -1.71
CCDC9Q9Y3X0 AC104564.1-201ENST00000493028 407 ntBASIC4.36□□□□□ -1.71
Retrieved 100 of 98,524 protein–RNA pairs in 95.8 ms