Protein–RNA interactions for Protein: Q9UPM8

AP4E1, AP-4 complex subunit epsilon-1, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1Q9UPM8 RNU1-103P-201ENST00000516502 125 ntBASIC4.1□□□□□ -1.75
AP4E1Q9UPM8 RGS5-206ENST00000527988 373 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
AP4E1Q9UPM8 AC020895.1-201ENST00000595362 272 ntBASIC4.1□□□□□ -1.75
AP4E1Q9UPM8 AL356157.2-201ENST00000605122 111 ntBASIC4.1□□□□□ -1.75
AP4E1Q9UPM8 AL357075.2-201ENST00000614906 189 ntBASIC4.1□□□□□ -1.75
AP4E1Q9UPM8 AC004825.2-201ENST00000616634 455 ntBASIC4.1□□□□□ -1.75
AP4E1Q9UPM8 LINC00283-201ENST00000430111 1947 ntTSL 5 BASIC4.1□□□□□ -1.75
AP4E1Q9UPM8 CCSER1-201ENST00000432775 3927 ntTSL 1 (best) BASIC4.1□□□□□ -1.75
AP4E1Q9UPM8 NKTR-219ENST00000617821 7319 ntTSL 5 BASIC4.1□□□□□ -1.75
AP4E1Q9UPM8 KIFAP3-202ENST00000367765 4111 ntTSL 2 BASIC4.1□□□□□ -1.75
AP4E1Q9UPM8 OR56A3-203ENST00000641160 4438 ntAPPRIS P1 BASIC4.09□□□□□ -1.75
AP4E1Q9UPM8 SPRR2C-201ENST00000290702 219 ntBASIC4.09□□□□□ -1.75
AP4E1Q9UPM8 RNU6-142P-201ENST00000384019 107 ntBASIC4.09□□□□□ -1.75
AP4E1Q9UPM8 RNU6-213P-201ENST00000384051 104 ntBASIC4.09□□□□□ -1.75
AP4E1Q9UPM8 Y_RNA.597-201ENST00000410463 100 ntBASIC4.09□□□□□ -1.75
AP4E1Q9UPM8 RNU6-1245P-201ENST00000411130 106 ntBASIC4.09□□□□□ -1.75
AP4E1Q9UPM8 RPL26P27-201ENST00000414397 437 ntBASIC4.09□□□□□ -1.75
AP4E1Q9UPM8 BMS1P22-201ENST00000414726 313 ntBASIC4.09□□□□□ -1.75
AP4E1Q9UPM8 LINC00375-201ENST00000433074 601 ntTSL 5 BASIC4.09□□□□□ -1.75
AP4E1Q9UPM8 RPS26P15-201ENST00000488067 348 ntBASIC4.09□□□□□ -1.75
AP4E1Q9UPM8 AC020593.1-201ENST00000507399 299 ntBASIC4.09□□□□□ -1.75
AP4E1Q9UPM8 AC093534.2-201ENST00000511418 420 ntTSL 3 BASIC4.09□□□□□ -1.75
AP4E1Q9UPM8 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC4.09□□□□□ -1.75
AP4E1Q9UPM8 YPEL5P3-201ENST00000547227 352 ntBASIC4.09□□□□□ -1.75
AP4E1Q9UPM8 AC113146.1-202ENST00000560259 433 ntTSL 5 BASIC4.09□□□□□ -1.75
AP4E1Q9UPM8 FTX_3.1-201ENST00000610451 147 ntBASIC4.09□□□□□ -1.75
AP4E1Q9UPM8 AC135050.6-201ENST00000610813 528 ntTSL 3 BASIC4.09□□□□□ -1.75
AP4E1Q9UPM8 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC4.09□□□□□ -1.75
AP4E1Q9UPM8 HELLS-201ENST00000239026 2740 ntTSL 5 BASIC4.09□□□□□ -1.75
AP4E1Q9UPM8 IPO8P1-201ENST00000455509 3109 ntBASIC4.09□□□□□ -1.75
AP4E1Q9UPM8 USH2A-202ENST00000366942 6320 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
AP4E1Q9UPM8 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC4.09□□□□□ -1.76
AP4E1Q9UPM8 PTAR1-202ENST00000377200 9876 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
AP4E1Q9UPM8 PPP1R9A-208ENST00000456331 10090 ntTSL 1 (best) BASIC4.09□□□□□ -1.76
AP4E1Q9UPM8 PTPN22-202ENST00000420377 2726 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 PUS7L-207ENST00000551923 3313 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 ERBB4-203ENST00000402597 11699 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 NR3C1-202ENST00000343796 7286 ntAPPRIS P3 TSL 5 BASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 CNOT4-202ENST00000356162 2594 ntTSL 5 BASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 SNORD50B-201ENST00000364995 70 ntBASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 RNU1-100P-201ENST00000365255 165 ntBASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 UBE3AP2-201ENST00000429033 2259 ntBASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 IGKV1OR9-2-201ENST00000431378 277 ntBASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 AL162151.2-201ENST00000448875 158 ntBASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 RN7SL385P-201ENST00000468873 276 ntBASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 FMNL2-202ENST00000475377 3648 ntTSL 5 BASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 AC078817.1-201ENST00000492623 435 ntBASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 AC146944.2-203ENST00000502493 354 ntBASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 AC097462.2-201ENST00000504623 481 ntBASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 AC026726.1-201ENST00000512859 601 ntBASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 AC139495.1-202ENST00000513164 354 ntBASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 AP005660.1-201ENST00000522972 293 ntBASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 AP002004.1-207ENST00000531371 526 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 PARP1P2-201ENST00000556806 195 ntBASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 AC005255.1-201ENST00000593748 216 ntBASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 AC005176.2-201ENST00000596933 147 ntBASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 AL109809.4-201ENST00000603520 2185 ntBASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 MIR6134-201ENST00000617606 109 ntBASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 AC006001.4-201ENST00000622243 395 ntBASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 ZNF266-203ENST00000588933 3293 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
AP4E1Q9UPM8 RNF38-201ENST00000259605 5012 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
AP4E1Q9UPM8 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.07□□□□□ -1.76
AP4E1Q9UPM8 SRP72P2-201ENST00000344851 1979 ntBASIC4.07□□□□□ -1.76
AP4E1Q9UPM8 AC018555.1-201ENST00000567548 1980 ntBASIC4.07□□□□□ -1.76
AP4E1Q9UPM8 MIR372-201ENST00000362225 67 ntBASIC4.07□□□□□ -1.76
AP4E1Q9UPM8 SNORD56.1-201ENST00000362913 68 ntBASIC4.07□□□□□ -1.76
AP4E1Q9UPM8 SNORA36A-201ENST00000384221 132 ntBASIC4.07□□□□□ -1.76
AP4E1Q9UPM8 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC4.07□□□□□ -1.76
AP4E1Q9UPM8 AL512844.2-201ENST00000433990 593 ntBASIC4.07□□□□□ -1.76
AP4E1Q9UPM8 SETP5-201ENST00000437270 562 ntBASIC4.07□□□□□ -1.76
AP4E1Q9UPM8 PPIAP15-201ENST00000479662 484 ntBASIC4.07□□□□□ -1.76
AP4E1Q9UPM8 RNU6-966P-201ENST00000516479 104 ntBASIC4.07□□□□□ -1.76
AP4E1Q9UPM8 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC4.07□□□□□ -1.76
AP4E1Q9UPM8 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC4.07□□□□□ -1.76
AP4E1Q9UPM8 AC055872.1-201ENST00000570978 278 ntBASIC4.07□□□□□ -1.76
AP4E1Q9UPM8 AF001550.1-201ENST00000572747 573 ntTSL 4 BASIC4.07□□□□□ -1.76
AP4E1Q9UPM8 AC019159.1-201ENST00000605094 187 ntBASIC4.07□□□□□ -1.76
AP4E1Q9UPM8 AC022441.3-201ENST00000605737 136 ntBASIC4.07□□□□□ -1.76
AP4E1Q9UPM8 MIR4727-201ENST00000622232 55 ntBASIC4.07□□□□□ -1.76
AP4E1Q9UPM8 MIR6500-201ENST00000622700 86 ntBASIC4.07□□□□□ -1.76
AP4E1Q9UPM8 LINC01002-202ENST00000631412 459 ntTSL 5 BASIC4.07□□□□□ -1.76
AP4E1Q9UPM8 SLC16A7-201ENST00000261187 11777 ntAPPRIS P1 TSL 1 (best) BASIC4.07□□□□□ -1.76
AP4E1Q9UPM8 OR1C1-202ENST00000641256 3719 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
AP4E1Q9UPM8 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC4.07□□□□□ -1.76
AP4E1Q9UPM8 AC106871.1-201ENST00000568324 3102 ntBASIC4.06□□□□□ -1.76
AP4E1Q9UPM8 RAD17-208ENST00000380774 2117 ntAPPRIS P1 TSL 1 (best) BASIC4.06□□□□□ -1.76
AP4E1Q9UPM8 DOCK7-218ENST00000635123 6297 ntAPPRIS ALT2 TSL 5 BASIC4.06□□□□□ -1.76
AP4E1Q9UPM8 ACEA_U3.1-201ENST00000363057 217 ntBASIC4.06□□□□□ -1.76
AP4E1Q9UPM8 RNU6-653P-201ENST00000363074 106 ntBASIC4.06□□□□□ -1.76
AP4E1Q9UPM8 RNU1-73P-201ENST00000383971 164 ntBASIC4.06□□□□□ -1.76
AP4E1Q9UPM8 RNU6-1027P-201ENST00000383998 107 ntBASIC4.06□□□□□ -1.76
AP4E1Q9UPM8 MIR3074-201ENST00000384885 81 ntBASIC4.06□□□□□ -1.76
AP4E1Q9UPM8 RNA5SP239-201ENST00000410218 129 ntBASIC4.06□□□□□ -1.76
AP4E1Q9UPM8 RN7SKP61-201ENST00000410642 295 ntBASIC4.06□□□□□ -1.76
AP4E1Q9UPM8 RPL23AP36-201ENST00000413895 458 ntBASIC4.06□□□□□ -1.76
AP4E1Q9UPM8 AL117339.2-201ENST00000430475 180 ntBASIC4.06□□□□□ -1.76
AP4E1Q9UPM8 AP000873.1-201ENST00000463987 400 ntBASIC4.06□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 97.5 ms